DY263009

Overview
NameDY263009
Unique NameDY263009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1342
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263009_ssr20 microsatellite DY263009_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:185..1527. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 4.538e-88
Identity = 172/344 (50.00%), Postives = 226/344 (65.70%), Query Frame = 3
Query:   60 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVND---QXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLRNEF 1082
            LLG S   L+  AV+ GQ +YRG+QLH  +Y + ++ ++     P+++R  LQE  + VGR  + + + + DGTVK L++L D  LIETVGIP        RLT CVSSQVGCP+ C+FCATGK G+ RNL  HEI+ QVL ++E F  RV++VVFMGMGEP+LN  +V++A R LN+D+ IGQR IT+STVGVP  I  LA   LQ TLA+SLHAPNQ+LR+ ++PSA  YPL+A+++DCRDY   + RR+SFEY LLAGVND                  G   HVNLIP+N I  +DYQRP+   V  F   LE H + ++  +  G D+ AACG LR  F
Sbjct:    8 LLGQSLAALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQLADGELIETVGIPTA-----RRLTVCVSSQVGCPMACNFCATGKMGYRRNLKLHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLDALIQDCRDYMLCSGRRISFEYTLLAGVNDLPIHARQLAHLLRQASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAACGQLRGSF 344          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Ribosomal RNA large subunit methyltransferase N OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 1.011e-87
Identity = 174/338 (51.48%), Postives = 223/338 (65.98%), Query Frame = 3
Query:   60 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLR 1073
            LLG S+ +L   A    Q +YRG+Q+H  IY++ V  + +   LP+ +R ++ +    VGR  I     A DGTVK L+KL D ++IETVGIP +      RLT CVSSQVGCP+ C FCATGKG + RNL+ HEIV QVL ++E F+ RV NVVFMGMGEP+LNL+ VL A R LN+DV IGQR +T+STVG+P  I KLA ++LQ TLA+SLHA NQ++R  +VPSAK YPLE ++KDCR Y  +T RRV+FEY +L+GVNDQ              G   HVNLIP+N I   DYQRP +K +  F  +L+S  I  +  +  G D  AACG LR
Sbjct:   13 LLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIADI--PVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQVLTVQEDFQQRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGRRVTFEYIVLSGVNDQTEHALELAHHLR--GFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITASIRRSRGLDKDAACGQLR 341          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_GLOVI (Ribosomal RNA large subunit methyltransferase N OS=Gloeobacter violaceus GN=rlmN PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 2.941e-87
Identity = 169/338 (50.00%), Postives = 222/338 (65.68%), Query Frame = 3
Query:   60 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLR 1073
            LLG S +EL+      GQ +YR +QLH  +Y+R V+ +      P+++R  +      VGR  + R   AADGT+K L+   D   +ETVGIP  +     RLT CVSSQVGCP+ C FCATG+ GF+RNL  HEIV QVL ++E F  RV++VVFMGMGEP+LNL +V++A R LN D+ IGQR IT+STVGVP  I++L +YKLQ TLA+SLHAPNQ LR  ++P+A+ YP+E +++DCRDY + T+RRVSFEY LLAG+ND+              G   HVNLIP+N I+G +Y+RP +  V AF   L  HKI  +     G +  AACG LR
Sbjct:    5 LLGQSAEELRIWVESQGQPAYRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHSV--PVGRSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-----RLTVCVSSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLLNLGAVVQALRVLNGDIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLKLIPTAQHYPIEELLEDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAILR--GFQSHVNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQLR 333          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. GN=rlmN PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 3.842e-87
Identity = 174/347 (50.14%), Postives = 221/347 (63.69%), Query Frame = 3
Query:   60 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGH---HVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLRNEFRKN 1091
            LLG S   L+  AV  GQ +YRG+QLH  IY++ ++ +E     P+++R  +Q   + VGR  I +   A DGTVK L+ L D +LIETVGIP        RLT CVSSQVGCP+ C FCATGK G+ RNL  HEI+ QVL ++E F  RV++VVFMGMGEP+LN  +V++A R LN+D+ IGQR IT+STVGVP  I  LA   LQ TLA+SLHAPNQ LR+ ++PSA  YPL+ +++DCRDY   T RRVSFEY LL+GVND                R     HVNLIP+N I  +DYQRP+   V  F   LE H++     +  G D  AACG LR  F ++
Sbjct:    8 LLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAVQS--YPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLDTLIQDCRDYMLRTGRRVSFEYTLLSGVNDLPIHARQLAQLLQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNAACGQLRGSFLRS 347          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 8.558e-87
Identity = 170/350 (48.57%), Postives = 227/350 (64.86%), Query Frame = 3
Query:   54 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLRNEFR 1085
            + LLG S+ EL++ AV  GQ ++RG+QLH  +Y + V++++    LP+++R  LQ  G +VGRL       +AD T KLL+  ED   +ETVGIP +      RLT CVSSQVGCP+ C FCATGKGG  R+L+ HEIV QVL+I E+ + R ++VVFMGMGEP+LN+++VLE+ RCLN D+ IGQR IT+STVGVP+T+ +LA   L      Q TLA+SLHAPNQ LRE ++P+AK+YP +A++ DCR Y  +T RRVSFEY LL GVND               G   HVNLI +N I+  ++QRP  + +  F   LE   + ++     G D  AACG LR   R
Sbjct:    3 SALLGRSKSELEEWAVAQGQPAFRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLGTEDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAGHEIVAQVLSIREVMERRPSHVVFMGMGEPLLNIEAVLESIRCLNDDLGIGQRRITVSTVGVPHTLPRLADLALKQLGRAQFTLAVSLHAPNQALREELIPTAKTYPYDALLDDCRYYLNKTGRRVSFEYILLGGVNDHPHHASELADRVG--GFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLERRGVAVSLRASRGLDQDAACGQLRRNRR 345          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 9.462e-86
Identity = 169/339 (49.85%), Postives = 221/339 (65.19%), Query Frame = 3
Query:   57 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLR 1073
            VLLG S  EL+      GQ  YRG+QLH  +Y++  + ++     P+ +R  L +    +GR  I     A DGTVKLL+ L D   IETVGIP  D     RLT CVSSQVGCP+ C FCATGKGG+ RNL+ HEI+ QVL I+     RV++VVFMGMGEP+LNL +VL+A  CLN+D+ IGQR ITISTVG+P  I++LA ++LQ+TLA+SLHAPNQ LRE ++PSAK YPL  ++ DCR Y Q+T RR++FEY +LAGVND+              G   HVNLIP+N I  + YQRP  + +  F + L++  +  +  +  G D +AACG LR
Sbjct:    2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQVGCPMACDFCATGKGGYRRNLACHEILDQVLTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPLSQLIADCRAYVQQTGRRITFEYTVLAGVNDRPQHAEELAQLLR--GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLR 331          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_CYAA5 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 2.108e-85
Identity = 170/338 (50.30%), Postives = 222/338 (65.68%), Query Frame = 3
Query:   60 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLR 1073
            LLG S  +L       GQ +YRGKQLH  +Y++ V+ +      P+++R +L++  + +GR  I     A D T K L+ L D  +IETVGIP        RLT CVSSQVGCP+ C FCATGKGG++RNL+  EIV QVL ++E F+ RV++VVFMGMGEP+LNLK V++A + LN+DV IGQR +TISTVGVP  I +LA ++LQ T A+SLHA NQ LRE ++PSAKSYPL  ++ DCR Y + T RRV+FEY LL GVND               G   HVNLIP+N I+ +DYQRP  +++  F + LE HKI ++     G +A AACG LR
Sbjct:    8 LLGKSVGQLTDWVKQQGQPAYRGKQLHQWLYQKGVRSLTEISVFPKAWREELKD--YPIGRSNIVHCTIAPDQTRKYLLSLGDGLIIETVGIPTSK-----RLTVCVSSQVGCPMNCDFCATGKGGYTRNLTCAEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGVPKKILELAHHQLQVTFAVSLHAANQTLREQLIPSAKSYPLPKLLADCRKYVEITGRRVTFEYILLGGVND--LPEQGIQLAKCLTGFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACGQLR 336          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP2 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rlmN PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 6.133e-85
Identity = 169/346 (48.84%), Postives = 226/346 (65.32%), Query Frame = 3
Query:   54 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLRNEFRKN 1091
            +VLLG S  EL       GQ +YRGKQL++ +Y++ + ++      P+++R   Q   + VGR  I    TA DGT K L++L D  +IETVGIP E      RLT CVSSQVGC + C FCATGK GF+R+L +HEI+ QVL ++  F+ RV++VVFMGMGEP+ NL+ VL++ + LN+D+ IGQR +T+STVGVP+ I+ LA   LQ TLA+SLHAPNQ LRESI+P+A  YP+EA++ +CR+Y   T RR+SFEY LLAGVND               G   HVNLIP+N I    +QRP KK +  F   L+ HKI ++     G +A AACG LR+  R++
Sbjct:    4 DVLLGKSLPELTDWIETTGQPAYRGKQLYNWLYQKGIHDLSEITVFPKAWRE--QMGTYPVGRSQIHHQRTAPDGTRKYLLQLHDGLIIETVGIPTEK-----RLTVCVSSQVGCAMACDFCATGKSGFTRHLQAHEIIDQVLTVQTDFQQRVSHVVFMGMGEPLANLEQVLKSIQSLNQDIGIGQRSLTVSTVGVPDQIRALAQQNLQITLAVSLHAPNQALRESIIPTAVHYPIEALLDECREYVAITRRRLSFEYILLAGVNDLPDHAAELAKKLK--GFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAVSVRYSKGLEADAACGQLRSNLRRS 340          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_SYNE7 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus elongatus (strain PCC 7942) GN=rlmN PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 1.046e-84
Identity = 171/348 (49.14%), Postives = 222/348 (63.79%), Query Frame = 3
Query:   48 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLR 1073
            DA  LLG S  ELQ   V  GQ SYR KQL+  +Y+R +  +      P+++R  LQ     VGR  I     +  GT+K L++L D  +IE VGIP  D     RLT CVSSQ+GC + C FCATGKGGF R+L+ HEI+ QVL ++E ++ RV+N+VFMGMGEP+LNL +VL A RCLN+D+ IGQR IT+STVG+P  I++LA  K      LQ TLA+SLHAPNQ +R+ ++PS++ YP+  ++++CRDY Q T RRV+FEY LLAG+NDQ              G   HVNLIP+N I   +YQRP K  V AFA AL   ++ +      G  A AACG LR
Sbjct:   13 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGTIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQLGCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLLNLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQITGRRVTFEYILLAGLNDQPEQAEQLAQLLR--GFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAACGQLR 351          
BLAST of DY263009 vs. ExPASy Swiss-Prot
Match: RLMN_SYNY3 (Ribosomal RNA large subunit methyltransferase N OS=Synechocystis sp. (strain PCC 6803) GN=rlmN PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.784e-84
Identity = 174/347 (50.14%), Postives = 218/347 (62.82%), Query Frame = 3
Query:   60 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLEAIMKDCRDYFQETSRRVSFEYALLAGVNDQXXXXXXXXXXXXXWGRGHHVNLIPFNQIKGSDYQRPYKKAVLAFAAALESHKIPLAYVKRGGWDARAACGPLRNEFRKNPLA 1100
            LL +S  EL       GQ +YRGKQ+H  +Y++  + +     LP+ +R   +   + +GR  I     A D T K L++L D  +IETVGIP        RLT CVSSQVGC + C+FCATGKGGF RNL SHEIV QVL ++E F  RV+NVVFMGMGEP+LNL  V++A  CLN+ V IGQR +TISTVG+P  I++LA   LQ T A+SLHAPNQ LR+S++PSA+ YPLE ++ DCR Y + T RRV+FEY LLAGVNDQ              G   HVNLIP+N I   DYQRP +  +  FA  L  H+I ++     G  A AACG LR   RK  LA
Sbjct:    8 LLSLSLPELTDWVQTTGQPAYRGKQIHQWLYQKGARSLTAMTDLPKVWRE--KNVHYPIGRSVIDHCAVAPDHTRKYLLRLADGLIIETVGIP-----SSKRLTVCVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQVLTVQEEFHERVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIGQRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTGRRVTFEYVLLAGVNDQPVHAEELAQKLR--GFQTHVNLIPYNPISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQADAACGQLRAS-RKEELA 344          
The following BLAST results are available for this feature:
BLAST of DY263009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_SYNJA4.538e-8850.00Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ACAM11.011e-8751.48Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GLOVI2.941e-8750.00Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNJB3.842e-8750.14Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNS38.558e-8748.57Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEEB9.462e-8649.85Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CYAA52.108e-8550.30Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNP26.133e-8548.84Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNE71.046e-8449.14Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNY31.784e-8450.14Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CC08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263009 ID=DY263009; Name=DY263009; organism=Citrus clementina; type=EST; length=1342bp
CGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCGTGGAC
GCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTCGCCGT
CGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCTAATTT
ACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTCAGTCC
TTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTGCCGAT
TTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAATAAAGC
TGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAGACGAG
AAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTAGGTTGCCC
ATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAAGAAATC
TTTCAAGCCATGAAATTGTTGGGCAGGTGTTAGCAATTGAAGAGATCTTC
AAGCATAGGGTGACAAACGTAGTGTTCATGGGAATGGGCGAGCCAATGTT
GAACCTAAAGTCTGTGCTTGAAGCACATCGATGTTTGAATAAGGATGTGC
AAATTGGACAAAGGATGATTACAATTTCCACTGTGGGGGTTCCGAACACA
ATTAAAAAGTTGGCCTCTTACAAACTTCAGTCAACATTGGCTATCAGCTT
ACATGCTCCAAACCAGAAACTGAGGGAATCAATTGTGCCAAGTGCAAAGT
CCTATCCTCTTGAAGCAATCATGAAGGATTGCAGGGATTACTTCCAGGAA
ACGAGTCGGCGGGTGTCCTTTGAGTATGCTCTATTAGCTGGAGTCAATGA
TCAAGTAGAACATGCAGTAGAACTTGCAGAGCTACTTCATGAATGGGGAC
GTGGTCATCATGTGAACCTCATACCCTTCAATCAAATAAAAGGATCTGAT
TATCAACGCCCTTACAAAAAGGCGGTGCTAGCATTTGCAGCTGCTCTGGA
ATCCCATAAAATACCACTAGCATACGTCAAAAGAGGGGGATGGGATGCTA
GGGCAGCATGTGGTCCGCTAAGAAATGAATTTCGAAAAAATCCTTTGGCC
CTTTGACCTCAGTACTTCAAGTTTCGAAATCAAAAATTGGGGTGTACTTC
CTTGAAGGGGAAAAGGGGGGATTCTTTTCCACCACCAAACCTTTGTATTC
CTCCCTTCCCTACAAAACACAAAAAAACTTTTTCCCCCCCCCCTCCCCCC
AAAAAAAAGATCTGTGGGTGGGGAGAGAGCGGATTGGGGGGGGCGCAACC
CCCATAGTTTTTTTGTTGGAAGAGGGGGTGGGGGGGGGAACC
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