DY263141

Overview
NameDY263141
Unique NameDY263141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1277
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263141 vs. ExPASy Swiss-Prot
Match: APC8_SCHPO (Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe GN=cut23 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.176e-15
Identity = 63/221 (28.51%), Postives = 93/221 (42.08%), Query Frame = 1
Query:  421 RNELRTAISQLNGRCLYSAAKWAAEQLVGIKQDPAKYTPSNTRFQRGSSSICRRFRTNEISSTLVAGVSYVSTPVMEED-----------EVVDSDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGXXXXXXXXXXXXGPLGKSDAVNRELISLERELSTLRKNGTMESLILYLYGLVLKIKEVRIWLVYF**SLGIATLGNWNSWVGTS 1050
            RN L   IS+ + R L  A +WAAE L G+     ++ P                              + STP  E D           EV + + YLLAKSYFDC+E+ RAA+ L++    KS+FLR Y+ YLAG                   + NRE   +   L +L   G  +  +LYL G+V + ++     + F  S  +     W++W+  S
Sbjct:   24 RNCLLKCISECSERGLVYAVRWAAEMLNGMNPIEMEHIP------------------------------FSSTPTGEFDLDPDMANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELS 214          
BLAST of DY263141 vs. ExPASy Swiss-Prot
Match: CDC23_HUMAN (Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.058e-14
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  640 PVMEEDEVVDSDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGXXXXXXXXXXXXGPLGKSDAVNRELISLERELSTLRKNGTMESLILYLYGLVL-KIKEVRIWLVYF**SLGIATLGNWNSWVGTSSLV 1059
            P + E++  D D Y LAK+YFD +EY RAAH L     KK+ FL  Y+ YL+G            GPL K    N  L  L  ELS   +   ++   LYLYG+VL K+  V+  +  F  +  +  L +W +W+   +L+
Sbjct:   74 PPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPL-HWGAWLELCNLI 213          
BLAST of DY263141 vs. ExPASy Swiss-Prot
Match: CDC23_BOVIN (Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.058e-14
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  640 PVMEEDEVVDSDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGXXXXXXXXXXXXGPLGKSDAVNRELISLERELSTLRKNGTMESLILYLYGLVL-KIKEVRIWLVYF**SLGIATLGNWNSWVGTSSLV 1059
            P + E++  D D Y LAK+YFD +EY RAAH L     KK+ FL  Y+ YL+G            GPL K    N  L  L  ELS   +   ++   LYLYG+VL K+  V+  +  F  +  +  L +W +W+   +L+
Sbjct:   74 PPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPL-HWGAWLELCNLI 213          
BLAST of DY263141 vs. ExPASy Swiss-Prot
Match: CDC23_MOUSE (Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.299e-14
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  640 PVMEEDEVVDSDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGXXXXXXXXXXXXGPLGKSDAVNRELISLERELSTLRKNGTMESLILYLYGLVL-KIKEVRIWLVYF**SLGIATLGNWNSWVGTSSLV 1059
            P + E++  D D Y LAK+YFD +EY RAAH L     KK+ FL  Y+ YL+G            GPL K    N  L  L  ELS   +   ++   LYLYG+VL K+  V+  +  F  +  +  L +W +W+   +L+
Sbjct:   74 PPLTEEDAQDVDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSRKHQARGLDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPL-HWGAWLELCNLI 213          
The following BLAST results are available for this feature:
BLAST of DY263141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
APC8_SCHPO8.176e-1528.51Anaphase-promoting complex subunit 8 OS=Schizosacc... [more]
CDC23_HUMAN4.058e-1435.46Cell division cycle protein 23 homolog OS=Homo sap... [more]
CDC23_BOVIN4.058e-1435.46Cell division cycle protein 23 homolog OS=Bos taur... [more]
CDC23_MOUSE5.299e-1435.46Cell division cycle protein 23 homolog OS=Mus musc... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10DF11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263141 ID=DY263141; Name=DY263141; organism=Citrus clementina; type=EST; length=1277bp
CCGAATTAGATCCCAACCCGATAATTTTGGGATTGGATCGGATATTTTAC
CCAACCCTCTACTTGAATGTAGTTTTTAGTAGTACAAGAAACCTACCCAA
AGTCGGAAGAATCACAGTATCGATCAATAAATAATTAATCCAGTTTCATT
GTTGCCAAAAATTGAAGCTTATAAAAGAACTTGGGGAAGATCTAAAGCTT
CTTTTTTGCACGTTAACATTTGGCTTGCTGCTTCCATTGTTCGACATTGC
GACGGCACTCACCGTGGGCGGCGCCTGCAGCCGGCTTGCTCCATCGCCGT
GCTCCATAACTGGCGCTTCACCGCGTACGCGCGAATCCTGCAACTTGCTT
GCGTGCAACTAGTTGGAAGCATTAATTCACCGAAGGAAAATAGAGATTGA
TGAGTTTGACAGAGAGTTGTAGAAATGAACTCCGAACTGCGATTAGTCAA
CTCAACGGCAGATGCCTTTACTCTGCTGCCAAATGGGCAGCAGAACAGCT
GGTGGGAATCAAGCAAGACCCTGCAAAATATACTCCTTCAAACACCAGAT
TCCAGCGTGGAAGCTCAAGCATATGCAGAAGGTTCCGCACAAATGAGATA
AGTTCAACACTAGTGGCTGGTGTCTCTTATGTGTCCACTCCTGTGATGGA
GGAGGATGAAGTGGTGGATAGTGACTTTTACCTTTTGGCAAAGTCGTACT
TTGATTGTCGAGAGTACAGGAGGGCTGCTCATGTCCTCCGTGATCAAACT
GGAAAGAAATCGGTGTTTTTGCGCTGTTATGCACTTTATCTGGCTGGAGA
GAAGCGGAAGGAAGAAGAAATGATAGAACTTGAGGGTCCATTAGGCAAGA
GTGATGCTGTGAACCGTGAATTAATTTCTCTGGAGAGGGAGTTATCTACT
CTTCGGAAGAATGGGACAATGGAATCCCTCATTTTGTACTTATATGGTCT
TGTGCTTAAGATAAAGGAAGTGAGAATCTGGCTCGTATATTTCTAGTGAA
GTCTGGGAATAGCTACCCTTGGGAATTGGAATTCCTGGGTGGGAACTTCA
TCCTTGGTGCCCCACAATTGAATTTTGAAAAAGAATAATCTCAAAAAACC
ATTGGAAAGAAGGGTTTCTTTTTTGCGCCAAACTTTACAAGAAACCAGGA
AGCGCAAAAGGAAAAAATTGGAAAAAAAATAAAAAAACCCTACAGGGGGC
GATTTTCGGGGTTTCGCCAAAATTTACCCAACGGGGGGCCCAAATTGTGT
GAAAAAAACCCCCGAAAAGAGAGAATT
back to top