DY263359

Overview
NameDY263359
Unique NameDY263359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1312
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263359_ssr17 microsatellite DY263359_ssr17:17..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2438 contig Ccv1_Contig2438:1..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP115_ARATH (Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.620e-82
Identity = 102/162 (62.96%), Postives = 128/162 (79.01%), Query Frame = 1
Query:   88 LKASATKPESTYFQKRKKHHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRFED 573
            ++ S T+  ST   K+ K       E+DAFPSSLPLH KNP  I++DIQ FARQN L+ AL ILDY++Q+GIPVN TTF+AL+ ACVR +SL+ G+ +H HIRINGLE+N FLRTKLV MYT+CGS +DA+KVFDES+S +VY WNALLRG VI+GKKR++D
Sbjct:   40 IRPSRTRRPSTSPAKKPKPFR----ERDAFPSSLPLHSKNPYIIHRDIQIFARQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQD 197          

HSP 2 Score: 121.709 bits (304), Expect = 2.620e-82
Identity = 80/184 (43.48%), Postives = 97/184 (52.72%), Query Frame = 2
Query:  557 KRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMI-REGIYPNXXXXXXXXXXXXXXXXXD*DKRFMLMC*KMRDI--QRSCLFGLAWLIC----IVSVEI*ILLWRVFNETEERNEILWTALKSGLGPKGEARGRLENHSW 1087
            ++GLKTHAL IKNG  +   L+TSL+DMYFKCGK+ LARRVFDE  +RDIVVWG+MIAG AHN+ +WEAL   R MI  E IYPN                    K       K ++   Q     GL  L C    + S        RVF  +++RN I WTAL SG    G     L +  W
Sbjct:  231 RQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVILTTILPVLGDVKALKLGKEVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMASGR------RVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVW 408          

HSP 3 Score: 56.9954 bits (136), Expect = 3.669e-21
Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 2
Query:  557 KRGLKTHALLIKN-GFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            K G + HA ++K+  +V+   + + LID+Y KCG +   RRVF  +  R+ + W ++++G+A N    +AL    WM +EG  P+
Sbjct:  333 KLGKEVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFRPD 417          

HSP 4 Score: 54.299 bits (129), Expect = 3.669e-21
Identity = 32/106 (30.19%), Postives = 52/106 (49.06%), Query Frame = 1
Query:  247 QNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKR 564
            + + ++ L     M + G+ +NV + + +  +     +L +G   H     NGL N+ FL+T LV MY  CG    A +VFDE     +  W A++ G  +A  KR
Sbjct:  192 KKRYQDVLSTFTEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAG--LAHNKR 295          

HSP 5 Score: 32.3426 bits (72), Expect = 3.669e-21
Identity = 17/47 (36.17%), Postives = 27/47 (57.45%), Query Frame = 1
Query:  817 VTILLPVIGGAWARRLGQEVHAYVLKNERYSEELFVRSSLVDMYCKC 957
            +  +LPV     A + G+E+H Y LKN  +   + + +SL+ MY KC
Sbjct:  421 IATVLPVCAELRAIKQGKEIHCYALKN-LFLPNVSLVTSLMVMYSKC 466          

HSP 6 Score: 53.1434 bits (126), Expect = 4.475e-15
Identity = 28/99 (28.28%), Postives = 49/99 (49.49%), Query Frame = 1
Query:  238 FARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALL 534
            +A   +  +AL  + +M Q+G   +V T   ++  C   R++ +G+ IH +   N    N  L T L+ MY+ CG  E   ++FD     +V  W A++
Sbjct:  393 YAANGRFDQALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAMI 491          

HSP 7 Score: 50.0618 bits (118), Expect = 4.475e-15
Identity = 32/130 (24.62%), Postives = 56/130 (43.08%), Query Frame = 2
Query:  527 LCLEVLSLPGKRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNXXXXXXXXXXXXXXXXXD*DKRFMLMC*KMRDIQRS 916
            +C ++ +L  K G + H  ++K  F     +   +I MY KCG ++ A   FD    +  + W ++I  +  N L  +A++C   M+  G  PN                 D   RF  +  +M ++Q S
Sbjct:  528 VCSDLKAL--KLGKELHGHILKKEFESIPFVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGFVDEAYRFFNLMLRMYNLQPS 655          

HSP 8 Score: 47.3654 bits (111), Expect = 2.040e-11
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 2
Query:  563 GLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAG 733
            G + H  +  NG      LRT L+ MY  CG +K A++VFDE+   ++  W +++ G
Sbjct:  130 GKQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFDESTSSNVYSWNALLRG 186          

HSP 9 Score: 36.1946 bits (82), Expect = 2.040e-11
Identity = 18/38 (47.37%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  844 GAWARRLGQEVHAYVLKNERYSEELFVRSSLVDMYCKC 957
            GA A R G + HA  +KN  ++  +F+++SLVDMY KC
Sbjct:  226 GASALRQGLKTHALAIKNGLFNS-VFLKTSLVDMYFKC 262          

HSP 10 Score: 26.5646 bits (57), Expect = 2.040e-11
Identity = 14/40 (35.00%), Postives = 20/40 (50.00%), Query Frame = 2
Query:  980 RVFNETEERNEILWTALKSGLGPKGEARGRLENHSWEAAG 1099
            RVF+E  ER+ ++W A+ +GL              WEA G
Sbjct:  270 RVFDEIVERDIVVWGAMIAGLAH--------NKRQWEALG 301          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 3.508e-22
Identity = 43/140 (30.71%), Postives = 66/140 (47.14%), Query Frame = 1
Query:  148 TKKSAEKDAF-PSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHI--RINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGK 558
            T+ S  ++ F  S+ P+   +P+    D         L EA   LD  +       V  F  ++  C + R++ +GR +H+ I       E + FL  KLV MY  CGS +DAEKVFDE    + + WN ++   V  G+
Sbjct:   34 TEPSCRRNPFRQSNQPVQVPSPKLACFD-------GVLTEAFQRLDVSENNS---PVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGE 162          

HSP 2 Score: 48.1358 bits (113), Expect = 3.508e-22
Identity = 26/85 (30.59%), Postives = 46/85 (54.12%), Query Frame = 2
Query:  557 KRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDR-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            + G + H+LL+K G+     +  +L+ MY K   +  ARR+FD   ++ D V+W S+++ ++ +    E L+  R M   G  PN
Sbjct:  199 RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283          

HSP 3 Score: 42.3578 bits (98), Expect = 3.508e-22
Identity = 22/58 (37.93%), Postives = 37/58 (63.79%), Query Frame = 1
Query:  802 SEFCCVTILLPVIGGAWARRLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSA 975
            + +  V+ L    G ++A+ LG+E+HA VLK+  +S EL+V ++L+ MY +C  M  A
Sbjct:  283 NSYTIVSALTACDGFSYAK-LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQA 339          

HSP 4 Score: 51.6026 bits (122), Expect = 1.406e-18
Identity = 29/100 (29.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  265 ALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFD--ESSSESVYPWNALLRGAVIAGK 558
            AL +   M  +G+P+ +++F AL+ AC + R +  G  +H+ +   G  + GF+   LV MY        A ++FD  +   ++V  WN++L     +GK
Sbjct:  166 ALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL-WNSILSSYSTSGK 264          

HSP 5 Score: 50.0618 bits (118), Expect = 1.406e-18
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 2
Query:  557 KRGLKTHALLIKNGFVDYSI-LRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREG 796
            K G + HA ++K+      + +  +LI MY +CGK+  A R+  + ++ D+V W S+I G+  N +  EAL+    MI  G
Sbjct:  301 KLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAG 381          

HSP 6 Score: 33.113 bits (74), Expect = 1.406e-18
Identity = 15/31 (48.39%), Postives = 22/31 (70.97%), Query Frame = 1
Query:  865 GQEVHAYVLKNERYSEELFVRSSLVDMYCKC 957
            G E+HAYV+K+  +   L V ++L+DMY KC
Sbjct:  405 GMELHAYVIKHG-WDSNLQVGNTLIDMYSKC 434          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.434e-22
Identity = 43/166 (25.90%), Postives = 74/166 (44.58%), Query Frame = 1
Query:   43 SFPPNPISNNHQFFKLKASATKPESTYFQKRKKHHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING--LENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALL 534
            S P N I N   F    + ++KP S       KHH +++            H  +  + +  +    +  ++KEAL ++  MD + + +    +  ++  CV  R L  G+ IH  I  NG     N ++ TKLV  Y  C + E AE +F +    +V+ W A++
Sbjct:    3 SLPFNTIPNKVPF----SVSSKPSS-------KHHDEQA------------HSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAII 145          

HSP 2 Score: 62.003 bits (149), Expect = 6.434e-22
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  512 FILGMLCLEVLSLPGKR-GLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP 805
            F++  +C    +L   R G   H  ++K+G  D   + +SL DMY KCG +  A +VFDE  DR+ V W +++ G+  N    EA+     M ++G+ P
Sbjct:  174 FVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEP 272          

HSP 3 Score: 63.5438 bits (153), Expect = 1.964e-20
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  557 KRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            K G +     I++ F    +L ++++DMY KCG I  A++VFD T ++D+++W +++A +A + L  EAL     M  EG+ PN
Sbjct:  392 KLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPN 475          

HSP 4 Score: 57.7658 bits (138), Expect = 1.964e-20
Identity = 31/106 (29.25%), Postives = 50/106 (47.17%), Query Frame = 1
Query:  238 FARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAG 555
            + +  K +EA+ +   M +QG+     T +  ++A      + EG+  H    +NG+E +  L T L+  Y   G  E AE VFD    + V  WN ++ G V  G
Sbjct:  249 YVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQG 354          

HSP 5 Score: 55.4546 bits (132), Expect = 6.319e-20
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 1
Query:  277 LDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGK 558
            ++ ++ +  P N    N +  AC   +    GR +H ++  +GLE+  F+ + L  MY  CG  +DA KVFDE    +   WNAL+ G V  GK
Sbjct:  162 VEMLENEIFPDNFVVPN-VCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGK 254          

HSP 6 Score: 52.7582 bits (125), Expect = 6.319e-20
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  557 KRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEAL 766
            + G ++HA+ I NG    +IL TSL++ Y K G I+ A  VFD   ++D+V W  +I+G+    L  +A+
Sbjct:  291 EEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAI 360          

HSP 7 Score: 31.187 bits (69), Expect = 6.319e-20
Identity = 15/53 (28.30%), Postives = 31/53 (58.49%), Query Frame = 1
Query:  805 EFCCVTILLPVIGGAWAR--RLGQEVHAYVLKNERYSEELFVRSSLVDMYCKC 957
            ++ CVT+   +   A     +LG+EV  Y +++  +  ++ + S+++DMY KC
Sbjct:  372 KYDCVTLATLMSAAARTENLKLGKEVQCYCIRHS-FESDIVLASTVMDMYAKC 423          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.640e-21
Identity = 33/109 (30.28%), Postives = 56/109 (51.38%), Query Frame = 1
Query:  229 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAG 555
            ++RF     L+ A+ +L    +  I  +  T  +++  C  ++SL +G+ +   IR NG   +  L +KL  MYT+CG  ++A +VFDE   E    WN L+     +G
Sbjct:   68 LRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174          

HSP 2 Score: 56.225 bits (134), Expect = 3.640e-21
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  563 GLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGI 799
            G + H  ++K+GF + + +  SL+  Y K  ++  AR+VFDE  +RD++ W S+I G+  N L  + L     M+  GI
Sbjct:  214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI 292          

HSP 3 Score: 30.0314 bits (66), Expect = 3.640e-21
Identity = 17/40 (42.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  862 LGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSALA 981
            LG+ VH+  +K     E+ F  ++L+DMY KC D++SA A
Sbjct:  314 LGRAVHSIGVKACFSREDRFC-NTLLDMYSKCGDLDSAKA 352          

HSP 4 Score: 56.9954 bits (136), Expect = 1.411e-18
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 2
Query:  563 GLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            G   H++ +K  F        +L+DMY KCG +  A+ VF E  DR +V + SMIAG+A   L  EA+     M  EGI P+
Sbjct:  315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPD 396          

HSP 5 Score: 45.0542 bits (105), Expect = 1.411e-18
Identity = 26/109 (23.85%), Postives = 46/109 (42.20%), Query Frame = 1
Query:  229 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAG 555
            +   A+      ++ +   M   G+ ++  TF+ +  +    RS+  G  +H  I  +G      +   LV  Y      + A KVFDE +   V  WN+++ G V  G
Sbjct:  167 MNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275          

HSP 6 Score: 32.7278 bits (73), Expect = 1.411e-18
Identity = 14/37 (37.84%), Postives = 24/37 (64.86%), Query Frame = 1
Query:  865 GQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSA 975
            G+ VH ++ +N+    ++FV ++L+DMY KC  M  A
Sbjct:  416 GKRVHEWIKEND-LGFDIFVSNALMDMYAKCGSMQEA 451          

HSP 7 Score: 73.9442 bits (180), Expect = 2.314e-12
Identity = 36/104 (34.62%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  229 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRG 540
            I  +AR+    EA+ + + M+++GI  +V T  A++  C R R L EG+ +H  I+ N L  + F+   L+ MY  CGS ++AE VF E   + +  WN ++ G
Sbjct:  369 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 472          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.320e-21
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  563 GLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            G   H  L+K GF     +  +L+ MY KCG I  AR VFD    +D V W SM+ G+ H+ L  EALD  R M++ GI P+
Sbjct:  214 GEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPD 295          

HSP 2 Score: 57.3806 bits (137), Expect = 5.320e-21
Identity = 45/165 (27.27%), Postives = 73/165 (44.24%), Query Frame = 1
Query:   88 LKASATKPESTYFQKRKKHHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTT-FNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESS--SESVYPWNALLRGAVIAGKKRFED 573
            + +S+ K +  + Q+ K+H   +         S       P  I K      +   L   +  L+   Q+GI +     F +L+  C   R++  G  +H  I    L NN  + +KLV++Y SCG  E A +VFD  S    S + WN+L+ G    G  ++ED
Sbjct:   16 VSSSSMKKKPRHHQQLKQHRQNQYNNNGFTSLSFTKPSPTPLLIEKQSIHRTQLEALDSVITDLETSAQKGISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELG--QYED 178          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 4.363e-20
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  557 KRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            + G + HA++IK       I+ ++L+DMYFKC       RVFD+   R+++ W S+I+G+ ++    E L C   M  EG  PN
Sbjct:  226 EHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPN 309          

HSP 2 Score: 54.6842 bits (130), Expect = 4.363e-20
Identity = 35/158 (22.15%), Postives = 68/158 (43.04%), Query Frame = 1
Query:   82 FKLKASATKPESTYFQKRKKHHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAG 555
            F+ +AS T    + F        ++   +         +++    + K ++      +LKEA+ +L      G+ V   T+  L+  C + +   +G+ IH  + + G   N +L+ KL+ +Y   G  + A  +F       + PWNA++ G V  G
Sbjct:   34 FQTEASQTSASGSMFSGNATTILRRMLAEKRIGRFQVENQRKTEKLDKTLKGLCVTGRLKEAVGLLW---SSGLQVEPETYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKG 188          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.943e-20
Identity = 29/104 (27.88%), Postives = 50/104 (48.08%), Query Frame = 1
Query:  229 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRG 540
            I RF+R     +AL++   M ++ +  N  T+ +++ +C     L EG  IH  +       N  +R+ L+ +Y  CG  E+A   FD      +  WNA++ G
Sbjct:   86 ISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDG 189          

HSP 2 Score: 47.7506 bits (112), Expect = 4.943e-20
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 2
Query:  530 CLEVLSLPGKRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFA-HNRLRWEALDCARWMIR 790
            CLE++S       + H L IK GF   S L  SL++ Y KCG +  A ++ + T  RD++   ++I GF+  N    +A D  + MIR
Sbjct:  230 CLEIVS-------ELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIR 310          

HSP 3 Score: 31.9574 bits (71), Expect = 4.943e-20
Identity = 11/39 (28.21%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  862 LGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAL 978
            +G+++H + LK+ +   ++ + +SL+DMY K  ++  A+
Sbjct:  335 IGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAV 373          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.869e-19
Identity = 33/123 (26.83%), Postives = 52/123 (42.28%), Query Frame = 1
Query:  187 LPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAG 555
            L L   + R     I  F R   L +AL     M   G+  +V+TF  L+ ACV  ++      +   +   G++ N F+ + L+K Y   G  +   K+FD    +    WN +L G    G
Sbjct:   96 LDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218          

HSP 2 Score: 51.9878 bits (123), Expect = 3.869e-19
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 2
Query:  563 GLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            G++ H L++ +G      ++ SL+ MY KCG+   A ++F      D V W  MI+G+  + L  E+L     MI  G+ P+
Sbjct:  258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPD 339          

HSP 3 Score: 32.7278 bits (73), Expect = 3.869e-19
Identity = 15/50 (30.00%), Postives = 30/50 (60.00%), Query Frame = 1
Query:  826 LLPVIGGAWARRLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSA 975
            LLP +         +++H Y++++   S ++F+ S+L+D Y KCR ++ A
Sbjct:  346 LLPSVSKFENLEYCKQIHCYIMRHS-ISLDIFLTSALIDAYFKCRGVSMA 394          

HSP 4 Score: 61.2326 bits (147), Expect = 9.766e-15
Identity = 26/78 (33.33%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  575 HALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            H  ++++       L ++LID YFKC  + +A+ +F + +  D+VV+ +MI+G+ HN L  ++L+  RW+++  I PN
Sbjct:  363 HCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPN 440          

HSP 5 Score: 40.817 bits (94), Expect = 9.766e-15
Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  826 LLPVIGGAWARRLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSA 975
            +LPVIG   A +LG+E+H +++K + +     +  +++DMY KC  MN A
Sbjct:  447 ILPVIGILLALKLGRELHGFIIK-KGFDNRCNIGCAVIDMYAKCGRMNLA 495          

HSP 6 Score: 60.4622 bits (145), Expect = 2.367e-12
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  482 KYLMKVLV---RVFILGMLCLEVLSLPGKRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGI 799
            ++L+KV +    + ++ +L +  + L  K G + H  +IK GF +   +  ++IDMY KCG++ LA  +F+    RDIV W SMI   A +     A+D  R M   GI
Sbjct:  430 RWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGI 538          

HSP 7 Score: 33.4982 bits (75), Expect = 2.367e-12
Identity = 18/64 (28.12%), Postives = 36/64 (56.25%), Query Frame = 1
Query:  799 ISEFC--CVTI--LLPVIGGAWARRLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAL 978
            +S  C  CV+I   L       +   G+ +H +++K+   S+ ++  S+L+DMY KC ++ +A+
Sbjct:  535 VSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASD-VYSESTLIDMYAKCGNLKAAM 597          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.889e-19
Identity = 27/82 (32.93%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  563 GLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN 808
            G + H  +  +GF     +  +LID+Y KCG+++ A  +F+    +D++ W ++I G+ H  L  EAL   + M+R G  PN
Sbjct:  285 GRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366          

HSP 2 Score: 47.3654 bits (111), Expect = 3.889e-19
Identity = 32/128 (25.00%), Postives = 53/128 (41.41%), Query Frame = 1
Query:  265 ALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDA-------------------------------EKVFDESSSESVYPWNALLRGAVIAG 555
            AL +   M   G+  N  TF  ++ +C ++++  EG+ IH H+   G + + ++ T L+ MY   G  EDA                               +K+FDE   + V  WNA++ G    G
Sbjct:  118 ALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 245          

HSP 3 Score: 33.8834 bits (76), Expect = 3.889e-19
Identity = 17/51 (33.33%), Postives = 29/51 (56.86%), Query Frame = 1
Query:  826 LLPVIGGAWARRLGQEVHAYVLKNER-YSEELFVRSSLVDMYCKCRDMNSA 975
            +LP      A  +G+ +H Y+ K  +  +    +R+SL+DMY KC D+ +A
Sbjct:  373 ILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 423          

HSP 4 Score: 70.0922 bits (170), Expect = 3.341e-11
Identity = 42/125 (33.60%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  211 RAIYKD-------IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHI--RINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGK 558
            R  YKD       I  +   N  KEAL++   M + G   N  T  +++ AC    ++  GR IH +I  R+ G+ N   LRT L+ MY  CG  E A +VF+    +S+  WNA++ G  + G+
Sbjct:  326 RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 450          
BLAST of DY263359 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.313e-18
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  518 LGMLCLEVLSLPGKRGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEAL 766
            LG+L  E +   G RGL+ H +++KNG      +  SLI++Y KCG ++ AR +FD+T+ + +V W SMI+G+A N L  EAL
Sbjct:  201 LGVLAEEGV---GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEAL 280          

HSP 2 Score: 44.669 bits (104), Expect = 1.313e-18
Identity = 25/101 (24.75%), Postives = 48/101 (47.52%), Query Frame = 1
Query:  238 FARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRG 540
            F+R  + +EA  +   + + G+ ++ + F++++         + GR +H      G  ++  + T LV  Y    +F+D  KVFDE    +V  W  L+ G
Sbjct:   68 FSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISG 168          

HSP 3 Score: 47.7506 bits (112), Expect = 1.823e-12
Identity = 25/75 (33.33%), Postives = 41/75 (54.67%), Query Frame = 2
Query:  560 RGLKTHALLIKNGFVDYSILRTSLIDMYFKCGKIKLARRVFDETDDRDIVVWGSMIAGFAHNRLRWEALDCARWM 784
            +G + H   IK+       + ++L+ MY K G I+ A  VF    ++D+V W SMI+G+A +    +ALD  + M
Sbjct:  513 QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 587          

HSP 4 Score: 46.595 bits (109), Expect = 1.823e-12
Identity = 26/110 (23.64%), Postives = 51/110 (46.36%), Query Frame = 1
Query:  229 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGK 558
            I  F + +  +EA+ +   M ++G+  N  T++ ++TA      ++    +H  +     E +  + T L+  Y   G  E+A KVF     + +  W+A+L G    G+
Sbjct:  369 ISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL----PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 474          
The following BLAST results are available for this feature:
BLAST of DY263359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP115_ARATH2.620e-8262.96Pentatricopeptide repeat-containing protein At1g71... [more]
PP296_ARATH3.508e-2230.71Pentatricopeptide repeat-containing protein At3g63... [more]
PP431_ARATH6.434e-2225.90Pentatricopeptide repeat-containing protein At5g55... [more]
PP320_ARATH3.640e-2130.28Pentatricopeptide repeat-containing protein At4g18... [more]
PP337_ARATH5.320e-2142.68Pentatricopeptide repeat-containing protein At4g25... [more]
PP315_ARATH4.363e-2035.71Pentatricopeptide repeat-containing protein At4g16... [more]
PP244_ARATH4.943e-2027.88Pentatricopeptide repeat-containing protein At3g20... [more]
PP333_ARATH3.869e-1926.83Pentatricopeptide repeat-containing protein At4g21... [more]
PPR21_ARATH3.889e-1932.93Pentatricopeptide repeat-containing protein At1g08... [more]
PP172_ARATH1.313e-1843.37Pentatricopeptide repeat-containing protein At2g27... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11CB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263359 ID=DY263359; Name=DY263359; organism=Citrus clementina; type=EST; length=1312bp
AGCACATAGGCGCTAGCTCTCTCTCTGTCTCTTTGTGTTCACAGTTTCCC
TCCAAATCCTATCAGCAACAACCACCAATTCTTCAAACTCAAAGCTTCAG
CAACAAAACCCGAATCAACGTACTTCCAAAAACGTAAGAAGCACCACACC
AAAAAATCGGCCGAAAAAGATGCATTTCCATCGTCGTTACCGCTCCACGA
AAAGAACCCACGTGCCATTTACAAGGACATTCAAAGATTCGCGAGGCAAA
ACAAGCTCAAGGAGGCCCTTGTCATCTTGGACTACATGGACCAGCAAGGT
ATCCCTGTTAACGTCACCACGTTCAATGCTCTTATTACTGCTTGTGTTCG
AACTAGATCGTTAGTGGAAGGGAGACTAATTCATACCCATATTCGGATTA
ATGGGTTGGAGAATAATGGGTTCCTGCGAACGAAACTTGTGAAAATGTAT
ACCTCTTGTGGGTCCTTTGAGGATGCGGAGAAAGTATTTGATGAAAGTTC
TAGTGAGAGTGTTTATCCTTGGAATGCTTTGCTTAGAGGTGCTGTCATTG
CCGGGAAAAAGAGGTTTGAAGACACATGCGTTGTTGATCAAGAATGGTTT
CGTTGATTATTCGATTCTTAGGACCAGTTTGATTGATATGTATTTCAAAT
GTGGCAAAATTAAGCTCGCTAGGAGGGTGTTTGATGAAACTGATGACAGA
GATATAGTTGTGTGGGGGTCCATGATTGCGGGTTTTGCCCATAATAGATT
GCGCTGGGAAGCTTTGGATTGTGCCAGGTGGATGATTCGTGAAGGGATAT
ATCCGAATTCTGTTGTGTTACTATATTACTCCCTGTGATTGGGGGAGCTT
GGGCGCGGAGACTAGGACAAGAGGTTCATGCTTATGTGTTGAAAAATGAG
AGATATTCAGAGGAGTTGTTTGTTCGGTCTAGCTTGGTTGATATGTATTG
TAAGTGTAGAGATATGAATTCTGCTTTGGCGGGTGTTTAATGAAACGGAG
GAGAGGAATGAAATTTTATGGACTGCTTTGAAGTCCGGGTTAGGTCCCAA
AGGGGAGGCTCGAGGAAGGCTTGAAAATCATAGCTGGGAAGCCGCAGGGA
AGGGTTCGGGCCCGGAGGGTGGCCCGTTGGCTAGGGGTTACCCGGGTTGG
GTTCCCCTTTGGAGGGTTTGAAACCACGGGGAAGGGAAAAAAAAGGGCCT
TATGGGGGGGCAGAAAAAAAATTTCCCCCCCCCCAGGGGGGGGAAAAAAA
TAAAAAACCTCTTTTTAGAGAAAAAAAGAGGGGGAACCACCCAAAAGAGG
GGGGGGGGGGGG
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