DY263235

Overview
NameDY263235
Unique NameDY263235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1325
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.042e-44
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNG  CGACFELKC  DP+WC+ G+P+I ITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLK+A+YRAGIVPVS+RR
Sbjct:   65 NTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.361e-44
Identity = 79/91 (86.81%), Postives = 85/91 (93.41%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNG+ CGACFELKC  DPQWC+ G+P+ILITATNFCPPN AQPSDNGGWCNPPR HFDLAMP+FLK+AQYRAGIVPVSYRR
Sbjct:   65 NTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.505e-43
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNG  CGACFE+KC  DP+WC PGNP+IL+TATNFCPPNFAQPSD+GGWCNPPR HFDLAMPMFLK+  YRAGIVPVSYRR
Sbjct:   70 NTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.664e-42
Identity = 72/91 (79.12%), Postives = 84/91 (92.31%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALST+LFN+G  CGACFE+KC  DP+WC+PGNP++ +TATNFCPPN AQPSDNGGWCNPPR HFDLAMP+FLK+A+YRAGIVP+SYRR
Sbjct:   68 NTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRR 158          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.173e-42
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNGL CG+CFELKC  DP WC PGNP+ILITATNFCPPNF Q SDNGGWCNPPR HFDLAMPMFL +A+Y+AGIVPVSYRR
Sbjct:   66 NTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.192e-40
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDP--QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            N AALSTALFN+G  CGACFE+KC   P  +WC+PG+P+ILITATNFCPPN+A PSDNGGWCNPPRPHFDLAMPMFL +A+YRAGIVPVSYRR
Sbjct:   70 NNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRR 162          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.845e-34
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN+G  CGACFEL+C  DP+WC PG+  I+++ATNFCPPNFA  +DNGGWCNPP  HFDLA P FL++AQYRAGIVPV++RR
Sbjct:   67 TAALSTALFNSGQKCGACFELQCEDDPEWCIPGS--IIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRR 154          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.845e-34
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNGL CGACFE++C  D +WC PG+  I++TATNFCPPN A P++ GGWCNPP+ HFDL+ P+F ++AQYRAGIVPV+YRR
Sbjct:   61 NTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGS--IVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRR 149          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.845e-34
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNGL CGACFE+KC  D  WC PG  AI++TATNFCPPN A P++ GGWCNPP  HFDL+ P+F ++AQY+AG+VPVSYRR
Sbjct:   64 NTAALSTALFNNGLSCGACFEIKCQSDGAWCLPG--AIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRR 152          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 3.715e-34
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALST LFN+G  CG+C+EL+C  D QWC PG+  + +TATN CPPN+A P+D+GGWCNPPRPHFD+A P FL++  YRAGIVPVSYRR
Sbjct:   63 NTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGS--VTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRR 151          
The following BLAST results are available for this feature:
BLAST of DY263235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA6_ARATH1.042e-4485.71Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA4_ARATH1.361e-4486.81Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA3_ARATH1.505e-4384.62Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP16_ARATH1.664e-4279.12Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH2.173e-4284.62Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA7_ORYSJ1.192e-4079.57Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ARATH2.845e-3472.22Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA1_ARATH2.845e-3470.33Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH2.845e-3471.43Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA2_ORYSJ3.715e-3468.13Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263235 ID=DY263235; Name=DY263235; organism=Citrus clementina; type=EST; length=1325bp
TGAATACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGCTTGATCTGC
GGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATGGTGTAACCC
GGGTAACCCGGCCATTCTGATCACGGCGACAAACTTTTGCCCCCCGAACT
TCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCTCGCCCTCAT
TTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTACCGCGCTGG
TATCGTCCCCGTTTCTTACCGCAGGTGAGTGTTGGAGTTACTGTCGATTT
TACTCAAATGCCCCTGCTAAAGTTTACATTTTTATTTAATATGTGTTTTC
TTTTCTTTGTCTCCAAGTTTTGTTTGAATGTCTTCTTTGGAAGAAATACC
GGAAACCCGGGAAAAAGTCGGGCTGTTTAATGTGTGTTTTTATTTTAATA
TTTTCCCTTTTCTTTTCTTCGCAAACAAACAGAACCCGGAAATAAGTTTA
CTGATCAGTAGTTTATGTCGTTTATCCCAACATAGCCAACGGCAAACCGT
TCAGCCCTTGTGCCTTTTTCACCCTTGTACTTTTCGGTGTTGTTTAAATT
ATAATTATTTTTATAACTAAAATATGCTCGCATGTATGTAATTGTTTAAT
TTGTACGAGGACATTGTCGTCAAATAAAATAAGGGTGCTTTAGTAATTTT
ACGTTTCTCAAATATTACCGGAAAATCAGGATTGGGTGGTGGTTCTAAGT
CAGAAAATCTGGGGCACAGTTCACGTTCTCCCACGCGTGTGTCTGTTCAC
AATTTTTTTGGGACCTTGTACCTAATTACTGAAATATTTATTTTTTAATT
TTTTTAACCAGTCAAGGTTTTAGTCTTCAAACGGGGGCCTAAAGTTGCCC
TCAAACCGTAGGGGACTGTTAGGGCAGGTCTTAACTGCGACGTTACCCAT
TTTTTAAATAATTATATTATTTTGTCTTTGCAGGGTGCCCTGCAAAAAGC
AAGGCGAATTCAAATCACATTAAACGGTTTCCGTTCTTTCACTTGGTCCT
GGGTCCCCAACGCCCCGGGGGGCGGGGGAAATTCCGGGCCCTGGACCTTG
AAAGGGGGCCAACCCCAAATGGGCTGAACATGGACCCCCACTGGGGGAAA
AAACGGGGCAACCACACCCCCTCCCTCCGGGGGCCCGGAGCCTTTTTTTT
TTAAAAATCCCGGGGGGAGGGGGCAAAGAAGGAGCCCCTACCCCCCTTTG
GTGAAAGATGGGGCCCCCCGCGGCAAAAATTGGGAGGCGTTTGGGGGGTT
AACACCCCCTTTTTCTGTGTGGGAA
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