DY263158

Overview
NameDY263158
Unique NameDY263158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1336
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263158_ssr328 microsatellite DY263158_ssr328:328..342. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGA17_ARATH (Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 2.907e-68
Identity = 122/200 (61.00%), Postives = 144/200 (72.00%), Query Frame = 2
Query:  251 TVLISLLAFLG-FVPVFAPLPSLAFXXXXXXXXXXXXXXXVNGRKFEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            ++L+ +L  +G +VPVFA LPSL++               ++ RKF I+DD F KDG  FQIIGGDLHYFR+LP++WEDRLLRA ALGLNTIQ YVPWNLHEPKPGK+VF GI DLVSFLKLC+KLD LVMLR GPYIC EWDLGGF             R+SD  YL+LVERWW VLLPK+ PLLY  G P +MV + +
Sbjct:   19 SMLLLVLVVVGIYVPVFALLPSLSYTPQSLPSAIPQDEKMIS-RKFYIKDDNFWKDGNRFQIIGGDLHYFRVLPEYWEDRLLRANALGLNTIQVYVPWNLHEPKPGKMVFEGIGDLVSFLKLCEKLDFLVMLRAGPYICGEWDLGGFPAWLLAVKPRLQLRTSDPVYLKLVERWWDVLLPKVFPLLYSNGGPVIMVQIEN 217          

HSP 2 Score: 34.2686 bits (77), Expect = 2.907e-68
Identity = 19/53 (35.85%), Postives = 25/53 (47.17%), Query Frame = 3
Query:  843 TTEGGTRGNSFKGTIRGKPLFAPVDFPPGAKAGQNFNFNSYSMAPESPPPLFS 1001
            TT+GGT+    KGT+    +++ VDF  G      F       AP   PPL S
Sbjct:  248 TTDGGTKETLDKGTVPVADVYSAVDFSTGDDPWPIFKLQKKFNAPGRSPPLSS 300          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL8_ORYSJ (Beta-galactosidase 8 OS=Oryza sativa subsp. japonica GN=Os05g0539400 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.282e-59
Identity = 100/157 (63.69%), Postives = 118/157 (75.16%), Query Frame = 2
Query:  377 RKFEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            R+F +E+D F KDG PFQI+GGD+HYFRI+P++W+DRLLRAKALGLNTIQTYVPWNLHEPKP    F G  D+ S+L+L  +LD+LVMLR GPYIC EWDLGGF             RSSD  YL LV+RWWGVLLPKI PLLY  G P +MV + +
Sbjct:   32 RRFWVENDTFWKDGAPFQIVGGDVHYFRIVPEYWKDRLLRAKALGLNTIQTYVPWNLHEPKPLSWEFKGFTDIESYLRLAHELDMLVMLRVGPYICGEWDLGGFPPWLLTIEPTIELRSSDSTYLSLVDRWWGVLLPKIAPLLYSNGGPIIMVQIEN 188          

HSP 2 Score: 33.8834 bits (76), Expect = 1.282e-59
Identity = 20/53 (37.74%), Postives = 23/53 (43.40%), Query Frame = 3
Query:  843 TTEGGTRGNSFKGTIRGKPLFAPVDFPPGAKAGQNFNFNSYSMAPESPPPLFS 1001
            TT+GG  GN   GTI    +FA VDF  G+     F        P    PL S
Sbjct:  219 TTDGGAIGNLKNGTILQDDVFAAVDFDTGSNPWPIFQLQKEYNLPGKSAPLSS 271          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL_MOUSE (Beta-galactosidase OS=Mus musculus GN=Glb1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.862e-41
Identity = 91/189 (48.15%), Postives = 113/189 (59.79%), Query Frame = 2
Query:  287 VPVFAPLPSLAFXXXXXXXXXXXXXXXVNGRKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            VP+  PLP LA                V  R F+++   D F KDG+PF+ I G +HYFRI   +WEDRLL+ K  GLN IQ YVPWN HEP+PG+  FSG  D+  F++L  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W  VLLPK+ PLLY  G P + V V +
Sbjct:    4 VPLCTPLPLLALLQLLGAAHGIYN---VTQRTFKLDYSRDRFLKDGQPFRYISGSIHYFRIPRFYWEDRLLKMKMAGLNAIQMYVPWNFHEPQPGQYEFSGDRDVEHFIQLAHELGLLVILRPGPYICAEWDMGGL-PAWLLEKQSIVLRSSDPDYLVAVDKWLAVLLPKMKPLLYQNGGPIITVQVEN 188          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL_FELCA (Beta-galactosidase OS=Felis catus GN=GLB1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.862e-41
Identity = 83/156 (53.21%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  380 KFEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            K +   + F KDG+PF+ I G +HYFR+   +W+DRLL+ K  GLN IQTYVPWN HEP+PG+  FSG  D+  FLKL  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W GVLLPK+ PLLY  G P + V V +
Sbjct:   34 KIDYGHNRFLKDGQPFRYISGSIHYFRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPQPGQYQFSGEHDVEYFLKLAHELGLLVILRPGPYICAEWDMGGL-PAWLLLKESIILRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVEN 188          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL_CANFA (Beta-galactosidase OS=Canis familiaris GN=GLB1 PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 9.578e-41
Identity = 82/159 (51.57%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  377 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            R F I+   + F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLN IQTYVPWN HEP+PG+  FSG  D+  F+KL  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W GVLLPK+ PLLY  G P + + V +
Sbjct:   31 RTFTIDYSHNRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPQPGQYQFSGEQDVEYFIKLAHELGLLVILRPGPYICAEWDMGGL-PAWLLLKESIILRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITMQVEN 188          

HSP 2 Score: 24.2534 bits (51), Expect = 9.578e-41
Identity = 17/48 (35.42%), Postives = 22/48 (45.83%), Query Frame = 3
Query:  843 TTEGGTRGNSFKGTIRGKPLFAPVDFPPGAKAGQNFNFNSYSMAPESP 986
            TT+G        G ++G  L+A VDF PGA     F     S  P+ P
Sbjct:  220 TTDGANEKFLQCGALQG--LYATVDFGPGANITAAFQIQRKS-EPKGP 264          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL_MACFA (Beta-galactosidase OS=Macaca fascicularis GN=GLB1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.022e-39
Identity = 84/159 (52.83%), Postives = 103/159 (64.78%), Query Frame = 2
Query:  377 RKFEI--EDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            R FEI    D F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLNTIQTYVPWN HEP PG+  FS   D+  FL+L  +L LLV+LRPGPYICAEW++GG              RSSD  YL  V++W GVLLPK+ PLLY  G P + V V +
Sbjct:   30 RVFEIAYSQDRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNTIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKEAILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVEN 187          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL_HUMAN (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 2.973e-39
Identity = 83/159 (52.20%), Postives = 103/159 (64.78%), Query Frame = 2
Query:  377 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            R FEI+   D F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLN IQTYVPWN HEP PG+  FS   D+  FL+L  +L LLV+LRPGPYICAEW++GG              RSSD  YL  V++W GVLLPK+ PLLY  G P + V V +
Sbjct:   30 RMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVEN 187          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL_PONAB (Beta-galactosidase OS=Pongo abelii GN=GLB1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.883e-39
Identity = 83/159 (52.20%), Postives = 103/159 (64.78%), Query Frame = 2
Query:  377 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            R FEI+   D F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLN IQTYVPWN HEP PG+  FS   D+  FL+L  +L LLV+LRPGPYICAEW++GG              RSSD  YL  V++W GVLLPK+ PLLY  G P + V V +
Sbjct:   30 RMFEIDYSRDCFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLQLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVEN 187          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: BGAL_BOVIN (Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.130e-38
Identity = 81/159 (50.94%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  377 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            R F+I+   + F KDG+PF+ I G +HYFR+   +W+DRLL+ K  GLN IQTYV WN HE +PG+  FSG  D+  F++L  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W GVLLPK+ PLLY  G P + V V +
Sbjct:   29 RTFQIDYRRNRFLKDGQPFRYISGSIHYFRVPRFYWKDRLLKMKMAGLNAIQTYVAWNFHELQPGRYNFSGDHDVEHFIQLAHELGLLVILRPGPYICAEWDMGGL-PAWLLEKKSIVLRSSDPDYLAAVDKWLGVLLPKMRPLLYKNGGPIITVQVEN 186          
BLAST of DY263158 vs. ExPASy Swiss-Prot
Match: GLB1L_MOUSE (Beta-galactosidase-1-like protein OS=Mus musculus GN=Glb1l PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.804e-36
Identity = 74/152 (48.68%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  392 EDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKITPLLYDIGSPNVMVPVNH 847
            E D F  DG PF+ + G LHYFR+ P  W DRLL+ +  GLN +Q YVPWN HEP+PG   F+G  DL++FL    K++LLV+LRPGPYICAEW++GG              R+SD A+L+ V+ W+ VLLPKI P LY  G   + + V +
Sbjct:   31 EHDRFLLDGVPFRYVSGSLHYFRVPPVLWADRLLKMQLSGLNAVQFYVPWNYHEPEPGIYNFNGSRDLIAFLNEAAKVNLLVILRPGPYICAEWEMGGL-PSWLLRNPNIHLRTSDPAFLEAVDSWFKVLLPKIYPFLYHNGGNIISIQVEN 181          
The following BLAST results are available for this feature:
BLAST of DY263158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
BGA17_ARATH2.907e-6861.00Beta-galactosidase 17 OS=Arabidopsis thaliana GN=B... [more]
BGAL8_ORYSJ1.282e-5963.69Beta-galactosidase 8 OS=Oryza sativa subsp. japoni... [more]
BGAL_MOUSE1.862e-4148.15Beta-galactosidase OS=Mus musculus GN=Glb1 PE=2 SV... [more]
BGAL_FELCA1.862e-4153.21Beta-galactosidase OS=Felis catus GN=GLB1 PE=2 SV=... [more]
BGAL_CANFA9.578e-4151.57Beta-galactosidase OS=Canis familiaris GN=GLB1 PE=... [more]
BGAL_MACFA1.022e-3952.83Beta-galactosidase OS=Macaca fascicularis GN=GLB1 ... [more]
BGAL_HUMAN2.973e-3952.20Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV... [more]
BGAL_PONAB3.883e-3952.20Beta-galactosidase OS=Pongo abelii GN=GLB1 PE=2 SV... [more]
BGAL_BOVIN1.130e-3850.94Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1[more]
GLB1L_MOUSE1.804e-3648.68Beta-galactosidase-1-like protein OS=Mus musculus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10DH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263158 ID=DY263158; Name=DY263158; organism=Citrus clementina; type=EST; length=1336bp
AAATTTAGAGATGAAGCTGGAAAAATAAAGCAAGATGAGGCAACAAAGCG
TTAGCTCCTGGCAGGTGGCATTTTGATTTGAGGAAATACACAATCCAGTA
GAAGTGGAAATGCATAGTGAGAGTGACGGCACTACTAGTACAGCTACAAC
GAGAGGCCCAAGAGAGTCAACGACGACGAAGACAGTCAAACGCGCGATGG
CGAGAATGCGAAGGCGGAGCACCGCCACCACCAATACGACGTTGTTCCTC
ACCGTTTTGATATCGCTCTTGGCCTTTCTTGGCTTCGTCCCTGTCTTCGC
TCCCCTCCCTTCTCTCGCCTTCCGCAATCCTCCTCCTCCTCCTCACCACC
GTCATCGCCACAATAACGTGAATGGTCGAAAGTTTGAGATTGAGGATGAC
ATGTTCCGGAAAGATGGTGAGCCATTTCAGATTATTGGTGGTGACCTGCA
TTATTTCCGCATTCTCCCTCAGCACTGGGAAGATAGGCTTTTGCGAGCAA
AGGCTTTAGGCTTGAATACCATTCAAACTTATGTTCCTTGGAATCTGCAT
GAACCAAAACCTGGCAAGCTGGTTTTTAGTGGCATTGCAGATCTTGTTTC
ATTTCTTAAACTTTGTCAGAAGCTGGATTTGCTTGTTATGCTTCGACCTG
GGCCTTATATATGTGCAGAGTGGGATTTGGGGGGTTTCCCTGCTTGGTTA
CTTGCCAAAAAGCCGGCTCTCAAGCTAAGGTCATCTGATCGTGCTTACCT
TCAGTTGGTTGAAAGATGGTGGGGAGTCCTACTTCCGAAAATAACTCCTC
TGCTTTATGACATTGGAAGCCCGAATGTAATGGTTCCGGTAAACCACAGA
AGGAGGTACCAGGGGAAACTCTTTTAAAGGGACCATCCGTGGAAAACCCC
TTTTTGCACCTGTTGACTTCCCACCGGGTGCTAAGGCCGGCCAAAATTTT
AATTTCAATAGCTATTCAATGGCCCCCGAAAGTCCCCCCCCGCTTTTCTC
GAAAATTTATAAAGGTTGGCTTAAAAAGGGGGAAAAAAAAATGCCAAAAA
AAAAGCGGATTTTAACCCTTCCTTATCTTAAAAAAAAATTATGTCCCAAA
AGCATATCGCTCTGGCTTTAAAGGGGACAGGGGGGGGAACAAACCTTTTG
AGTTTTTCCACCAAACAAAAAAACGTGGTAACAGATATAATCCTTTATTA
TCACCCCACCTAATCTTCATTCTTCCTATAATTTATAAAATATCACCCAT
TTTATCGGTACAACTGGGAGGTTGGTGGTGAAATAACCCCTACAAAAAAT
AACACAAAACACAATAACGCAGAGGAGGGATGGGTA
back to top