DY263017

Overview
NameDY263017
Unique NameDY263017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_ENCCU (DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 7.017e-49
Identity = 124/369 (33.60%), Postives = 183/369 (49.59%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK--PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K  +  +G+   L R N + TL  LRR    ++  GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G+E L + ++  L    K+FV+G W+G+  D +  +              +V I RD  + E+R+  DAGR  RPLLVV++         I+ L+     +  L+  G IE +  EEEE    A   K L  +  +     + +THCE+  + +LG+    IPF +H+ + R  YQS     QA+G   TN  +R+DTLS+ LFYPQ+PL  T   +            L   EL  GQNA+V      G  QED  +M +++  RG+F
Sbjct:  421 ATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAM-GKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSME-----------YLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLF 777          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_MOUSE (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 5.560e-46
Identity = 126/374 (33.69%), Postives = 186/374 (49.73%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFV-SXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    + +            ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IV      G  QED  +M R++  RG F
Sbjct:  449 ATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA----MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.560e-46
Identity = 126/374 (33.69%), Postives = 186/374 (49.73%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFV-SXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    + +            ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IV      G  QED  +M R++  RG F
Sbjct:  449 ATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA----MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 806          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_YEAST (DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 2.760e-45
Identity = 129/402 (32.09%), Postives = 189/402 (47.01%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------------------MGKIKSLEG-----KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME L D   +      +VFV+G W GV ++    +              +V + RD  + E++IF DAGR+ RPL +VE+                      + + +EG     + YT+ +LL+ G++E +  EEEE    A   + L           D++  K I+       FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIV      G  QED  +M ++S  RG+F
Sbjct:  462 ATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF 851          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_DICDI (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.029e-45
Identity = 124/369 (33.60%), Postives = 180/369 (48.78%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASY-SLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVV-ENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K     SG+   L R     TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S  +PI E L     E L + +   S+    K+FV+G W+G+       +S             +V + RD  + E+R++ D GR  RPL VV +N  +IK       +    Y +Q LL  GI+E +  EEEE    A   + L+    ++    +THCE+  S +LG+ C IIPF +H+ + R  YQ+     QA+G   TN  +R+DT++H LFYPQ+PL  T   + L        H     EL  GQN  V      G  QED  ++ +++  RG+F
Sbjct:  447 ATGNWGSS-KSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAM-GKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYL--------HF---RELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLF 802          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_CANGA (DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.029e-45
Identity = 129/403 (32.01%), Postives = 189/403 (46.90%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------------MGKIKSL-------------EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME L D   +      +VFV+G W GV ++    +              +V + RD  + E++IF DAGR+ RPL +VE+             G +  L             + ++YT+ +LL+ G++E +  EEEE    A   + L           ++++  K IK       FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN + R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIV      G  QED  +M ++S  RG+F
Sbjct:  460 ATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF 850          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_ASHGO (DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.029e-45
Identity = 131/405 (32.35%), Postives = 187/405 (46.17%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------------MGKIKSL--------------EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME L D   +      +VFV+G W G+ ++    V              +V I RD  + E++IF DAGR+ RPL VV +              G I+ L              E  NYT+ +LL+ GI+E +  EEEE    A   + L            +++  + IK       FTHCE+  S +LG++  +IPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIV      G  QED  +M ++S   G+F
Sbjct:  457 ATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDIREKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDINYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLF 849          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_PICGU (DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 1.370e-44
Identity = 134/417 (32.13%), Postives = 188/417 (45.08%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK-----------------------SLEGKNYTFQALLDHGIIELVGTEEEE---------------DCCTAWGIKYLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S     EPI   L   GME L D    +     +VFV+G W+G  ++    V              +V I RD  + E +IF DAGR+ RPL +V      E  G++K                         E   Y + +L++ G++E V  EEEE                  TA   K L  + ++  P K            FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T   +          H+  R EL  GQNAIV      G  QED  +M ++S  RG+F
Sbjct:  456 ATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAME----------HLKFR-ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF 860          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_CAEEL (DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 1.789e-44
Identity = 123/374 (32.89%), Postives = 182/374 (48.66%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD-SLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG-----------KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G+  GLVKNL +   +S  S+ EPI E L    ME L + +  ++    K+FV+G W+G+ ++      +            ++V + RD    E+RI+ DAGR+ RPLL+VEN             K  + E   YT+  L+  G++EL+ + EEE       I  + +D+         THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G NAIV      G  QED  +M  ++  RG+F
Sbjct:  455 ATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSM----IAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLF 812          
BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPB2_DROME (DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.051e-44
Identity = 122/371 (32.88%), Postives = 180/371 (48.52%), Query Frame = 2
Query:    2 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXX-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGMF 1081
            +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++             ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +            L   EL  G N+IV      G  QED  ++  ++  RG F
Sbjct:  450 ATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFF 808          
The following BLAST results are available for this feature:
BLAST of DY263017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RPB2_ENCCU7.017e-4933.60DNA-directed RNA polymerase II subunit RPB2 OS=Enc... [more]
RPB2_MOUSE5.560e-4633.69DNA-directed RNA polymerase II subunit RPB2 OS=Mus... [more]
RPB2_HUMAN5.560e-4633.69DNA-directed RNA polymerase II subunit RPB2 OS=Hom... [more]
RPB2_YEAST2.760e-4532.09DNA-directed RNA polymerase II subunit RPB2 OS=Sac... [more]
RPB2_DICDI8.029e-4533.60DNA-directed RNA polymerase II subunit rpb2 OS=Dic... [more]
RPB2_CANGA8.029e-4532.01DNA-directed RNA polymerase II subunit RPB2 OS=Can... [more]
RPB2_ASHGO8.029e-4532.35DNA-directed RNA polymerase II subunit RPB2 OS=Ash... [more]
RPB2_PICGU1.370e-4432.13DNA-directed RNA polymerase II subunit RPB2 OS=Pic... [more]
RPB2_CAEEL1.789e-4432.89DNA-directed RNA polymerase II subunit RPB2 OS=Cae... [more]
RPB2_DROME3.051e-4432.88DNA-directed RNA polymerase II subunit RPB2 OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CD04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263017 ID=DY263017; Name=DY263017; organism=Citrus clementina; type=EST; length=1332bp
CTCAACGGGAGCGTGGTCACATCCTTTCAAGAGGACAGAAAGAATTTCTG
GCATAGTGGCGAATCTTGGACGAGCAAATCCATTGCAGACACTTGTTGAT
TTGAGGAGAACAAGACAGCAGGTTCAGTATACAGGGAAGGTGGGAGATGC
TAGATACCCGCATCCTTCTCACTGGGGTAAGATTTGCTTTCTCTCTACCC
CAGATGGTGAAAATTGTGGGCTGGTGAAAAATTTAGGTGTCACTGGACTG
GTTAGTACAAGCATATTGGAGCCCATATTTGAGCAGTTGTTTAATAGCGG
AATGGAAAAGCTGGCAGATGATGCTTCCTATTCACTGGGAGGAAAGTTTA
AAGTGTTTGTTGATGGAGATTGGATTGGAGTTTGTAAGGATTCCCTCTCA
TTTGTTTCTGAGTTAAGAAGGAAGCGTCGCAGGAAGGAGTTACCCACTCA
GGTGGAAATCAAAAGAGATGAACTACAAAGTGAAGTACGGATATTTATGG
ATGCTGGGAGGATTTTACGCCCTCTTTTGGTGGTTGAAAATATGGGCAAG
ATTAAATCCCTGGAGGGGAAAAATTACACCTTTCAAGCCCTTTTGGACCA
TGGAATAATTGAGCTTGTTGGAACTGAAGAAGAGGAAGATTGCTGTACTG
CATGGGGTATTAAATACCTCTTAAAGGACATTGAAGATAAAAAACCCATA
AAGTTCACTCACTGTGAACTTGATATGTCCTTCTTGCTTGGTTTGAGTTG
TGGGATTATCCCATTTGCGAACCATGACCATGCAAGGAGGGTTCTGTATC
AATCACAGAAGCATTCTTCCCAGGCTATAGGTTTTCCAACAACCAATCCC
AGCATCAGAGTTGATACTCTATCACACCAGCTTTTCTACCCTCAAAGGCC
CCTTTTTCGGACAATGATTTCAGATTGTCTTGGAAAACCAGGTTATGGGC
CTAATCATATACTGCCCAGGCCAGAGCTCTACATTGGGCAAAATGCGATT
GTGGGCTGGAAAGGTCCCTTGGGGATACAACAAGAGGACCCCTGGGTGAT
GGAACGTGCCTCTCGGGGGCGGGGTATGTTTTCATTTGGACCCTTTAAAA
TTACAAGGGGGAAGGTCCAAAAAAAAAAATGCGGGGGAAGAGGCGGGCTT
CTGAAAAAATGGGTGAATTTTGGAAAGAAATCAAAAAAAAAATGGGGCCC
GGGTTAAACCCCCCAAAAAAAAGAGAGGGGTTTTCCCTTTCTTTTGGGGG
GCACCATCCCCCCGCTGGGGGGGGGGGACCTACCGGGGGGATGGGAAAAA
AAATAAGGCCGGAAATTTATCTTGGGGGGGGG
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