DY263113

Overview
NameDY263113
Unique NameDY263113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1339
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263113_ssr64 microsatellite DY263113_ssr64:64..75. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: KICH_SCHPO (Putative choline kinase OS=Schizosaccharomyces pombe GN=SPAC13G7.12c PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.080e-16
Identity = 61/195 (31.28%), Postives = 98/195 (50.26%), Query Frame = 1
Query:  448 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL----LWDRLRKWVSVAKSFC-----SAKDAKEFLLYTLKDEISMLEK---ELPNDHQE-----IGFLSNDLQYGNIMNEK 981
            L +  + GA+TN VY +A P   +  A  +L+RIYG  VE+F NR  E+   + ++    GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++ E H+  +  P + L     W     W+  AK+       S     EF + TL+++ +       E   D ++     + F  ND QYGN++  K
Sbjct:   63 LHIKRISGALTNAVYYVAPPEGYH--APKLLLRIYGPHVELFINRQVELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKAKAKILGRKHSLAITSEF-MKTLEEDFNAYYNWFVEWSRDKKDWFGLKMVFSHNDTQYGNLLKIK 254          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: CHKB_MOUSE (Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.080e-16
Identity = 53/183 (28.96%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  442 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSFCSAKDAKEFL--LYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNIM 972
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++   L+  + +++   +   S    +  L  +Y+LKDE++ L K L +    + F  ND+Q GNI+
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNSLRKLLDDTPSPVVFCHNDIQEGNIL 249          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: CHKB_RAT (Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.032e-15
Identity = 53/183 (28.96%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  442 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAKSFCSAKDAKEFL--LYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNIM 972
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++   L+  + +++   +   S    +  L  +Y+LKDE++ L   L      + F  ND+Q GNI+
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHLRTLLDATPSPVVFCHNDIQEGNIL 249          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: CHKB_HUMAN (Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.032e-15
Identity = 51/183 (27.87%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  442 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSF--CSAKDAKEFLLYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNIM 972
            + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++   L+  + +++   +        +     +Y+LKDE+  L K L +    + F  ND+Q GNI+
Sbjct:   67 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNIL 249          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: CHKA_RAT (Choline kinase alpha OS=Rattus norvegicus GN=Chka PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 8.179e-13
Identity = 61/218 (27.98%), Postives = 101/218 (46.33%), Query Frame = 1
Query:  442 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYG----------EGVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-GPRKALLWDRLRKWVSVAKSFCSAKDAK-----EFLLYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNI--MNEKKTAQLQKL 1005
            D   +  ++G ++N ++Q + P   A      R VL+R+YG          EG E   N ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++  P IS  +A KM  FH +KMP       L+  + K+++       +++A+     +FL Y L  E+  L   L      + F  ND Q GNI  +  ++ ++ QKL
Sbjct:  105 DQFHISVIRGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKMRSCNKEGSEQAQNENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELCLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLNQVLRLKFSREARVQQLHKFLSYNLPLELENLRSLLQYTRSPVVFCHNDCQEGNILLLEGQENSEKQKL 322          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: CHKA_MOUSE (Choline kinase alpha OS=Mus musculus GN=Chka PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 8.179e-13
Identity = 58/205 (28.29%), Postives = 94/205 (45.85%), Query Frame = 1
Query:  442 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYG----------EGVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-GPRKALLWDRLRKWVSVAKSFCSAKDAK-----EFLLYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNIM 972
            D   +  ++G ++N ++Q + P   A      R VL+R+YG          EG E   N ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++R P IS  +A KM  FH +KMP       L+  + K+++       +++A+     + L Y L  E+  L   L      + F  ND Q GNI+
Sbjct:  105 DQFHISVIRGGLSNMLFQCSLPDSIASVGDEPRKVLLRLYGAILKMRSCNKEGSEQAQNENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELRLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLNQVLRLKFSREARVQQLHKILSYNLPLELENLRSLLQYTRSPVVFCHNDCQEGNIL 309          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: KICH_YEAST (Choline kinase OS=Saccharomyces cerevisiae GN=CKI1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.822e-12
Identity = 58/214 (27.10%), Postives = 103/214 (48.13%), Query Frame = 1
Query:  391 KVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFI-HARTLSAADIRDPKISELVAAKMREFHD----LKMPGPRKALLWDRLRKWV----SVAKSFCSAKDAKEFLL----YTLKDEISMLEKELPNDHQEIG-------FLSNDLQYGNIM 972
            K +Q VA D          + ++ + GAMTN ++++ +P        ++L+RIYG  ++   +R+ E++    +S +  GP L G F +GR E+F+ +++TL+  DIR+ K S+ +A +M+E H     L       +  W ++ +W+     V +     K+ +  LL        D +    K L +  Q I        F  ND QYGN++
Sbjct:  139 KKIQPVAQD----------MNLVKISGAMTNAIFKVEYPK-----LPSLLLRIYGPNIDNIIDREYELQILARLSLKNIGPSLYGCFVNGRFEQFLENSKTLTKDDIRNWKNSQRIARRMKELHVGVPLLSSERKNGSACWQKINQWLRTIEKVDQWVGDPKNIENSLLCENWSKFMDIVDRYHKWLISQEQGIEQVNKNLIFCHNDAQYGNLL 337          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: EKIA_DICDI (Probable ethanolamine kinase A OS=Dictyostelium discoideum GN=etnkA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.924e-12
Identity = 47/184 (25.54%), Postives = 86/184 (46.74%), Query Frame = 1
Query:  448 LQVIPLKGAMTNEVYQIAWPAKNNGLARN-----VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAKEFL----LYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNIM 972
            L +  L G +TN +Y +    ++  + +      V++R+YG   E   +R +E+         G G +  G F +G +  FI    L+  DI  P +   +A ++ ++H ++MP  +   LW  ++KW ++A       +  E+     +  + +E  MLE+ L   +  I F  NDL  GNI+
Sbjct:   44 LTIQKLNGGITNVLYLV----EDKNIEQKYRYLPVVIRLYGYKSEEIIDRKNELIIQTEADQNGLGAKFYGLFDNGCIYGFIKGEPLAYEDISKPTMQTCIAKEIAQWHSIEMPTRKNPSLWPTIKKWAALAPDVYPVPEKNEYYQSINVKKMIEEGKMLEQRLAQLNSPIVFCHNDLLSGNII 223          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: EKI2_HUMAN (Ethanolamine kinase 2 OS=Homo sapiens GN=ETNK2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.015e-11
Identity = 41/148 (27.70%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  535 VLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGP-RKALLWDRLRKWVSVAKSFCS-AKDAKEFLLYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNIM 972
            VLVR+YGE  E+  +R++E+R F+ + +    P+L   F +G   E++    L    IR+P++  L+A +M + H +   G   K +LW ++  + ++ K+  + +  A    +  L+ E++ L++ L      + F  NDL   NI+
Sbjct:  109 VLVRVYGERTELLVDRENEVRNFQLLRAHSCAPKLYCTFQNGLCYEYMQGVALEPEHIREPRLFRLIALEMAKIHTIHANGSLPKPILWHKMHNYFTLVKNEINPSLSADVPKVEVLERELAWLKEHLSQLESPVVFCHNDLLCKNII 256          
BLAST of DY263113 vs. ExPASy Swiss-Prot
Match: CHKA_HUMAN (Choline kinase alpha OS=Homo sapiens GN=CHKA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.631e-11
Identity = 58/218 (26.61%), Postives = 98/218 (44.95%), Query Frame = 1
Query:  442 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------EGVEVFFNRDD---------EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMP-GPRKALLWDRLRKWVSVAKSFCSAKDAK-----EFLLYTLKDEISMLEKELPNDHQEIGFLSNDLQYGNI--MNEKKTAQLQKL 1005
            D   +  ++G ++N ++Q + P     L    R VL+R+YG          EG E     ++         E   F  ++ +  GP+L G F  GR+E+FI +R L   ++  P IS  +A KM  FH +KMP       L+  + K++         ++++     + L Y L  E+  L   L +    + F  ND Q GNI  +  ++ ++ QKL
Sbjct:  109 DEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKL 326          
The following BLAST results are available for this feature:
BLAST of DY263113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
KICH_SCHPO2.080e-1631.28Putative choline kinase OS=Schizosaccharomyces pom... [more]
CHKB_MOUSE2.080e-1628.96Choline/ethanolamine kinase OS=Mus musculus GN=Chk... [more]
CHKB_RAT1.032e-1528.96Choline/ethanolamine kinase OS=Rattus norvegicus G... [more]
CHKB_HUMAN1.032e-1527.87Choline/ethanolamine kinase OS=Homo sapiens GN=CHK... [more]
CHKA_RAT8.179e-1327.98Choline kinase alpha OS=Rattus norvegicus GN=Chka ... [more]
CHKA_MOUSE8.179e-1328.29Choline kinase alpha OS=Mus musculus GN=Chka PE=1 ... [more]
KICH_YEAST1.822e-1227.10Choline kinase OS=Saccharomyces cerevisiae GN=CKI1... [more]
EKIA_DICDI6.924e-1225.54Probable ethanolamine kinase A OS=Dictyostelium di... [more]
EKI2_HUMAN2.015e-1127.70Ethanolamine kinase 2 OS=Homo sapiens GN=ETNK2 PE=... [more]
CHKA_HUMAN2.631e-1126.61Choline kinase alpha OS=Homo sapiens GN=CHKA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263113 ID=DY263113; Name=DY263113; organism=Citrus clementina; type=EST; length=1339bp
CCTATATCTCAACTGGGTTCTTTTTATTTTTCACTCATCTTCTTGCATGT
TGCTTCTTCACAGACACACACACACAAACAGAGGTTGATATGATTCTTTT
TTTTTTTTTTTTGTAAATTTTAATTTTGCTTCTTGATTCTTGACCGCTTG
TTCAGAAAAAAATTTGCTTTGCGTGTTGCCTGAATCTTTCACTTTAATTT
TAGCACGATTGAGATTGAATCTTGAAAATTCATCATGTCCTTGATTTTAT
GTTCTTACTTTATTTACCTTTATTATTTCAGGTAAAGTTTTCAATTTTTG
TTGCAATCACCACTTTGTGCTGAGCTGACTACAAGAATGGCTATAAAGAC
AACTGAATTGTTACCAAGTTCTTCTCCAGAAGAATTAAAGAAAGTTCTTC
AGTCAGTAGCTTCCGACTGGGGAGATGTTATCGATGATTCGGATGCATTG
CAGGTGATTCCATTAAAAGGTGCAATGACTAATGAGGTTTACCAAATAGC
GTGGCCTGCAAAAAATAATGGTCTTGCTAGAAACGTTTTGGTCCGGATTT
ATGGAGAAGGCGTCGAGGTTTTCTTCAACAGGGATGATGAAATTAGAACC
TTTGAGTGCATGTCCAGCCAAGGCCAGGGGCCTAGGCTTCTCGGGCGGTT
CGGTGATGGAAGAGTTGAGGAGTTCATTCATGCCAGGACACTGTCGGCTG
CTGACATCCGTGACCCCAAAATCTCTGAGTTGGTAGCAGCTAAGATGAGA
GAATTTCATGATCTCAAAATGCCTGGTCCAAGGAAAGCACTACTATGGGA
CAGACTGAGGAAATGGGTTAGTGTGGCCAAAAGTTTCTGTTCTGCTAAAG
ATGCAAAGGAATTCTTGCTGTATACTCTGAAGGATGAAATCAGTATGCTG
GAAAAAGAATTGCCAAATGACCATCAAGAGATTGGCTTTTTGTCCAATGA
TCTTCAGTATGGAAACATTATGAATGAAAAAAAAACAGCTCAATTACAAA
AATTGAATAGAAATAGGCTAGTTAAAACCTGTTGCAAATGACCTTGCCAA
CCACTTTTGGGAAAATGGCACCAAATACCCCCCCAATACCCTCAAATTCG
GGAAAATGCTTAAACCCCAGGCGGGAAGGAACCCTCAAAAAATTACAAAA
AAACCCCTTATTTTGCCAAAAAAACACCCAACGAAACACAAAATAAAAAC
ACCGGTGTTTAAAAAAACCAAAAAAAATTCCCCCTTTAAAACACATATCT
TTGTGGGGGGTTTTGGGGGGAAACAAAATTTCTGGTCTTTTTGGGAAAAA
AAAAAAACTATTTTTTTTTTTTTTTAAAAGAAAAAAATA
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