DY263115

Overview
NameDY263115
Unique NameDY263115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 1.397e-80
Identity = 150/212 (70.75%), Postives = 169/212 (79.72%), Query Frame = 1
Query:  268 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 900
            +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV               KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D AL EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct:    1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 3.133e-56
Identity = 103/196 (52.55%), Postives = 137/196 (69.90%), Query Frame = 1
Query:  316 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRL 903
            PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +  G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QKYK  R+
Sbjct:   61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 5.909e-55
Identity = 102/192 (53.12%), Postives = 130/192 (67.71%), Query Frame = 1
Query:  316 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 891
            PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAKPQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV               KSVM +  G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  +    FN +QKYK
Sbjct:   45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYK 236          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.245e-54
Identity = 98/187 (52.41%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  316 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAKPQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G                +S+++  +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  +SA   NT
Sbjct:   94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNT 280          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 3.830e-54
Identity = 101/192 (52.60%), Postives = 132/192 (68.75%), Query Frame = 1
Query:  316 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 891
            PWL  GLGNPG KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GV               ++VM     +RE  RL IGIG PPG+MD +AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QKYK
Sbjct:   64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYK 255          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.455e-53
Identity = 104/192 (54.17%), Postives = 129/192 (67.19%), Query Frame = 1
Query:  316 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 891
            PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL KPQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV               K+V  +  G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G ++S   FN  QKYK
Sbjct:   51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 242          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.901e-53
Identity = 97/190 (51.05%), Postives = 135/190 (71.05%), Query Frame = 1
Query:  313 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 882
            +PWLFVGLGNPG  Y+GTRHNVGFEMID  AE++GIS++++  KA  G+G +GDAP++LAKPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP                  +S++N+ + NR+F RLRIGIGRPPG+MDP  F+L+ FN   +E +D A   G+E ++++  +G  +SA + NT Q
Sbjct:   54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQ 243          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.753e-39
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 1
Query:  304 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 612
            +V  PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+     KA FG+G V   PVLLAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGV
Sbjct:   56 SVINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGV 158          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.727e-33
Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:  319 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 858
            WL VGLGNPG KY G RHNVGF ++D  A  +G         A   +  VGDAPV+LAKP +YMNLSG     L+A+YK+P++R++V HD++ +P                  +S+  +  G+ ++ R+R+GIGRPPG+MD  +F+LQ F+   R+ +D  +    + ++ +++ GL ++
Sbjct:   35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.045e-31
Identity = 68/188 (36.17%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  319 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 879
            WL VGLGNPG++Y  TRHN+GF  ++  AE  G++      K+   +G +    V L KPQTYMNLSG++   L  +YK+ P   +LV +DD+ LP                  +S++    G  EF RLRIGIG+PPGQMD   ++L +F       +   L    + +++++S+GLT +   +N +
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKPQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYNPL 188          
The following BLAST results are available for this feature:
BLAST of DY263115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTHM_ARATH1.397e-8070.75Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
CRS2_MAIZE3.133e-5652.55Chloroplastic group IIB intron splicing facilitato... [more]
CRS2B_ARATH5.909e-5553.13Chloroplastic group IIB intron splicing facilitato... [more]
PTHC_ARATH2.245e-5452.41Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
CRS2_ORYSJ3.830e-5452.60Chloroplastic group IIB intron splicing facilitato... [more]
CRS2A_ARATH1.455e-5354.17Chloroplastic group IIB intron splicing facilitato... [more]
PTHM_ORYSJ1.901e-5351.05Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
CRS2L_ORYSJ7.753e-3975.73CRS2-like protein, chloroplastic OS=Oryza sativa s... [more]
PTH_THEFY3.727e-3338.33Peptidyl-tRNA hydrolase OS=Thermobifida fusca (str... [more]
PTH_CHLAD2.045e-3136.17Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263115 ID=DY263115; Name=DY263115; organism=Citrus clementina; type=EST; length=1228bp
ACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCCGCTTACAA
ACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGCCCACGCTG
CCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCTTCTAGCCG
TTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCGGCTTCGTT
CGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAGGAAACTGA
GAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTGGTTTCTGC
ACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAACCCGGGAGA
TAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGATCGACGCAT
TTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCAAAGCTACT
TTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACTCCTTGCAAAGCCACA
GACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCAGCTTATT
ATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACATGGGCTTA
CCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAGGCCACAA
TGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAATTTGCTC
GGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCCTAAAGCT
TTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTGATACTGC
TTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAAGGCTTGA
CAGAGAGTGCTAGACATTTCAACACCATACAAAAATACAAGCACATAAGA
TTGCAAAACATGCCAGCATGAGCTATTGGTACCTTCGATGACAACCACAA
AAGCACCGAATGGTTCTTCTGGCCGCATTTGTATAAAACTTACAATATTT
AAAATCCCCGAGGAGAGAGGAAGCGAAACCACCCATCCCCATGGAAAGAA
AACTTCAACCAACTTAAGTGAAGGGCTTAACCCAATACCAAACTGAATTG
GTTTGGCTGTTTTTTTTGCAGCAAATCAACCTTCCCAAAATTGGGAAAAT
TTTCCCCATGGCTAGGGCCCGAACCCAAAGGAAAGGGGCTGAACCATATT
AAAAAACAAAAAAACACCACCCCCCTTA
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