DY263143

Overview
NameDY263143
Unique NameDY263143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1248
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263143_ssr291 microsatellite DY263143_ssr291:291..302. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.753e-30
Identity = 72/203 (35.47%), Postives = 104/203 (51.23%), Query Frame = 3
Query:  510 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT------------------KLTWSWRSRELGEFQCYDKYMLASFECLCSREWDA*MGRWGVLLLLAI*CKILNILNFFKLTTVKGNSKGKFFL 1064
            P  YDW  Y  L  L   CGLK++A+++FHQCG   GD   +PLP+WVL+  + DPD+ Y++R G RN EY+S+G D  P+  GR+ I+ Y+D+M++FR+    LL + +                        W+   +GEFQCYDKY+  SF+   ++   A    W +         +     FFK        KGKFFL
Sbjct:   65 PKEYDWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVNIPLPKWVLDIGESDPDIFYTNRSGIRNQEYLSIGVDNKPIFHGRTAIEIYSDYMKSFRENMSDLLKSEVIIDIEVGLGPAGELRYPSYPQNQGWQFPGIGEFQCYDKYLRESFKAAAAK---AGHSEWELPDDAGTYNDVPESTEFFKTNGTYLTEKGKFFL 264          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 2.991e-30
Identity = 64/155 (41.29%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  510 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT----------------KLTWSWRSRELGEFQCYDKYMLASFE 920
            P  YDW  Y +L  L   CGLK++A+++FHQCG   GD  ++P+PQW+L+  DK+PD+ Y++R G RN EY+SLG D   + +GR+ ++ Y DFM +FRD     L  G I+                   T  W    +GEFQCYDKYM+A ++
Sbjct:   66 PKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYMVADWK 220          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.102e-30
Identity = 77/257 (29.96%), Postives = 116/257 (45.14%), Query Frame = 3
Query:  348 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT------------------KLTWSWRSRELGEFQCYDKYMLASFECLCSREWDA*MGRWGVLLLLAI*CKILNILNFFKLTTVKGNSKGKFFL 1064
            N  PV+V LP     +    +  + + +    L                  +  P  YDW  Y  L  L   CGLK++A+++FHQCG   GD   +P+PQWVL+  + DPD+ Y++R G R+ EY+++G D  P+  GR+ I+ Y+D+M++FR+     L + +                        W    +GEFQCYDKY+ A F+   +R   A    W +         +     FFK        KGKFFL
Sbjct:   11 NYVPVYVMLPLGVVSVNNVFEDPEGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTIGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFLKSEVIIDIEVGLGPAGELRYPSYPQNQGWVFPGIGEFQCYDKYLKAEFKAAAAR---AGHSEWELPDDAGTYNDVPESTEFFKTNGTYLTEKGKFFL 264          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.307e-29
Identity = 70/203 (34.48%), Postives = 102/203 (50.25%), Query Frame = 3
Query:  510 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT------------------KLTWSWRSRELGEFQCYDKYMLASFECLCSREWDA*MGRWGVLLLLAI*CKILNILNFFKLTTVKGNSKGKFFL 1064
            P  YDW  Y  L  L   CGLK++A+++FHQCG   GD   +P+PQWVL+  + DPD+ Y++R G R+ EY+++G D  P+  GR+ I+ Y+D+M++FR+     L + +                        W    +GEFQCYDKY+ A F+   ++   A    W +         I     FFK        KGKFFL
Sbjct:   65 PKEYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTVGVDNKPIFHGRTAIEIYSDYMKSFRENMSEFLKSELIIDIEVGLGPAGELRYPSYPQNQGWVFPGIGEFQCYDKYLKADFKAAAAK---AGHSEWELPDDAGTYNDIPESTEFFKTNGTYLTEKGKFFL 264          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 5.641e-29
Identity = 73/209 (34.93%), Postives = 106/209 (50.72%), Query Frame = 3
Query:  510 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT----------------KLTWSWRSRELGEFQCYDKYMLASFECLCSR----EWDA--*MGRWGVLLLLAI*CKILNILNFFKLTTVKGNSKGKFFL 1064
            P  YDWR Y  L  L   CGL ++A+++FHQCG   GD   +P+PQWVL+  + + D+ Y++R G RN EY+++G D  P+  GR+ I+ Y+D+M++FR+     L  G II                   +  W    +GEFQCYDKY+ A F+   +R    EW+     G++           +     FFK        KGKFFL
Sbjct:   65 PKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYN---------DVPESTGFFKSNGTYVTEKGKFFL 264          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.622e-29
Identity = 68/217 (31.34%), Postives = 104/217 (47.93%), Query Frame = 3
Query:  360 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITKL-----------------TWSWRSRELGEFQCYDKYMLASFECLCSR----EWD 944
            V+V LP D+  +  + ++   +    + L                     P  YDW  Y  L  L    GLK++A+++FHQCG   GD   +P+PQWV +   +DPD+ Y+D  G RN+EY++LG D  P+  GRS +Q Y D+M +FR+  +  L A +I  +                 +  W    +GEF CYDKY+ A F+   +     EW+
Sbjct:   12 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWE 228          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.622e-29
Identity = 68/217 (31.34%), Postives = 104/217 (47.93%), Query Frame = 3
Query:  360 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITKL-----------------TWSWRSRELGEFQCYDKYMLASFECLCSR----EWD 944
            V+V LP D+  +  + ++   +    + L                     P  YDW  Y  L  L    GLK++A+++FHQCG   GD   +P+PQWV +   +DPD+ Y+D  G RN+EY++LG D  P+  GRS +Q Y D+M +FR+  +  L A +I  +                 +  W    +GEF CYDKY+ A F+   +     EW+
Sbjct:   12 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWE 228          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.775e-28
Identity = 78/236 (33.05%), Postives = 117/236 (49.58%), Query Frame = 3
Query:  510 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITKL-----------------TWSWRSRELGEFQCYDKYMLASFECLCSR----EWD--A*MGRWGVLLLLAI*CKILNILNFFKLTTVKGNSKGKFFL*RVTR*VAFFWGKKNAGKPKTIFPGNK 1145
            P  YDW  Y  L  L +  GLK++A+++FHQCG   GD   +P+PQWV +  D DPD+ Y++R G R++EY+S+G D LP+  GR+ +Q Y+D+M +F++    L+ A +I  +                 +  W    +GEFQCYDKY+   F+   ++    EWD     G +                 FFK      + KGKFF+   +     F G +  G+   IF G K
Sbjct:   67 PKQYDWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVTIPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLSIGVDNLPLFAGRTAVQLYSDYMSSFKENMADLIEAGVIVDIEVGLGPAGELRYPSYPQSQGWVFPGIGEFQCYDKYLKKDFKEAAAKAGHPEWDLPEDAGEYN---------DKPEETGFFKKDGTYVSEKGKFFMTWYSN-KLIFHGDQILGEANKIFAGLK 292          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.042e-27
Identity = 68/217 (31.34%), Postives = 103/217 (47.47%), Query Frame = 3
Query:  360 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT----------------KLTWSWRSRELGEFQCYDKYMLASFECLCSR----EWD 944
            V+V LP D   +  K ++   +    K L                     P  YDW  Y  +  L    GLK++A+++FHQCG   GD   +P+PQWV +    DPD+ Y++R G RN+EY++LG D  P+  GR+ +Q Y D+M +FR+  +  L  G I+                   +  W    +GEF CYDKY+ A F+   ++    EW+
Sbjct:   12 VYVMLPLDVVSVDNKFEKGDEIRAQLKKLTEAGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVNIPIPQWVRDVGATDPDIFYTNRGGTRNIEYLTLGVDDQPLFHGRTAVQMYADYMASFRENMKKFLDAGTIVDIEVGLGPAGEMRYPSYPQSQGWVFPGIGEFICYDKYLEADFKAAAAKAGHPEWE 228          
BLAST of DY263143 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.536e-26
Identity = 67/217 (30.88%), Postives = 98/217 (45.16%), Query Frame = 3
Query:  360 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT------------------KLTWSWRSRELGEFQCYDKYMLASFECLCSR----EWD 944
            V+V LP D   +    ++        K L                     PGVYDW  Y  +  L    GLK++A+++ HQCG   GD   +P+PQWV +    +PD+ Y++R G  N+EY++LG D  P+  GR+ IQ Y D+M++FR+     L A +                     +  W    +GEF CYDKY+ A F+         EWD
Sbjct:   12 VYVMLPLDVITVDNTFEKEDETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDVGKSNPDIFYTNRSGLTNIEYLTLGVDDQPLFHGRTAIQLYADYMKSFRENMADFLDAGVVVDIEVGLGPAGEMRYPSYPQSQGWVFPGVGEFICYDKYLQADFKAAAEEAGHPEWD 228          
The following BLAST results are available for this feature:
BLAST of DY263143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMYB_MEDSA1.753e-3035.47Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_IPOBA2.991e-3041.29Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_VIGUN5.102e-3029.96Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP3.307e-2934.48Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_SOYBN5.641e-2934.93Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_HORVU9.622e-2931.34Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP9.622e-2931.34Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_ARATH4.775e-2833.05Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_WHEAT4.042e-2731.34Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE1.536e-2630.88Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10DG01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263143 ID=DY263143; Name=DY263143; organism=Citrus clementina; type=EST; length=1248bp
CGAACTCGCACGTTCTGTTTCTTTTTGCTTTTTCATTTTTACCTCCTCCT
CTCGCTCTCTCTCCTAAGTTTCTGCAAAAACATTTTAATTCGATTTTAAT
TCGAAAACCCAACCCTAACATTAAAACAATGGCAATTGCAACGTTTGCCC
CATCGTTCTGCTGTACTCGGACCGAGCCAACTCAGTTGCCTCGGTTCCGC
TTAACTCACTCACACAAACTCCAGAGCCAAACGCGAAGACTCAGCGTCTC
CTGCCGTCTCAATTCATCCAATTCGTTATCTCCGGCCGATAACAACAACA
ACAATAGGTACAAACTCCACGATGGCGCCTCGTCGCAGGGCCGTCGGAAC
GGTTCACCAGTCTTCGTGAAGCTTCCGGAAGATTCTACAATGATAGGAGG
AAAAGTGAAGCGACGGAAGGCGATGGCGCAGTCGTTCAAGGCTCTGGCAG
CGGCCGGCGTGGAGGGCGTCGTGGTGGAGGTGTGGTGGGGCGTCGTGGAG
AGGGATCGGCCGGGCGTTTATGATTGGAGAGGTTATTTTGACTTGATTGT
TTTGGCCAGCAATTGTGGTTTGAAAGTTCGAGCCCTTTTGGCGTTTCATC
AGTGTGGTTCTGGCCCCGGCGACCCCAAATGGGTTCCTCTTCCCCAATGG
GTGCTTGAAGAAATTGATAAAGATCCAGATTTAGCATATTCTGACAGATT
TGGAAGAAGAAATATGGAATACATTTCCCTGGGATGTGATATTCTACCTG
TCCTGCGGGGACGATCACCAATCCAAGCTTATACAGATTTTATGAGGAAC
TTCAGAGACACTTTTAGACCTTTACTTGGAGCTATTATAACTAAGCTAAC
GTGGTCTTGGCGCTCACGTGAACTTGGAGAGTTTCAATGCTACGATAAGT
ATATGCTTGCTTCTTTTGAATGCCTGTGCTCGAGAGAATGGGATGCGTGA
ATGGGGAGATGGGGGGTCCTATTGTTGCTAGCAATTTGATGCAAGATCCT
GAACATACTGAATTTTTTTAAACTGACAACGGTTAAGGGAAACAGCAAAG
GGAAATTTTTTCTTTGAAGGGTAACTAGGTAGGTTGCTTTCTTCTGGGGG
AAAAAAAATGCAGGGAAGCCGAAAACCATTTTTCCGGGGAACAAAAAGTA
AAAAACTCCCGCAAAAAGGAAGGGGGGAAAACCCCGGGGGCAAATAATGG
GGAACACCCACACCAACTCCCCCTCCGAAAACAAAGGGGGGGGGGGGC
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