DY263160

Overview
NameDY263160
Unique NameDY263160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1323
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263160_ssr193 microsatellite DY263160_ssr193:193..204. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2409 contig Ccv1_Contig2409:1..1323. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263160 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.450e-48
Identity = 98/165 (59.39%), Postives = 108/165 (65.45%), Query Frame = 3
Query:   75 TGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKV*WTQDLC*FIFV*TRV*FMLIYFCLDACLIRVFHVSSFKQIWMGCCSVQICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATV 569
            T LRIG AQ+WWEKGL+ NMRE++SAQ+LV+SL +AGDKLVVVDFFSPGCGGCKALHPK                                                  ICQ AEMNPDVQFLQVNYEEHKSMCYSL VHVLPFFRFYRG+ GR+CSFSCTNAT+
Sbjct:   80 TTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPK--------------------------------------------------ICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATI 194          
BLAST of DY263160 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.826e-42
Identity = 87/165 (52.73%), Postives = 102/165 (61.82%), Query Frame = 3
Query:   75 TGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKV*WTQDLC*FIFV*TRV*FMLIYFCLDACLIRVFHVSSFKQIWMGCCSVQICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATV 569
            T L IG+ Q+WWEK L+PNM+ V S QDLV SL +AGDKLVVVDFFSP CGGCKALHPK                                                  IC++AE NP+V+FLQVNYEEH+S+C SLN+HVLPFFRFYRG+ GR+CSFSCTNAT+
Sbjct:   76 TSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPK--------------------------------------------------ICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATI 190          
BLAST of DY263160 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.103e-29
Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 3
Query:   75 TGLRIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKV*WTQDLC*FIFV*TRV*FMLIYFCLDACLIRVFHVSSFKQIWMGCCSV--QICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATVS 572
            + + + +  RWWEK    NM E+ SA  LV+SL +AGD+LVV+DF+SPGCG                                                    GC S+  +ICQLAE NP+V FL+VN EE ++MC+ LNVHVLPFF+FYRGA G++CSFSCT AT++
Sbjct:   68 SSIGMSRGMRWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCG----------------------------------------------------GCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATIN 183          
BLAST of DY263160 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.029e-15
Identity = 48/157 (30.57%), Postives = 73/157 (46.50%), Query Frame = 3
Query:  102 RWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKV*WTQDLC*FIFV*TRV*FMLIYFCLDACLIRVFHVSSFKQIWMGCCSV---QICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNA 563
            +WWE+   PNM ++ SA+  + +L  AGD+LV                                                     +  F   W G C     ++C+ A+ +P++ FL+VN++E+KS+C SLNV VLP+F FYRGA G++ SFSC+ A
Sbjct:   85 KWWERKAGPNMIDITSAEQFLNALKDAGDRLV-----------------------------------------------------IVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLA 188          
BLAST of DY263160 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.618e-13
Identity = 49/159 (30.82%), Postives = 71/159 (44.65%), Query Frame = 3
Query:  102 RWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKV*WTQDLC*FIFV*TRV*FMLIYFCLDACLIRVFHVSSFKQIWMGCCSV---QICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATV 569
            +WWE+   PNM ++ S ++ + +L  AG++LV                                                     +  F   W   C     ++C+ A  +PD+ FL+VN++E+K MC SLNV VLPFF FYRGA G+L SFSC+ A V
Sbjct:   96 KWWERNA-PNMVDIHSTEEFLSALSGAGERLV-----------------------------------------------------IVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKV 200          
The following BLAST results are available for this feature:
BLAST of DY263160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRXL1_ARATH3.450e-4859.39Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH4.826e-4252.73Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH2.103e-2941.67Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH5.029e-1530.57Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL6_ARATH1.618e-1330.82Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10DH07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263160 ID=DY263160; Name=DY263160; organism=Citrus clementina; type=EST; length=1323bp
TTATGTTTTGTTTTGATTTTAAATAGTCGAGGTGAATTAATACCTATATT
TTTCTTCTTTGATGGGGACAATAGACTGGCCTTAGAATTGGGAAGGCACA
AAGGTGGTGGGAAAAGGGGCTGCAACCAAACATGAGAGAGGTGGCTTCTG
CACAAGATTTGGTGGAATCCCTTTGGCATGCTGGGGATAAACTTGTTGTT
GTTGATTTCTTCTCCCCTGGCTGTGGTGGATGCAAAGCTCTCCATCCCAA
GGTATAATGGACACAGGATTTATGCTAATTTATTTTTGTCTAGACGCGTG
TTTGATTTATGCTAATTTATTTTTGTTTAGACGCGTGTTTGATAAGGGTA
TTTCATGTTTCTAGTTTTAAGCAAATTTGGATGGGTTGTTGCTCTGTGCA
GATATGTCAATTGGCAGAGATGAACCCAGATGTGCAGTTTCTTCAGGTTA
ATTATGAGGAGCACAAATCCATGTGTTATAGCCTTAATGTTCACGTCCTG
CCTTTTTTCCGGTTTTACAGAGGGGCTCATGGCCGATTATGCAGCTTTAG
TTGTACTAATGCAACGGTTAGTACAGATTCTGTCGATTCTTAAATGATGA
TTTAGTATGAATATTGATCTTGGTTTCCTATGCACTTGGGGAACATGGGA
TGTGAAACCAATTAAGGGCCCTTTCGTTGTTAATTGAAAAAATATGTTAT
CACTTGGAGTTGTTGAATTCTGCTCTCTTCTTTGGTATCTAAGATGTCTA
GTTGTTGGAGCTGGTCAGTGCTGACTCGAGTAGAATTACACTATTTCACT
TTTATTAGTTTGATGCTACTATTTTCAGGGCTACTTTTAATTAGTTGCTC
TGATGTTTACGTTTACAGATCAAGAAATTTAAAGATGCACTGGCTTAGCA
TACACCAGATCGATGCGGCCTTGGGCCACAAAGGGACTGGAGGAAAAAGA
ACTCCTCGCATTGGCTGCTAACAAGAATCTTTTCTTCAACTACACACCAA
AACCACAACCCATGCCCGCCTCCTGCAATTAAAAAAAGTAGGAATGGCAA
AAATACCTTCACCCTCACCCAATCCCAAATCTTACCTTAACCCTCTCCCT
CCAACCTTTAAGTCCCCTCAAAAAAATGAAAAAAAAAAACTTGGGTGTCA
CCTGGGGGAAAAAAAGAGGGTTAAGTTTTTTCCCAACCCCACCCCCCCCC
GCCCAAAAGGGCCGTTTGGACAAATCTTCCCCACCCCCCGGCGCGTTTAT
AATAAAATTTATTCTGGGGTGGGTGGATAAAAAATTTATTAAAAAACAAC
CCAATCTAAGGAGATCCCTCTTT
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