DY263228

Overview
NameDY263228
Unique NameDY263228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1041
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11864 contig Ccv1_Contig11864:44..1084. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH035_ARATH (Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.637e-66
Identity = 137/239 (57.32%), Postives = 174/239 (72.80%), Query Frame = 3
Query:   96 QEYQNYWETKMFLQNEEFD---TWPLDEAFSGYYDXXXXXXXXXXXXXKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESG-KSKKNFGFDFEQELPVLLRPKK-KKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEEEMDDLKIKIQTAIQALNDPSSP 797
            QE  NYWE   FLQNE+F+   +WPL+EA SG YD             KNIVSERNRR+KLN+RLFALRSVVPNI+KMDKASIIKDAI YI+ L  +EK++  EI ELES  KS  +F  DF+++L V +  KK K++D     +GS T+ +E+LEL+V  MGE+ +VVSVTC+KRTDTMVKLCE FESL LKI+T+N+T+ +G +  T FIEADEEE + L++KI+T I A N+  SP
Sbjct:    7 QELSNYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLD-----SGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEADEEEQEVLRLKIETGIGAYNETQSP 240          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH027_ARATH (Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.996e-49
Identity = 108/224 (48.21%), Postives = 143/224 (63.84%), Query Frame = 3
Query:   84 EDYQQEYQNYWETKMFLQNEE--FDTWPLDEAFSGYYDXXXXXXXXXXXXX-KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKS---------KKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIE 719
            ED   EY+NYWET MF QN+E  FD+WP++EAFSG  +              KN+VSERNRR+KLN+RLFALRSVVPNISK+DKAS+IKD+IDY+QEL +QEK +  EI ELES  +           NF     Q+       + KK  +   S   +  P+E+LE++V  MGEK +VV +TCSK+ +TMV+LC+  ESL L I+T N ++   RL  T F++
Sbjct:    2 EDLDHEYKNYWETTMFFQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQ 225          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: AMS_ARATH (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.561e-18
Identity = 57/180 (31.67%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEI---MELESGKSKKNFGFDFEQELPVLLRP--------KKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEEEM 737
            KN+++ER RRKKLN+RL+ALRS+VP I+K+D+ASI+ DAI+Y++EL  + K ++DE+    E E G ++   G      +     P           K D   +++  +   +E  ++ V  +  +   V V C  +     +L EA +SL L++  AN T     +     +E ++ EM
Sbjct:  314 KNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETEDGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEME-PQVDVAQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEKNDNEM 492          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.510e-16
Identity = 60/185 (32.43%), Postives = 102/185 (55.14%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELH---EQEKRIRDEIMELESGKSKK-NFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEE--EMDDLKIKIQTAI 770
            ++ +ER RR+KLN+R ++LR+VVPN+SKMDKAS++ DAI YI EL    +Q +  ++EI +   G SK+ N G           R K++K      S    TA    +E+ VK +G  ++ + V C K+     +  EA + L L++  A+++ V   +++ A ++   +    D LK+ + T +
Sbjct:  416 HVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEIQKKLDGMSKEGNNGKGCGS------RAKERK-----SSNQDSTASSIEMEIDVKIIGWDVM-IRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGSQFFNHDQLKVALMTKV 588          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.614e-15
Identity = 53/166 (31.93%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEI-LELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADE 728
            ++ +ER RR+KLN+R +ALRSVVPNISKMDKAS++ DA+ YI ELH + K     +ME E    ++  G+                         S   P+ +  ++ V+T GE +  V + C   +    ++  AFE  K+++I +N+      +L T  ++++E
Sbjct:  434 HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLK-----VMEAE----RERLGY-------------------------SSNPPISLDSDINVQTSGEDV-TVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVKSEE 564          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: SCRM2_ARATH (Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.794e-14
Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEEEMDDLKIKIQTAI 770
            KN+++ER RRKKLN+RL+ LRSVVP ISKMD+ASI+ DAIDY++EL +   RI D   ELES     +         P       +  +    S+   +   +   + V+    K + + + C +R   ++    A ++L L +  A I+   G  L     E  +E+ D L  +I+  +
Sbjct:  267 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQ---RINDLHTELESTPPSSS---SLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQIKAVL 440          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH090_ARATH (Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.996e-14
Identity = 44/167 (26.35%), Postives = 92/167 (55.09%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEE 731
            KN+ SER RR+++N+ ++ LR+VVP I+K++K  I  DA+DYI EL  +++++ DE+  +   + K+       +E   +  P+ +++     S  ++      +++ V   GE+  ++ V    + D   +L EA +  +L+II  N T +   ++    ++A+++
Sbjct:  264 KNLHSERKRRERINQAMYGLRAVVPKITKLNKIGIFSDAVDYINELLVEKQKLEDELKGINEMECKEIAA----EEQSAIADPEAERV----SSKSNKRVKKNEVKIEVHETGERDFLIRVVQEHKQDGFKRLIEAVDLCELEIIDVNFTRLDLTVMTVLNVKANKD 422          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.996e-14
Identity = 56/188 (29.79%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQEL---------HEQEKRIRDEIMELESGKSKKNFGFD--FEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEE--EMDDLKIKI 758
            ++ +ER RR+KLN+R ++LR+VVPN+SKMDKAS++ DAI YI EL          ++E + + ++M  E+G +K +        QE  VL+                       +E+ VK +G   + + + CSKR     K  EA + L L++  A+++ V   +++ A ++   +    D LK+ +
Sbjct:  417 HVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKEAGNAKSSVKDRKCLNQESSVLIE----------------------MEVDVKIIGWDAM-IRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVAL 581          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: FIT_ARATH (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.816e-14
Identity = 47/140 (33.57%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESL 650
            + ++SER RR ++ ++L+ALRS+VPNI+KMDKASI+ DA+ Y+QEL  Q K+++ +I  LE+  +       +++  P     +K +  R  +   S+    +I+++ V  + EK   V + C+K       L ++ ESL
Sbjct:  131 RTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTG---GYQEHAP---DAQKTQPFRGINPPASK----KIIQMDVIQVEEKGFYVRLVCNKGEGVAPSLYKSLESL 260          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: ICE1_ARATH (Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.901e-14
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGK---SKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEEEMDDLKIKIQTAI 770
            KN+++ER RRKKLN+RL+ LRSVVP ISKMD+ASI+ DAIDY++EL ++   + +E+     G    +  +F         +  R K++       S   + A VE     V+    + + + + C +R   ++   +A ++L L +  A I+   G  L     E  +E  + L  +I+  +
Sbjct:  307 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVE-----VRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQIKAVL 484          
The following BLAST results are available for this feature:
BLAST of DY263228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
BH035_ARATH2.637e-6657.32Transcription factor bHLH35 OS=Arabidopsis thalian... [more]
BH027_ARATH4.996e-4948.21Transcription factor bHLH27 OS=Arabidopsis thalian... [more]
AMS_ARATH4.561e-1831.67Transcription factor ABORTED MICROSPORES OS=Arabid... [more]
ATR2_ARATH9.510e-1632.43Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH013_ARATH3.614e-1531.93Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
SCRM2_ARATH1.794e-1432.22Transcription factor SCREAM2 OS=Arabidopsis thalia... [more]
BH090_ARATH3.996e-1426.35Transcription factor bHLH90 OS=Arabidopsis thalian... [more]
BH004_ARATH3.996e-1429.79Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
FIT_ARATH6.816e-1433.57Transcription factor FER-LIKE IRON DEFICIENCY-INDU... [more]
ICE1_ARATH8.901e-1430.60Transcription factor ICE1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263228 ID=DY263228; Name=DY263228; organism=Citrus clementina; type=EST; length=1041bp
CTCAATCTACTTTTATTTGATTTCTTCTCAAGAAAGAAGAATCCTTCTAT
TTTTTTTGTTTTGGTGTGATGGAAAACCTCGGCGAAGACTACCAGCAAGA
GTATCAAAATTACTGGGAAACCAAAATGTTCCTCCAAAATGAAGAATTTG
ACACATGGCCATTGGACGAGGCGTTTTCGGGGTACTATGACTCGAGTTCT
CCGGACGGGGCGGCGTCGTCGGCGGCGTCCAAGAATATTGTCTCGGAGAG
GAATAGGAGAAAGAAGCTCAACGAAAGGCTGTTTGCTCTTAGATCAGTTG
TCCCCAATATTAGCAAGATGGATAAAGCATCAATAATCAAAGATGCTATC
GATTACATACAAGAGCTGCACGAGCAAGAGAAGAGGATTCGAGATGAAAT
AATGGAACTCGAGTCTGGGAAATCGAAGAAGAATTTTGGGTTTGATTTCG
AGCAGGAGCTGCCTGTTTTGTTGAGACCAAAGAAGAAGAAAATTGACCGG
TTCTTTGATTCGGCAGGATCAAGAACTGCTCCTGTTGAAATCCTTGAACT
TCGGGTAAAAACAATGGGAGAAAAGATATTGGTGGTGAGCGTAACTTGTA
GCAAAAGAACAGATACAATGGTTAAATTGTGTGAGGCCTTTGAATCTTTA
AAGCTAAAAATCATCACCGCAAATATCACCGCTGTTGCTGGCAGGCTTTT
GAAGACAGCCTTTATTGAGGCTGATGAAGAGGAGATGGACGATTTGAAGA
TTAAAATTCAAACAGCAATTCAAGCTCTCAATGATCCATCAAGTCCCATG
AGCGTCTAATGTCACAAGCTCCAACAACTTCAAATCGGTGATGGTGTGAG
TTTTTGGATGGCATGTTTTGATATGCTTTTATCACCACTCACTCACCATA
GCCTGCTTATTTTTCTCATTTTTATGCTTAATGAAGATACGACGTTTCTG
GCCCCCCCCCCCCCCCCCCCCCCCTTGGCTTTCCTGGTCCAAAAGGTTAA
TTCTTCATAAACAAAAATGGAAAGGGCTCAGTAATTCTACT
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