DY263333

Overview
NameDY263333
Unique NameDY263333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1331
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263333_ssr574 microsatellite DY263333_ssr574:574..585. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_ARATH (Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 4.826e-74
Identity = 142/169 (84.02%), Postives = 154/169 (91.12%), Query Frame = 3
Query:    3 E*EVQLVEEGMRAASLEENDVERKEMQANEDPEPPMRIVKNWKRPEERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQN 509
            E EV+LV EGMRAA+LEEN     +++   D E PMRIVKNWKRPE+RIP ERDPTK VISPITGELIPI+EMSEHMRISLIDPK+KEQK+RMFAKIRETTLAQDDEI++NIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHT SIGRTANQA+SQN
Sbjct:  358 EEEVKLVAEGMRAANLEEN----VKIENVHDEEAPMRIVKNWKRPEDRIPTERDPTKVVISPITGELIPINEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQALSQN 522          
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_MOUSE (Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.515e-16
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   96 PEPPMRIVKNWKRPE--ERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIR--ETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQNI 512
            P P   IV+    P+  + +P    P ++++SPITGE IP S+M EHMRI L+DP++ EQ++R   + +  +   A   +I  ++  LA  R DIFG  E  +   +  E  +K +E   +V WDGH+ S+ RT  QA   NI
Sbjct:  380 PTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEE---KVTWDGHSGSMART-QQAAQANI 518          
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_HUMAN (Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.515e-16
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   96 PEPPMRIVKNWKRPE--ERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIR--ETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQNI 512
            P P   IV+    P+  + +P    P ++++SPITGE IP S+M EHMRI L+DP++ EQ++R   + +  +   A   +I  ++  LA  R DIFG  E  +   +  E  +K +E   +V WDGH+ S+ RT  QA   NI
Sbjct:  382 PTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEE---KVTWDGHSGSMART-QQAAQANI 520          
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_BOVIN (Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.515e-16
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   96 PEPPMRIVKNWKRPE--ERIPAERDPTKFVISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIR--ETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTSSIGRTANQAMSQNI 512
            P P   IV+    P+  + +P    P ++++SPITGE IP S+M EHMRI L+DP++ EQ++R   + +  +   A   +I  ++  LA  R DIFG  E  +   +  E  +K +E   +V WDGH+ S+ RT  QA   NI
Sbjct:  382 PTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEE---KVTWDGHSGSMART-QQAAQANI 520          
BLAST of DY263333 vs. ExPASy Swiss-Prot
Match: SF3A1_DICDI (Probable splicing factor 3 subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.205e-13
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 3
Query:   48 LEENDVERKEMQANEDP--EPPMRIVKNWKRPEERIPAERDPTKFV-ISPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRET-----TLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQ---VIWDGHTSSIGR 482
            +EE+ +       N  P  +  ++IVK++++    + +   PTK   +     + IP+ EM EHMRI LI  + ++ +               TL QDD+I+RN+   A  R DIFG TE            KK+DEQP Q   VIWDGH+ SI R
Sbjct:  371 IEESSLSSTNTTGNLPPKDQSKLKIVKDYQKSNSSVKSNA-PTKLTQLCQFCKQEIPLDEMQEHMRIELIQKQQRDSRLGGGGSSNNNNNLTNTLTQDDDIARNLQSFASKRVDIFGETES----------SKKQDEQPTQAPKVIWDGHSGSIPR 515          
The following BLAST results are available for this feature:
BLAST of DY263333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SF3A1_ARATH4.826e-7484.02Probable splicing factor 3 subunit 1 OS=Arabidopsi... [more]
SF3A1_MOUSE3.515e-1637.06Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3... [more]
SF3A1_HUMAN3.515e-1637.06Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3... [more]
SF3A1_BOVIN3.515e-1637.06Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1... [more]
SF3A1_DICDI6.205e-1333.97Probable splicing factor 3 subunit 1 OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263333 ID=DY263333; Name=DY263333; organism=Citrus clementina; type=EST; length=1331bp
ATGAATAAGAGGTGCAGCTTGTTGAAGAGGGCATGAGGGCAGCTAGTCTT
GAAGAAAATGATGTCGAAAGAAAGGAGATGCAGGCTAATGAGGATCCAGA
ACCACCAATGAGAATTGTAAAGAACTGGAAGAGACCTGAGGAGAGGATCC
CTGCTGAAAGAGACCCCACAAAGTTTGTTATTTCCCCCATTACTGGTGAG
CTAATTCCCATTAGTGAAATGTCTGAGCACATGAGAATTTCCCTCATTGA
TCCCAAGTACAAGGAGCAAAAAGAAAGGATGTTCGCTAAGATTCGGGAGA
CGACTCTTGCTCAGGATGATGAGATTTCCAGAAATATTGTTGGGCTTGCA
CGTTTACGGCCTGATATCTTTGGTACCACAGAGGAAGAAGTTTCTAATGC
AGTCAAAGCAGAGATTGAGAAGAAGAAAGATGAGCAACCAAAGCAAGTCA
TATGGGATGGTCATACTAGTAGCATTGGGCGTACAGCAAACCAAGCCATG
TCTCAAAATATTAATGGAGATGATCAAAACAGTGCAGCTAACAGCGATTC
CTCGAATCTACCCGGTCCAGCAGCTCCTCCTCCTCGACCTGGTGTGCCTT
CTTTGCGTCCTCTTCCCCCACCACCGGGACTAGCCTTGAATCTTCCTCGT
GTGCCTCCAAACACAGTCCAGTATTCAACACCCACTAGTGGTGGGATCCC
AGTTCCTCAACAGAGGCAGTTCACTATGCAAGGGATTCCATCAATGCCCC
CAAACCCTCCTTCAATGCCTATAGGTGGACAGCCACCTGTTATGATGAGT
CGACCACCCCCAATGCCACCATCGATTTCCATGAATCCATCTGGTGTGCA
TGTCCCACCGCCTCCTGGATCTCAGTTTACTCATATGCAAGTTCCGCACC
ATTTTGCCCATCTCCCGGGCCCTGCACCACCTCCTGTGACTATAATGCAG
CCCCCACCTTTGCCTCAGGGGATGGCTTCTTCCCCTTCCACTGAAGCTCC
GCCCCCCCTTTCCAAAGAGCCGAAGCCAAAGAGGCCAAAACTTGATGATT
CTATGCTTATTTCCTGAAAATCAATTTCCGGGCCCGCACCCCGGGACCTG
GTTCCGGCCCCCTGGGCTGGTTCCCCAGGTTGGATGAAGGGAAACCTGAA
AGGGGCCACTTTCTGGAAGAATAAAAGTGCGTCCCTTTTATTAAAAATTG
TTTGGGAGTTTTGAAAAAAAAAAAAATTTTTGGGGGGGAAAATCTCCATT
TCCCCTGCCAAAAAAAAACAAAAAAATTTGTAGTGTGAGAAAAACAGCGG
GGTTTTTTTTTTTTAAAGGGAGAAAATTAAA
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