DY263333
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_ARATH (Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2) HSP 1 Score: 278.87 bits (712), Expect = 4.826e-74 Identity = 142/169 (84.02%), Postives = 154/169 (91.12%), Query Frame = 3 Query: 3 E*EVQLVEEGMRAASLEENDVERKEMQANEDPEPPMRIVKNWKRPEERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQN 509 E EV+LV EGMRAA+LEEN +++ D E PMRIVKNWKRPE+RIP ERDPTK VISPITGELIPI+EMSEHMRISLIDPK+KEQK+RMFAKIRETTLAQDDEI++NIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHT SIGRTANQA+SQN Sbjct: 358 EEEVKLVAEGMRAANLEEN----VKIENVHDEEAPMRIVKNWKRPEDRIPTERDPTKVVISPITGELIPINEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQALSQN 522
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_MOUSE (Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.515e-16 Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 96 PEPPMRIVKNWKRPE--ERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIR--ETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQNI 512 P P IV+ P+ + +P P ++++SPITGE IP S+M EHMRI L+DP++ EQ++R + + + A +I ++ LA R DIFG E + + E +K +E +V WDGH+ S+ RT QA NI Sbjct: 380 PTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEE---KVTWDGHSGSMART-QQAAQANI 518
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_HUMAN (Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.515e-16 Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 96 PEPPMRIVKNWKRPE--ERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIR--ETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQNI 512 P P IV+ P+ + +P P ++++SPITGE IP S+M EHMRI L+DP++ EQ++R + + + A +I ++ LA R DIFG E + + E +K +E +V WDGH+ S+ RT QA NI Sbjct: 382 PTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEE---KVTWDGHSGSMART-QQAAQANI 520
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_BOVIN (Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.515e-16 Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 96 PEPPMRIVKNWKRPE--ERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIR--ETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQNI 512 P P IV+ P+ + +P P ++++SPITGE IP S+M EHMRI L+DP++ EQ++R + + + A +I ++ LA R DIFG E + + E +K +E +V WDGH+ S+ RT QA NI Sbjct: 382 PTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEE---KVTWDGHSGSMART-QQAAQANI 520
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_DICDI (Probable splicing factor 3 subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 6.205e-13 Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 3 Query: 48 LEENDVERKEMQANEDP--EPPMRIVKNWKRPEERIPAERDPTKFV-ISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRET-----TLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQ---VIWDGHTSSIGR 482 +EE+ + N P + ++IVK++++ + + PTK + + IP+ EM EHMRI LI + ++ + TL QDD+I+RN+ A R DIFG TE KK+DEQP Q VIWDGH+ SI R Sbjct: 371 IEESSLSSTNTTGNLPPKDQSKLKIVKDYQKSNSSVKSNA-PTKLTQLCQFCKQEIPLDEMQEHMRIELIQKQQRDSRLGGGGSSNNNNNLTNTLTQDDDIARNLQSFASKRVDIFGETES----------SKKQDEQPTQAPKVIWDGHSGSIPR 515 The following BLAST results are available for this feature:
BLAST of DY263333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY263333 ID=DY263333; Name=DY263333; organism=Citrus clementina; type=EST; length=1331bpback to top |