DY263224

Overview
NameDY263224
Unique NameDY263224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2419 contig Ccv1_Contig2419:1..1303. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.525e-24
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +A +YTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ  EVVAVG G    KN +DI+V  G Q+IYSKYAG    FN  KH  LKE
Sbjct:   55 VAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKE 145          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.478e-19
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  794 QYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +YTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ+ EVVA+G G+      L ++VK G +V+YSKY G     +G  H  +KE
Sbjct:   60 KYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKE 147          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ  EVVAVG   R +D  ++ LD  VK G +V+YSKYAG     +G  +  L E
Sbjct:    4 ISINVSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELD--VKVGDKVLYSKYAGTDVKLSGEDYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.431e-14
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*L-DISVKPGTQVIYSKYAG 1012
            +A+  +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ  EVVAVG G+ + +  L  + +K G +V+YSKYAG
Sbjct:    4 VALNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.431e-14
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ  EVVAVG G+      + + VK G +VIYSKYAG    ++G ++  LKE
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.431e-14
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ  EVVAVG G+      + + VK G +VIYSKYAG    ++G ++  LKE
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.869e-14
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EVVAVG   R +D  ++   I VK G +V+YSKYAG      G  +  L E
Sbjct:    4 ISINVSTVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRS--PIEVKVGDKVLYSKYAGTDIKLGGEDYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.441e-14
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  T++KPLGDRV VK+   EEKT GGIFLP  A+ KPQ  EVVAVG   R +D  +  +++ V  G +V+YSKYAG      G +   L E
Sbjct:    4 VSINVTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGV--GDKVLYSKYAGTDIKLGGEEFVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.188e-14
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ  EVVAVG GE      +++ VK G +VI+SKYAG     +G ++  L+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.164e-14
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP +A+ KPQ  EVVAVG G   +D  ++ +D  VK G +V+YSKYAG     +G  +  L E
Sbjct:    4 ISINVSTLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVD--VKVGDKVLYSKYAGTDIKLSGDDYVLLSE 95          
The following BLAST results are available for this feature:
BLAST of DY263224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CH10C_ARATH1.525e-2467.0320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL1.478e-1954.5520 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_CYAA58.390e-1547.8710 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]
CH10_SYNJB1.431e-1455.8410 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_DESHY1.431e-1450.5910 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESHD1.431e-1450.5910 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_CYAP71.869e-1447.8710 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_MICAN2.441e-1446.8110 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_THEBR3.188e-1450.0010 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_SYNP24.164e-1446.8110 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263224 ID=DY263224; Name=DY263224; organism=Citrus clementina; type=EST; length=1301bp
CAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTAT
CATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGGTACAGT
TTCTTTTCCATGGGTTATTTTATTTTTAAATGACTGAAAAGTCAACTCTG
AGACTGTGCAGTGTGTTGAATTGAAACGAACAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGGTAATTTTATCCTTTAATAAAAGCAGCATTGATAATTCTAAAA
TTTACTTATTTTTTCGAATGTCTGGCCTCATGTTTTTAGTGCTTGATGAA
ATATGAATTGATGCATTATCGATTTTTCATGAATTTTTGGGAGATGATTT
TTTAATGCATTTTGATTTGTTTTTAACTGAAGGCACTTCCATGACTAATT
TGGCTCTAAAACCCACTGACAAATTGAGTCATTGATAAATTGGTTTGTAT
TTCACTTTAAATGAGTCTTGCATTTGTTTCTTTAGTCTGATAGTGTGCAT
TATATTTTTGTTCTCACTGTGCGTGTTATATTTTCAATTCCGTGTGAATG
TTGCACATCTATCTCTTCTGTTAATGTTAGTAAATGATCAGATTATTTGA
GCTTGTTTGCTTGTCATTCAATTATTTTGATTTTATGGCTGTGCAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAAAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAGGCAAGTGAGGTGGTAGCTGTTGGGCGAGGGGAAGACAGTTGGA
AGAACTAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCC
AAGTATGCAGGGAACTGATTTGGATTCAATGGCCCAAAACATCCTAAATT
GAAGGAAGGATAACTAAATTGGCTTTCTTGAAAAAAAATAAAATCAAGGA
TTTTAACCCCTTTATGAAAAAAATTTCCTCAAGGTTGGTGAAAGCTGAAA
AAAAAAAGGGGCGGGGAGGTTTGTTTTGTGGACGGAGGAGAAGAAAGGGA
AAAAAACCTTTTCTTTTGGGAAAAGGGGTCTTTTGGTGTGTGGTGAAAGC
CCGGGGCCCCCTCTTCAAAAGATAAGAAAAGAAAGGGATAAAAAAAAAGA
A
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