DY263230

Overview
NameDY263230
Unique NameDY263230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1231
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263230_ssr249 microsatellite DY263230_ssr249:249..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: Y5458_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.602e-18
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  172 LFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAA 690
            +F+++  QS     SL  EG            DP+G L +W   D ++  CSWFGV C D KV  LNL    L GTLAPE+  L+ ++S+IL  N  SG IP                NN +G +P +L    +   LLL  N F G ++ +  +LQ L + Q+++  +LSS +
Sbjct:   16 MFLIITLQSRSSL-SLESEGFVLLKFRARVDSDPHGTLANWNVSDHDHF-CSWFGVTCVDNKVQMLNLSGCSLGGTLAPELSQLSELRSLILSKNKLSGDIPNEFASFAKLEFLDLRDNNLNGVVPPELNKVLTPENLLLSGNKFAGFMTVKFLRLQSLYKVQMNKNRELSSVS 187          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: MRH1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.291e-17
Identity = 56/156 (35.90%), Postives = 74/156 (47.44%), Query Frame = 1
Query:  175 FVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ 642
            F ++I     L  SL  +G            DP+G L +W      N+ C W GV C DGKV  L+L    LEGTLAPE+  L+ ++S+IL  N FSG IP                N+ SG +P +L    SL  LLL  N F   +  +I +LQ
Sbjct:   12 FFLIIGLQAPLSLSLTSQGSALLKFRARVNSDPHGTLANWNVSGI-NDLCYWSGVTCVDGKVQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDLSGQIPPELSNGLSLKHLLLSGNKFSDDMRIKIVRLQ 166          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.336e-14
Identity = 41/142 (28.87%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  268 DPYGALTSWRSCDTENNPCSWFGVECSDGK--VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 687
            DP   +++W   D  ++PC W G+ CS  K  V+ +N+    ++G LAPE+  +T+++ +IL  N   G IP               +N+  GP+P ++G    + I+ L +N   G L  E+  L+ L E  +D  +L  +
Sbjct:   41 DPLLVMSNWN--DPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAELGNLKYLRELHIDRNRLQGS 180          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 53/146 (36.30%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  268 DPYGALTSWRSCDTENNPCSWFGVECS--DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLSESQVD-EGQLSS 684
            DP+  L SW   + +N PCSW  V+C+    +V+ L+L  L L G +   IQ L  +K + L NN+F+G I                HNN SG +P+ LG   SL  L L  N F G+LS +++     L+ LS S    EGQ+ S
Sbjct:   49 DPFSHLESW--TEDDNTPCSWSYVKCNPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSLSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPS 191          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 45/148 (30.41%), Postives = 65/148 (43.92%), Query Frame = 1
Query:  172 LFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECSDGKVVN-LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVG 612
            L  +  + S+   ++LN +G             P     SW + D+   PCSW GVEC   + V+ LNL    + G   PEI  L H+K ++L  N F G IP                N+F+G +P+ LG   +L  L L  N  +G
Sbjct:    9 LLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDS--TPCSWLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIG 154          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.786e-12
Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 1
Query:  268 DPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSW 708
            DP   L SW    T  NPC+WF V C+ +  V+ ++L +  L G L PE+  L +++ + L +N+ +G IP                N+FSGP+P  LG    L  L L+NN   GS+   +  +  L    +   +LS +     S+
Sbjct:   42 DPNNVLQSWDP--TLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSF 187          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.786e-12
Identity = 48/177 (27.12%), Postives = 74/177 (41.81%), Query Frame = 1
Query:  154 FTRLGVLFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECSDGK-VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 681
            F  L + F + +S  +     LN +G             P    ++W+   +E  PC+WFG+ C D K V +LN     + G L PEI  L  ++ + L  N+FSG IP                N FS  +P+ L     L +L L  N   G L   ++++  L    +D   L+
Sbjct:    8 FKILLLFFCLFLSTHIISVSCLNSDGLTLLSLLKHLDRVPPQVTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRIPKLQVLYLDYNNLT 184          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.753e-12
Identity = 45/157 (28.66%), Postives = 73/157 (46.50%), Query Frame = 1
Query:  214 SLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 681
            +LN +G            DP   L +W       +PCSW G+ C+ D KV+ L+L +  L G++  ++ SL  ++S+ L NNSF+G +P                N  SG +P+ +G  H+L  L L +N   G L   +  L+ L+   ++    S
Sbjct:   21 ALNSDGLVLMKFKSSVLVDPLSLLQTWNY--KHESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFS 175          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.059e-11
Identity = 56/181 (30.94%), Postives = 80/181 (44.20%), Query Frame = 1
Query:  151 KFTRLGVLFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCS--WFGVECS-DGKVVN-LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 681
            + T L  LFV     S+    SLN +G             P    ++W+   +E  PC+  WFGV C   G VV  LNL    L G L  EI  L  + ++ L  NSFSG++P               +N+FSG +P+  G   +LT L LD N+  G +   +  L  L + ++    LS
Sbjct:    8 EITLLCSLFVYFRIDSVS---SLNSDGLALLSLLKHFDKVPLEVASTWKENTSETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLS 185          
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.383e-11
Identity = 41/148 (27.70%), Postives = 70/148 (47.30%), Query Frame = 1
Query:  268 DPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSW 708
            DP   L SW    T  NPC+WF V C+ +  V+ ++L +  L G L P++  L +++ + L +N+ +G +P                N+F+GP+P+ LG    L  L L+NN   G +   +  +  L    +   +LS +     S+
Sbjct:   45 DPNNVLQSWDP--TLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSF 190          
The following BLAST results are available for this feature:
BLAST of DY263230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
Y5458_ARATH2.602e-1834.48Probable LRR receptor-like serine/threonine-protei... [more]
MRH1_ARATH1.291e-1735.90Probable LRR receptor-like serine/threonine-protei... [more]
Y1634_ARATH1.336e-1428.87Probable LRR receptor-like serine/threonine-protei... [more]
Y3804_ARATH1.634e-1236.30Probably inactive leucine-rich repeat receptor-lik... [more]
RPK1_IPONI1.634e-1230.41Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
SERK1_ARATH2.786e-1230.41Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
PEPR1_ARATH2.786e-1227.12Leucine-rich repeat receptor-like protein kinase P... [more]
Y4372_ARATH4.753e-1228.66Probable LRR receptor-like serine/threonine-protei... [more]
PEPR2_ARATH1.059e-1130.94Leucine-rich repeat receptor-like protein kinase P... [more]
SERK2_ARATH1.383e-1127.70Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263230 ID=DY263230; Name=DY263230; organism=Citrus clementina; type=EST; length=1231bp
CGAAGATGACTTGAAAACTCAGATATTTCACATTTGTGTTCTCCGTTTCA
ATCTAAATCCTTAATTTTTAAAACTTCAGTTAATTTAAAACTTTAAGTTC
TCCGATCCGACATCGTTTCTCAACTCCGGTGGAAAATGGACCAGAACTGG
AAGTTCACCAGATTAGGAGTTCTGTTCGTAGTTCTAATTTCTCAAAGTTT
GTGCTTGTGTTGGTCTTTAAACGACGAAGGTTTGGCTCTGTTGAGATTGA
GAGAGAGAGTGGTGCGTGATCCATATGGTGCTTTAACGAGTTGGAGAAGT
TGTGATACAGAGAATAATCCGTGTTCTTGGTTCGGCGTTGAGTGCTCTGA
TGGCAAAGTTGTAAATTTGAACTTGAAGGATCTATGCCTTGAAGGAACTC
TGGCTCCGGAGATCCAAAGCCTAACTCACATAAAGTCTATTATTTTACGC
AACAACTCTTTTAGTGGAATCATTCCTGAAGGATTTGGAGAGTTGGAGGA
GTTAGAGGTGTTGGATTTCGGACACAATAACTTTAGTGGACCTCTCCCAA
ATGACCTGGGCATTAATCATTCACTGACAATTCTTTTATTGGACAACAAT
GACTTTGTTGGAAGCCTATCTCCCGAGATATATAAACTTCAGGTGCTTTC
TGAATCCCAAGTGGATGAAGGCCAGCTATCTAGTGCTGCTAAAAAGGAAC
AGTCTTGGTACGAAAGATCGATTAAATGGAATGGTGTCCTTGATGAAGAT
ACTGTTCAAAGGAGACTGCTGCAAATTCATCCTTTCAGAAATCTCAAAGA
CCGTAATTTTGGAAATGCGCGTACCTCTTCTCCACTTCCTTCATCAGATG
CTATTCCACCTACTGCTGTTGCTTCCTCAAACGACACAAAGGGAAATGCA
ACAAGCTCTGATCGTAATGATTCCGTTTCATCTCAAAAACTTTCCATCCA
GCTCCAGCTCCAGCTCCAATCAACTCCAACTCCAACTCCTTCCCCTTTCA
ATTCCAAGGCTTTCCTCTTACAAACCTTCAAAAAACAAGGGGGAATTCTT
CAAAACTATTGGCATTCTGGGCGGAATTCAAAGGGGGCCCCAAACTGGTG
GGAACAATTGTGGGGTAAATTCTCCGGCAAAAACAAAAAGGAATCAATGG
TCAAAACCTGGGGGCCAAGGAATGGAGGGGAAAGCCTTCAAAAAACCTTT
GTAATGGGGGTTTTCAAAACCTTAAAAAAAA
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