DY263339

Overview
NameDY263339
Unique NameDY263339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1173
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263339_ssr190 microsatellite DY263339_ssr190:190..201. BLAST: Citrus ESTs to Prunus persica proteins V1
DY263339_ssr279 microsatellite DY263339_ssr279:279..293. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY263339 vs. ExPASy Swiss-Prot
Match: NAGK_DICDI (N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.877e-29
Identity = 72/211 (34.12%), Postives = 111/211 (52.61%), Query Frame = 2 
Query:  359 REVILGLDGGTTSTVCICMPVISMSDPLPDPLPVLARAAAGCSNHNSVGEDAARETIE-------KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAGTALTAVIRAYDGRGPKTMLTSKILSTL*LFFSDEL 970
            +E+ +G+DGG T T  + +               LAR  + CSN++SVGED A+  I        + + + +    +    V ++CL +SGV+   D+  + +W+ ++   ++   +HNDA+ AL+SGT GKL G V+I GTG I+ GF             P+LGD+GSGY I    L  V++A D  GPKT LT  +L  L L   ++L
Sbjct:    7 KEIFIGIDGGGTKTSTVAVDSNGQE---------LARHTSPCSNYHSVGEDLAKAAINEGIKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHNDAIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGWGPLLGDYGSGYQIGYDILRHVLKAKDQVGPKTSLTQVLLEKLQLTKEEDL 208
The following BLAST results are available for this feature:
BLAST of DY263339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAGK_DICDI8.877e-2934.12N-acetyl-D-glucosamine kinase OS=Dictyostelium dis... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11BH11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263339 ID=DY263339; Name=DY263339; organism=Citrus clementina; type=EST; length=1173bp
AGCATTTGGCCCCATCTTGCCGTCCGAATCCGAACAATTTCCTTAATTTA
TTATTTATTATTTATACTCCACATTCAAACATCTTCCAATCAAGATTTAA
TAGAAATTAGTTAAATATGGCAAAATGACACACACAATCGCAGTTACAAA
CGCTCGCCATTTCCATTAGCCAGAAACCTCACTTTCTCACTTTCTTTCTT
TTTTTTTTTCCTTTTAATTTATTTTTATTTGTGTGTGTTGTGTCGGAGGA
ATTGTTTGGGGTTAAAAAAAAAAAAAGAAACAGAACAGAACAGTAGATAT
GAAGAGATACAGGAATGGGGAAATCTGGGATTTCGAGACGGCGGAGGAGA
GCGGCGGACGCGAAGTTATATTGGGATTGGACGGTGGGACCACCTCCACC
GTCTGCATATGCATGCCCGTCATTTCCATGTCCGACCCCCTGCCCGACCC
TCTCCCCGTTCTTGCCCGGGCAGCTGCCGGCTGCTCCAATCACAACAGCG
TTGGCGAAGATGCTGCTAGGGAGACAATAGAGAAAGTGATGGCAGATGCA
CTTTTGAAGTCAGGTTCCAATCGGTCTGCTGTTCGAGCTGTTTGTCTTGC
GGTTTCTGGTGTTAACCATCCAACAGATCAGCAAAGAATATTAAACTGGC
TCAGAGACATATTTCCTGGTAACGTAAGGTTGTATGTCCACAATGATGCT
CTCGCAGCTTTGGCGAGTGGAACAATGGGAAAGCTTCATGGATGTGTTCT
AATTGCTGGTACTGGGACCATTGCTTATGGATTTACAGAAGATGGTAGAG
ATGCCCGGGCTGCTGGTGCAGGGCCTATTCTAGGTGATTGGGGAAGTGGA
TATGGGATAGCTGGCACAGCATTAACTGCAGTGATAAGGGCTTATGATGG
ACGCGGCCCAAAAACAATGCTTACATCTAAAATCTTAAGTACACTTTAAC
TTTTCTTCTCAGATGAACTGGATGGGGGGGACCTAAGTAAATTCCTTCTG
GGGCCCGGAAAACTGCCCTTGGTTCCATTTGGTGGATCATGGGGAAAAGG
GCAGGTGAAAAAATTGCCGAAAAAAAACTTGGCAAAAATTCTGGAAAAAA
AAGTGGGTTTTTAATTGTGAAAAGCAGTTTTTTTCAAAAAATTTAATTTT
GGTCGGGGGAAAAGAAGGGAAAA
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