DY263240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 382.489 bits (981), Expect = 2.060e-105 Identity = 198/295 (67.12%), Postives = 228/295 (77.29%), Query Frame = 3 Query: 114 PRKFPVRCSSLPV--SAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPNLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHSTGVEKA-MEVAEELRSKAKEELDRVKN 989 P P++ S + S++S S FDL+TYWTTLITEI+Q L++AI VK+P IYE+MRYSVLA+G KRAPPVMCVAACELFG +R+AAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTVYG +AILAGDALFPL FQHIVSHTPP LVP +LR+I EIAR VGSTGMAAGQ++DLEG P + FVQEKKFG M ECSAVCGG L GA +DE+QSLRRYGRAVG+LYQVVDDI E K ++ + G EK ME+AEEL+ KAK+EL N Sbjct: 20 PHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKS---------------YDGGAEKGMMEMAEELKEKAKKELQVFDN 299
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 228.409 bits (581), Expect = 4.973e-59 Identity = 124/297 (41.75%), Postives = 182/297 (61.28%), Query Frame = 3 Query: 138 SSLPVSAASQLRSTQ---FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHS-------TGVEKAMEVAEELRSKAKEEL 974 SS V+ LR ++ FD +Y T +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+H+ S T +V RV+R + E+A+A+G+ G+ AGQ +D+ E +EF+ K + E SAV G + G DDEI+ LR++ R +G+L+QVVDDIL+ T +E K G+ + G+EK+ E AE+L +A+++L Sbjct: 56 SSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDV---TKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQL 348
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.447e-58 Identity = 130/319 (40.75%), Postives = 186/319 (58.31%), Query Frame = 3 Query: 99 PCVCLPRKFPVRCSSLPVSAASQLRSTQ--------------FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHS-------TGVEKAMEVAEELRSKAKEEL 974 P L F R S P+S+ S + + + FD K+Y I+Q LE AI ++ P +I+ESMRYS+LA G KR P +C+AACEL G N A P ACA+EM+H SLIHDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI T V R++R + E+A+A+G+ G+ AGQ +D+ E + +EF+ K ++ E + V G L G D+E++ LR+Y R +G+L+QVVDDIL+ T +E K G+ + G+EK+ E AE+L +A+E+L Sbjct: 35 PLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGG-KRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLN--VSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDV---TKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQL 347
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 2.468e-58 Identity = 121/280 (43.21%), Postives = 179/280 (63.93%), Query Frame = 3 Query: 174 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDL--EGEPNL----VEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHS-------TGVEKAMEVAEELRSKAKEEL 974 S+ FD K Y +++ LE A+ V+ P +I+ESMRYS+LA G KR P++C+AACELFG A P+ACA+EM+H SL+HDDLPCMD+D RRG+P+NH V+G D+A+LAGDAL F+HI + T V R++RV+ E+A+ +GS G+ AGQ +D+ EG ++ +EF+ K + E S V G + GA+D++I LR++ R +G+L+QVVDDIL+ T +E K G+ + G++K+ E AE+L +A+E+L Sbjct: 61 SSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGG-KRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKG--VSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDV---TKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQL 334
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 7.181e-58 Identity = 118/282 (41.84%), Postives = 176/282 (62.41%), Query Frame = 3 Query: 174 STQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHS-------TGVEKAMEVAEELRSKAKEEL 974 S+ FD +Y +++ L+ A+ ++ P +I+E+MRYS+LA G KR PV+C+AACEL G A P CA+EM+H SLIHDDLPCMD+D RRG+P+NH VYG D+A+LAGDAL F+H+ S T + P RV+R + E+A+A+G+ G+ AGQ +D+ E ++F+ K + E SAV GG + G D+EI+ LR++ R +G+L+QVVDDIL+ T +E K G+ + G+EK+ E AE+L ++A+++L Sbjct: 67 SSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGG-KRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSP-ARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDV---TKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQL 343
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 3.017e-56 Identity = 120/278 (43.17%), Postives = 173/278 (62.23%), Query Frame = 3 Query: 183 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEPN------LVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMW-------HSTGVEKAMEVAEELRSKAKEELD 977 F+ K Y T +++ L++AI VK P I+E+MRYS+LA G KR P++C+AACEL G N+ A ACA+EM+H SLIHDDLPCMD+D RRG+P+NH +YG D+A+LAGD+L F+HIV+ T V R++ +AE+A+++G+ G+ AGQ D++ N +EF+ K + E S V G L G + E++ LRR+ R +G+L+QVVDDIL+ T EE K G+ + G+EKA E A EL +AK++L+ Sbjct: 76 FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGG-KRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNSTAG--VTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDV---TKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLE 347
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 6.721e-56 Identity = 119/292 (40.75%), Postives = 179/292 (61.30%), Query Frame = 3 Query: 144 LPVSAASQLRSTQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGE---PNLV-----EFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMW-------HSTGVEKAMEVAEELRSKAKEEL 974 +P ++ FD K Y ++ L+ ++ ++ P + E++RYS+LA G KR P++C+A CEL G + A ACA+EM+H +SLIHDDLPCMD+ RRG+P+NH VYG D+A+LAGDAL L F+H+ + + PE R++R + E+ARA+G+TG+ AGQ +DL E P+ V EF+ K + E +AV G + G ++EI+ LR+Y R +G+L+QVVDDIL+ T EE K G+ + G+E++ EVAE+LR +A+E+L Sbjct: 51 IPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGG-KRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPE-RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKST---EELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQL 337
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 7.198e-50 Identity = 108/279 (38.71%), Postives = 165/279 (59.14%), Query Frame = 3 Query: 183 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEEKRKRRGRAMWHS-------TGVEKAMEVAEELRSKAKEEL 974 F+ Y + +++ LE+AI V P +I+E+MRY++LA G KR P++C+A+CEL G AA P ACA+EM+H SLI DDLPCMD+D RRG+P+ H VYG +AIL+G AL L F+H+ + + R++ + E+AR++G+ G+ AGQ +D+ E +EF+ K + E +AV G + G D+EI+S+R++ R +G+L+QVVDDIL+ +T EE K G+ G+EK+ E + L A++ L Sbjct: 83 FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAG-KRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTTAE----ISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILD---ETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHL 353
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 7.958e-49 Identity = 113/288 (39.24%), Postives = 168/288 (58.33%), Query Frame = 3 Query: 183 FDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP--------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKAQTPRDEE------KRKRRGRAMWHST-GVEKAMEVAEELRSKAKEEL-----DRVK 986 FD K Y + I++ L++AI + P I+++MRY++LA G KR P++C+AACEL G A ACA+EM+H SLI DDLPCMD+D RRG+P+ H V+G +AIL+G AL L F+H+ V +++R + E+A+++G+ G+ AGQ DL E +E++ K G + E SAV G + G + EI+ +R + R +G+L+QVVDDIL+ +T EE K K G+ + GVEK+ E E+L+ A+E L D+VK Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGG-KRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILD---ETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVK 358
BLAST of DY263240 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 1.039e-48 Identity = 109/279 (39.07%), Postives = 165/279 (59.14%), Query Frame = 3 Query: 177 TQFDLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLRVIAEIARAVGSTGMAAGQFLDLEGEP------NLVEFVQEKKFGEMSECSAVCGGFLAGADDDEIQSLRRYGRAVGVLYQVVDDILEAKA-------QTPRDEEKRKRRGRAMWHSTGVEKAMEVAEELRSKAKEEL 974 T F+L TY ++ L K+I P IY+S+RYS L+ G KR P++C+A+CEL G A PTACALEM+H SLIHDDLP MD+D RRG+P+NH +YG D+AILAGDAL F+ I + T VP +++VIA++A +V ++G+ GQ +DL E + F+ K G + E + + G LAGA + ++ RY + +G+ +Q++DD+L+ + +D + +K + W GVE++++ AE L +AKEE+ Sbjct: 6 TNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYS-LSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKN--VPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFW---GVEESIKQAELLVEEAKEEI 278 The following BLAST results are available for this feature:
BLAST of DY263240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >DY263240 ID=DY263240; Name=DY263240; organism=Citrus clementina; type=EST; length=990bpback to top |