DY263008

Overview
NameDY263008
Unique NameDY263008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1329
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263008_ssr102 microsatellite DY263008_ssr102:102..113. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2384 contig Ccv1_Contig2384:1..1329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263008 vs. ExPASy Swiss-Prot
Match: XPO4_MOUSE (Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.133e-13
Identity = 71/266 (26.69%), Postives = 123/266 (46.24%), Query Frame = 1
Query:  211 AEATILGLCQSPQPYKACQFILENSQVXXXXXXXXXXXXXXXXXEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKAC-TAALRLLHQILNWDFQFDTSGRKISIIVFSAGVRTENSSSKKSECIIFQPGPAWCDALISSGHMVGF*TYFR 1002
            AE   L   +S  P+  C+ ILE S+V                 EW  L     +SL  F L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q ++       Q +  + L +L+SEFS S+ +S +GL  EFH  C+   + + L+  +       + V ++    +  ++++ +     L L +Q+L+W+F     GR   I +F           + S+ ++ +P  +W +AL+ S  M  F T  R
Sbjct:   37 AEHIFLSFRKSKSPFAVCRHILETSKVDYVLFQAATAIMEAVVREWVLLEKGSIESLRTFLLTYVLQRPNLQK-YVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQ-LISSGNPTVQTLACSILTALLSEFSSSSKTSNIGLSMEFHGNCKRVFQEEDLRQIFM----LTVGVLQEFSRRENLSAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMF-----------ESSQNVLLKPTESWREALLDSRVMELFFTVHR 283          
BLAST of DY263008 vs. ExPASy Swiss-Prot
Match: XPO4_CHICK (Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.638e-13
Identity = 72/270 (26.67%), Postives = 122/270 (45.19%), Query Frame = 1
Query:  211 AEATILGLCQSPQPYKACQFILENSQVXXXXXXXXXXXXXXXXXEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA-----LRLLHQILNWDFQFDTSGRKISIIVFSAGVRTENSSSKKSECIIFQPGPAWCDALISSGHMVGF*TYFR 1002
            AE   L   +S  P+  C+ ILE S+V                 EW  L     +SL  F L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q ++       Q +  + L +L+SEFS S+ +S +GL  EFH  C+   + D L+  +         +T ++++       + A  ++     L L +Q+L+W+F     GR   I +F           + S+ ++ +P  +W + L+ S  M  F T  R
Sbjct:   40 AEHIFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKTSIESLRTFLLTYVLQRPNLQK-YVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQ-LISSGNPTVQTLACSILTALLSEFSSSSKTSNIGLSMEFHGNCKRIFQEDDLRQIF--------MLTVEVLQEFRRRENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMF-----------ESSQNVMLKPTESWRETLLDSRVMELFFTVHR 286          
BLAST of DY263008 vs. ExPASy Swiss-Prot
Match: XPO4_HUMAN (Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.751e-13
Identity = 71/270 (26.30%), Postives = 123/270 (45.56%), Query Frame = 1
Query:  211 AEATILGLCQSPQPYKACQFILENSQVXXXXXXXXXXXXXXXXXEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA-----LRLLHQILNWDFQFDTSGRKISIIVFSAGVRTENSSSKKSECIIFQPGPAWCDALISSGHMVGF*TYFR 1002
            AE   L   +S  P+  C+ ILE S+V                 EW  L     +SL  F L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q ++       Q +  + L +L+SEFS S+ +S +GL  EFH  C+   + + L+  +         +T ++++  +    + A  ++     L L +Q+L+W+F     GR   I +F           + S+ ++ +P  +W + L+ S  M  F T  R
Sbjct:   37 AEHIFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKGSIESLRTFLLTYVLQRPNLQK-YVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQ-LISSGNPTVQTLACSILTALLSEFSSSSKTSNIGLSMEFHGNCKRVFQEEDLRQIF--------MLTVEVLQEFSRRENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMF-----------ESSQNVLLKPTESWRETLLDSRVMELFFTVHR 283          
BLAST of DY263008 vs. ExPASy Swiss-Prot
Match: XPO4_XENLA (Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.805e-12
Identity = 70/270 (25.93%), Postives = 123/270 (45.56%), Query Frame = 1
Query:  211 AEATILGLCQSPQPYKACQFILENSQVXXXXXXXXXXXXXXXXXEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA-----LRLLHQILNWDFQFDTSGRKISIIVFSAGVRTENSSSKKSECIIFQPGPAWCDALISSGHMVGF*TYFR 1002
            AE   L   +S  P+  C+ ILE S+V                 EW  L     +SL  F L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q +   +    Q +  + L +L+ EFS S+ +S +GL  EFH  C+   + + L+  +         +T ++++  +    + A  ++     L L +Q+L+W+F     GR   I +F           + S+ ++ +P  +W + L++S  M  F T  R
Sbjct:   36 AEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKSSIESLRTFLLTYVLQRPNLQK-YVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQLISSCNPT-MQTLACSILTALLIEFSSSSKTSNIGLSMEFHGSCKRVFQDEDLRRIF--------MLTIEVLQEFSRRENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMF-----------ESSQNVMLKPTESWRETLLNSRVMELFFTVHR 282          
BLAST of DY263008 vs. ExPASy Swiss-Prot
Match: XPO4_DANRE (Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.022e-12
Identity = 72/270 (26.67%), Postives = 122/270 (45.19%), Query Frame = 1
Query:  211 AEATILGLCQSPQPYKACQFILENSQVXXXXXXXXXXXXXXXXXEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA-----LRLLHQILNWDFQFDTSGRKISIIVFSAGVRTENSSSKKSECIIFQPGPAWCDALISSGHMVGF*TYFR 1002
            AE   L   +S  P+  C+ ILE S+V                 EW  L  +  +SL  F L +V+Q  +  + YV+ +I    A ++KRG LD  S + ++ F +V Q ++       Q +  + L +L+SEFS S  +S +GL  EFH  C+   + D L+  +         +T ++++  +    + A  +      L L +Q+L+W+F     GR   I +F A   T N        ++ +P  +W ++L+    M  F T  R
Sbjct:   36 AEHIFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKNSIESLRTFLLTYVLQRPNLQK-YVREQILLAVAVIVKRGSLD-KSINCKSIFLEVSQ-LISSGNPTVQTLACSILTALLSEFSSSNKTSNIGLSMEFHGSCKRIFQEDDLRQIF--------MLTMEVLQEFSRRENLNAQMSCVFQRYLALANQVLSWNFLPPNLGRHY-IAMFEA---TPN--------VMLKPTESWRESLLDHRVMDLFFTVHR 282          
The following BLAST results are available for this feature:
BLAST of DY263008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
XPO4_MOUSE2.133e-1326.69Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=1[more]
XPO4_CHICK3.638e-1326.67Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1[more]
XPO4_HUMAN4.751e-1326.30Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2[more]
XPO4_XENLA1.805e-1225.93Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1[more]
XPO4_DANRE4.022e-1226.67Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CC07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263008 ID=DY263008; Name=DY263008; organism=Citrus clementina; type=EST; length=1329bp
ATTTAATCACACCAGTCATTTTTTCATCTCTGGCTACGTAGAATCAACTG
ACTGAAAGTAATGATAAAGATGCAAGAATATTCAAACGGAGAAGGAGGAG
ATGGTGGTGGTGGCGGCGGCGGGCCCGCCGACTTGGCCAAGCTTCAGTCT
ATTATGCACTCCATCGAGATCGCTTGCTCTTCTATTCAAATGCATGTTAA
TCCAGCGGCAGCGGAGGCAACTATTTTGGGGCTATGTCAGTCCCCTCAGC
CGTACAAGGCATGCCAGTTTATCCTTGAGAATTCACAGGTAGCAAATGCA
AGGTTTCAGGCTGCTGCAGCAATTCGAGATGCAGCTATGCGAGAGTGGTC
TTTCCTGACAGCCGATGAAAAGAAAAGCTTGATTGGTTTTTGTCTGTGCT
TTGTTATGCAACATGCTAGTTCACCTGAAGGCTATGTCCAAGCCAAGATA
TCTTCCGTGGCAGCGCAGTTGATGAAAAGGGGATGGCTTGATTTTACTTC
ATCTGATAAGGAAGCATTCTTCAGTCAGGTACACCAGGCTGTCCTTGGGA
TTCATGGAGTAGACACGCAGTTCATTGGAATCAATTTCCTTGAGTCATTG
GTATCTGAATTTTCTCCTTCTACTTCAAGTGCAATGGGCCTTCCTAGGGA
GTTCCATGAACAGTGCCGTATATCTTTAGAGCTAGATTATCTGAAGACAT
TTTATTGTTGGGCAAGAGATGCTGCTTTAAGTGTTACAAAACAAATAATT
GAATCTGATGCCGCTGCATCTGAGGTTAAAGCTTGTACTGCTGCCCTGCG
TCTGTTGCATCAAATCCTGAACTGGGATTTTCAGTTTGACACCAGTGGCA
GAAAAATTAGTATAATTGTTTTTTCAGCTGGGGTTAGAACTGAGAACTCT
TCATCTAAGAAGTCTGAGTGTATCATATTTCAGCCTGGTCCTGCATGGTG
CGATGCTTTAATTTCAAGTGGTCATATGGTTGGCTTCTGAACTTATTTTC
GGCCCTGAAACAGGAATTTTCCAGTGAAGGGTACTGGCTGGATTGCCCCT
TTGGCGTTCTCGCCTAAAACCTATTTTGGCATCTTTCCCCTTGGCGGAAA
TGTTTTTCCTTCTGGTTTGTTTTTTTTTATTTAACCAACTTATCTAAAAG
GGTGTTTTTTGGGTCCATTTTTTCGGTTTTCCCGTTGCCCTTTTCTTTTA
CACCTTTTTCGGGCCCACCCAAAAAAAAAAAGGGTTGTGCCCCCCCACCC
CACTAGTGTGGGCCTTTTTTCTTTTTCCCACTTTTTTTATTTGTTTTATT
TTCTAGTGTTTAATAATAAATTTTTTTTA
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