DY262996

Overview
NameDY262996
Unique NameDY262996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262996 vs. ExPASy Swiss-Prot
Match: FLA4_ARATH (Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.111e-33
Identity = 83/137 (60.58%), Postives = 96/137 (70.07%), Query Frame = 3
Query:    3 KFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGS-VAIDTGLVQASVTQTVFDQNPLAIFGVSKVLLPREIFGKEPSVTTKPGNQQIGNARPPGVSPSPEKSPGLGGPSSHLTSPPGFREDMRSNA 410
            KFHVLHSYY LGSLESI NPVQPTLATE+MGAG +TLNISRVNGS V I++G+V A VTQT FDQNP+++FGVSKVLLP+E+F K          Q +  A P  +S SPE S       S L SPP  RE + S A
Sbjct:  275 KFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELFPK--------SGQPVATAPPQEISLSPESS---SEQPSRLVSPP--REIVSSGA 398          
BLAST of DY262996 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 50/143 (34.97%), Postives = 69/143 (48.25%), Query Frame = 3
Query:    3 KFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVLLPREIFGKEPSVTTKPGNQQIGNARP-PGVSPSPEKSPGLGGP------SSHLTSPPGFREDMRSNA 410
            ++H L  Y P GSL++  N +  TLAT   GAG+F L  S     V + TG+  + +  TV D  P+ IF V  VLLP E+FGK  S +  P  + +    P P  +PSP  +     P      S+   SP G      +NA
Sbjct:  254 EYHALAEYKPKGSLKTNKNNIS-TLATN--GAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAPEPVTAPTPSPADAPSPTAASPPAPPTDESPESAPSDSPTGSANSKSANA 393          
BLAST of DY262996 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 3
Query:    3 KFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGRFTLNISRVNGSVAIDTGLVQASVTQTVFDQNPLAIFGVSKVLLPREIFGKEPSVTTKPGNQQIGNARP-PGVSPSPEKSPGLGGPSSHLTSPP 380
            ++H L  Y P GSL++  + +  TLAT   GAG++ L  S     V + TG+  + +  TV D+ P+ IF V  VLLP E+FGK  S +  P  + +    P P  SPSP ++     PS    SPP
Sbjct:  255 EYHALAEYKPKGSLKTNKDAIS-TLATN--GAGKYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGK--SSSPAPAPEPVSAPTPTPAKSPSPVEA-----PSPTAASPP 371          
The following BLAST results are available for this feature:
BLAST of DY262996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FLA4_ARATH1.111e-3360.58Fasciclin-like arabinogalactan protein 4 OS=Arabid... [more]
FLA8_ARATH2.409e-1234.97Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
FLA10_ARATH2.039e-1137.01Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CB07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262996 ID=DY262996; Name=DY262996; organism=Citrus clementina; type=EST; length=784bp
TGAAATTCCATGTTTTGCATTCTTATTATCCGCTCGGTTCGCTCGAGTCG
ATAGTGAACCCGGTTCAGCCGACATTGGCGACCGAAGACATGGGAGCCGG
TCGGTTTACGTTAAACATTTCGAGAGTTAATGGTTCAGTGGCTATCGATA
CTGGGCTCGTTCAAGCATCGGTAACGCAAACAGTTTTTGATCAGAATCCG
TTGGCGATTTTTGGGGTATCAAAAGTGTTACTGCCAAGGGAGATTTTTGG
GAAGGAGCCGTCGGTGACGACGAAGCCGGGGAATCAGCAGATAGGCAATG
CTCGGCCGCCGGGTGTATCACCGTCGCCTGAGAAATCACCGGGACTCGGT
GGGCCCTCTTCGCATTTGACGTCGCCACCCGGCTTTCGCGAAGATATGAG
ATCAAACGCTGATGGATTGCAGTTGCAGTGAAGGACCTACGTTGTTGCAG
CTGCTCTGTGTTGAAAAGGATGGTTGTAGGTACTGGTAAGAATCTTTTTT
TTTTTTTTCGGGGACAATTTTTTTTTCGGTTCTTTATTTTGGTAAATTTG
CGAAATTTAATTGGGCTAAAAAAGACCCCCAAATTGTTTAATTTTTTGGG
TTTTTTTATAAAAGGGGGAGTTTTTTTTTAATTGGGGGTCCGGAAAATAA
AAAAATTAAAATTTACAAAAAACCCCTTTTTGTGCCCCCGGCTACTATTT
TTGTTTTTTTTTTTTTTTTTTTTTTTTTGGTGGGTTTGTGGGATTTTTTG
ATTAAAAGGAGAGAACATTTTTTTTTAGAATAAT
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