DY263344

Overview
NameDY263344
Unique NameDY263344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1297
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263344 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.379e-17
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:  373 PAPSGLLVRNLPLDARTEELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRKTPQEMR 645
            P  + L VRN+  D R+E+LR  F RYGP+ DVY+P ++YT  PRGF +V+F    DA +A   L+   I GR+I+I FA+ +RKTP +M+
Sbjct:    7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMK 97
[Close]
BLAST of DY263344 vs. ExPASy Swiss-Prot
Match: SF13A_HUMAN (Splicing factor, arginine/serine-rich 13A OS=Homo sapiens GN=SFRS13A PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.379e-17
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:  373 PAPSGLLVRNLPLDARTEELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRKTPQEMR 645
            P  + L VRN+  D R+E+LR  F RYGP+ DVY+P ++YT  PRGF +V+F    DA +A   L+   I GR+I+I FA+ +RKTP +M+
Sbjct:    7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMK 97
[Close]
BLAST of DY263344 vs. ExPASy Swiss-Prot
Match: SRR35_HUMAN (35 kDa SR repressor protein OS=Homo sapiens GN=SRRP35 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.167e-16
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  373 PAPSGLLVRNLPLDARTEELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRKTPQEMRT 648
            P  + L +RN+    R E+LR  F RYGP+ DVY+P ++YT  PRGF +V+F    DA +A   LN   + GR+I+I FA+ +RKTP +M++
Sbjct:    7 PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKS 98
[Close]
BLAST of DY263344 vs. ExPASy Swiss-Prot
Match: RSP4_CAEEL (Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.610e-11
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:  358 GDRRSPAP-----SGLLVRNLPLDARTEELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGREIKIVFAEENRKTPQ 636
            GDRR+ AP     + L + NL       +LR  FERYG + DV++P++ Y+ + +GFGFV+F    DA  A  R +  L+ GRE+++  A+ +R + +
Sbjct:    7 GDRRA-APDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDE 103
The following BLAST results are available for this feature:
BLAST of DY263344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SF13A_MOUSE1.379e-1747.25Splicing factor, arginine/serine-rich 13A OS=Mus m... [more]
SF13A_HUMAN1.379e-1747.25Splicing factor, arginine/serine-rich 13A OS=Homo ... [more]
SRR35_HUMAN1.167e-1644.5735 kDa SR repressor protein OS=Homo sapiens GN=SRR... [more]
RSP4_CAEEL5.610e-1136.73Probable splicing factor, arginine/serine-rich 4 O... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA11CA05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263344 ID=DY263344; Name=DY263344; organism=Citrus clementina; type=EST; length=1297bp
CAAGGAAGAGCACTTTATCCAACTGTGTTAAAAAAAAAAGAAGAACGAAG
TTTAAACTTTAAACCAACCCAAGTTCCCAACAGCCAAACACGCCTTTAAT
TAAGTACTCAGGGAGAGTGCGCTGCGCTGGTGCATATAAACTAAAACTAG
ATCTCTAATTTCATCTCTCCCTCCAAAACTTTCGAAATCTCTCTGCAATT
AGGGTTAGGGTTTTAAAATCTTCTTCCTCTAGTCTATACTAACAAATCAA
AGGCTATGGCGAGATACAGGAGCCGGAGCTACAGTCCTCGCCGACGGAGC
AGGAGTCCTCGGATACGTGGCAGAAAGCGATACGACGATGAGCCTCGCAG
GTCTTACGGAGACCGACGGTCTCCTGCTCCCTCGGGCTTGCTCGTTCGCA
ACCTCCCTCTTGACGCTAGGACGGAGGAACTTAGGGTTGCATTTGAGCGG
TATGGTCCGGTAAAGGATGTGTATCTTCCTAAAAATTACTACACTGGGGA
GCCACGGGGCTTTGGATTCGTGAAGTTCCGTTATGCTGAAGATGCGGCTG
AAGCTAAGCAACGACTCAACCATTCACTTATTGGTGGACGAGAGATAAAA
ATTGTCTTCGCTGAGGAGAATAGGAAAACTCCTCAAGAGATGCGTACGAG
TGCCCGCGTAAGTGGTCGATATGGAGGAAGCTCTAGGAGGACTCCACCAA
GATCTCCAAGACGCCGTTATCATTGTCAGTTTAATTTATTCTTCTGTTTA
TTAGAACTTTCTGGCATGATCATGTTCAAGTTGTGGGGTTGCACTCATCT
GAAGCTGTTTATTATAACGAAACTACTTCTGCAAATCAACTAGGCTTACC
ACTGTAGAATTATGCTAAATTATTTTTTCTCTTTTTGATTCCAGCTTACT
CCCGCTCACCTTCACCAGTGCGTGTCTCAAGATAGTAAAGTGAAAAAGGG
GACTTTTTAAGACTTCAGATTTATAGAGATAAAAGGAGAGATCATAAAGT
CAAACACCATGCTTATCTTTCTATCAAACCTCCTCATATGTATTAATCAT
AGTCTTACCTTCACCAGCTAATCAATGGAATTGGGATCTCTTAATGGGGG
GACATCGGGGTTTGGGAGGGTTATCTAACTTGAAAGAATTGGAAAAACTA
AACTTTCGGGGGAAAAAAAAAAATAATACCCGAGAGAAATACCTTTTTTT
TTTTTTTTCTTCCCCCCAGAAAATTTTCTCAAAAAAAAACTTTGTTTAAA
AATTTTAAATTCATTGGGGTTTGTTTATATAACAAATAACCCTACTT
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