DY263135

Overview
NameDY263135
Unique NameDY263135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1331
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263135_ssr170 microsatellite DY263135_ssr170:170..181. BLAST: Citrus ESTs to Prunus persica proteins V1
DY263135_ssr487 microsatellite DY263135_ssr487:487..501. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263135 vs. ExPASy Swiss-Prot
Match: ERCC8_MOUSE (DNA excision repair protein ERCC-8 OS=Mus musculus GN=Ercc8 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.297e-14
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  589 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHXSVFVG*QQHEHGHKYAISSAIWYPVDTGLFVTGLYDHYVKVWDTIAL 984
            +  R++G   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG SD  V +YD++ A+      H        VG + H   HKY++ +  WYP DTG+F +  +D  +KVWDT  L
Sbjct:    5 LSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGSDGVVVLYDLENASRQP---HYTCKAVCSVG-RSHPDVHKYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132          
BLAST of DY263135 vs. ExPASy Swiss-Prot
Match: ERCC8_HUMAN (DNA excision repair protein ERCC-8 OS=Homo sapiens GN=ERCC8 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.785e-13
Identity = 39/132 (29.55%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  589 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHXSVFVG*QQHEHGHKYAISSAIWYPVDTGLFVTGLYDHYVKVWDTIAL 984
            +  R+ G   P        + R+  L+L+  +++   H G IN+L ++  E RY+LSG SD  + +YD++ ++      +        +G + H   H+Y++ +  WYP DTG+F +  +D  +KVWDT  L
Sbjct:    5 LSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQ---SYYTCKAVCSIG-RDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132          
BLAST of DY263135 vs. ExPASy Swiss-Prot
Match: ERCC8_BOVIN (DNA excision repair protein ERCC-8 OS=Bos taurus GN=ERCC8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.638e-13
Identity = 40/132 (30.30%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  589 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHXSVFVG*QQHEHGHKYAISSAIWYPVDTGLFVTGLYDHYVKVWDTIAL 984
            +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG SD  + +YD++ ++      +        VG + H   HKY++ +  WYP DTG+F +  +D  +KVWDT  L
Sbjct:    5 LSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHCSGVNTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQP---YYTCKAVCSVG-RSHPDVHKYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132          
BLAST of DY263135 vs. ExPASy Swiss-Prot
Match: YN19_SCHPO (Uncharacterized WD repeat-containing protein C577.09 OS=Schizosaccharomyces pombe GN=SPBC577.09 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.253e-12
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  598 REAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHK----GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHXSVFVG*QQHEHGHKYAISSAIWYPVDTGLFVTGLYDHYVKVWDTIAL 984
            RE GQ   +SF  ++  HRL  L L+   +I   H     GS+N+L +D T  + ++SG ++SS+ V+D+Q     E    I    +           HK+ I+   W+P D G+F +  +DH +KVWD   L
Sbjct:    8 REWGQEPNSSFRRQLLQHRLQRLALNPDVKIKRRHGAGILGSVNALSIDNTIHQLMVSGGANSSINVWDLQNIDQKEDEDLILDTLNAVPA----RTSHKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTL 136          
The following BLAST results are available for this feature:
BLAST of DY263135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ERCC8_MOUSE4.297e-1431.82DNA excision repair protein ERCC-8 OS=Mus musculus... [more]
ERCC8_HUMAN2.785e-1329.55DNA excision repair protein ERCC-8 OS=Homo sapiens... [more]
ERCC8_BOVIN3.638e-1330.30DNA excision repair protein ERCC-8 OS=Bos taurus G... [more]
YN19_SCHPO5.253e-1232.33Uncharacterized WD repeat-containing protein C577.... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10DF05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263135 ID=DY263135; Name=DY263135; organism=Citrus clementina; type=EST; length=1331bp
CGAAATAAAGTGAGCCGGTTGACAAAAGCATTGGCTTGGTTTCAATTTCA
CATTTCAAAAAAATTTCGGTTTATATGAAATTCGAACGGGCAAAATCGAA
CCAATCCTATAATTTTGTTATTTTTTTAATTTTTATGTTTGTAGGTTCAT
TTTGTCTATCTAAAAAAAAAATAATAATAATTCCCATCGTCCCAAATTCG
CCTGTCCTAAGTTGTACCATTGAACTTAGGTCACGGTAGGTTCGAGCCGA
CGATCCTCAACTGGGTTGGTTCTTTTACTTTATTTACAATTGCAAATCGA
TCCATGTTCGCAACTCCGGTCGAACCTTATCCAAAACGAACTTGTCAGCC
CTATCCAACTTTAACCGAAACCCGAGAACTTTTTCATCTTCCGCGCCGCC
GCCTCACCAGGCACAGCTGCCGACCGCCAGCCGTCCAGTTCGCGTCGCGC
CGTGCAATTTATTTGGTCGATCGCCGGTGACGCCTTCGCCGCCGCCGCCG
CCGTCACGCCGCTCCGTCGACGTTGATTCTGAGAGAGAAGAGAGAGCGAG
TTTTGAAGGCCGAAGATGCTTGGAGAATGTGGAAGGAAATCGGAGGCAGA
GAAGCGGGTCAAATCCGCCCAAATTCTTTCGCGAATCGGGTTAAATCCCA
TCGACTCTCCACTCTACAACTCTCCAATTACAAAGAGATAGTTTCTCCTC
ATAAAGGCTCTATCAATTCTCTCCAGGTTGATTTGACAGAGGAACGGTAT
TTGTTGTCCGGTGCATCAGATTCATCCGTAGCTGTTTATGATGTTCAACG
GGCCACTGATTATGAAGGTGGTGGCCATATTGCTAAGCACANGAGTGTGT
TTGTGGGTTGACAGCAGCATGAACATGGTCACAAGTATGCCATATCCTCA
GCCATTTGGTATCCTGTTGACACGGGACTTTTTGTAACGGGATTATATGA
TCATTATGTAAAAGTTTGGGATACCATTGCACTCGGGTAGTAATGACTTC
AAAATGCCTGGAAAGGTTAAATAAACTGGCATGTCTCCTTGGCAGCATCC
CTAAGGTTATTGGTGCTGGAAACCAAAAATTTCAAATCCCCCTTTGTAAA
ATGCTTCTGGGGGAAACCCCCAAACCTAACTGGGGCCTCCGGGAGGCATA
AGACGGGAAAAAGGTCAAAATCCCAGGAAGGGGAATTTGGAAAAAGGGGG
GGCCTGGAGAGGGGGAAAAAACTTTCCCGGGGGAACAAAAAACAAGGGGT
GAAGATATTTTTTTCGGGTTTTTGGAAAAATTATCCCCACAAAAAACACC
CCCCGTGGGGGAAGAAAAAAAAACACACCCC
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