DY263614

Overview
NameDY263614
Unique NameDY263614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1209
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263614 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 1.595e-113
Identity = 214/292 (73.29%), Postives = 231/292 (79.11%), Query Frame = 3
Query:  231 DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASTGIPSIVFLPAKKISKAQLVQPIANGGFCFEY*Y*FPRVVIXXXXXXXXXCPINWPNSLKNFKGWKAKKLLP*KNLQQFNWEIAKIGGLNPGGQSWKNFIPFKKGFK 1106
            ++NIRDEARR RS   N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HDME+LK+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCAS GIPSIVFLPA KIS AQLVQPIANG F       F    +          PI   NSL + +  + +K    + LQQF+W++     + PGG +  N   F KGFK
Sbjct:   61 EDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDG-CMKLIREITAELPIYLANSLNSLR-LEGQKTAAIEILQQFDWQVPD-WVIVPGG-NLGNIYAFYKGFK 348          
BLAST of DY263614 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 1.264e-110
Identity = 211/292 (72.26%), Postives = 231/292 (79.11%), Query Frame = 3
Query:  231 DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASTGIPSIVFLPAKKISKAQLVQPIANGGFCFEY*Y*FPRVVIXXXXXXXXXCPINWPNSLKNFKGWKAKKLLP*KNLQQFNWEIAKIGGLNPGGQSWKNFIPFKKGFK 1106
            DENIR+EARR  S+ N  FSA+YVPFNAGP+S E+YSLDEIVYRSRSGGLLDVQHDM++LKKFDG YWR LFDSRVGKTTWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGKQFLGM DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKM +PVVGVGCASTGDTSAALSAYCAS GIPSIVFLPA KIS AQLVQPIANG F       F    +          PI   NSL + +  + +K    + LQQF+WE+ +   + PGG +  N   F KGF+
Sbjct:   56 DENIREEARRHCSSHN--FSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDG-CMQLIREVTAELPIYLANSLNSLR-LEGQKTAAIEILQQFDWEVPE-WVIVPGG-NLGNIYAFYKGFQ 341          
BLAST of DY263614 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 3.015e-104
Identity = 209/347 (60.23%), Postives = 237/347 (68.30%), Query Frame = 3
Query:   63 MASCSLFHPQTKIKPFNQNHPRLTYRPPTVISCSFXXXXXXXXXXXXXXXXXXXXXDENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASTGIPSIVFLPAKKISKAQLVQPIANGGFCFEY*Y*FPRVVIXXXXXXXXXCPINWPNSLKNFKGWKAKKLLP*KNLQQFNWEIAKIGGLNPGGQSWKNFIPFKKGF 1103
            MAS SL H  T    +  +H   + +P +  S +                      DENIRDEARR+     N  SA+YVPFNA P S E YSLDEIVYRS+SG LLDVQHD  +LK++DG +WR+LFDSRVGKT WPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFGKQ+L MNDLWVKHCGISHTGSFKDLGM+VLVSQVNRLRKM +PV+GVGCASTGDTSAALSAYCAS GIPSIVFLPA KIS AQLVQPIANG F       F    +          PI   NSL + +  + +K    + LQQFNW++     + PGG +  N   F KGF
Sbjct:    1 MASFSLPHSAT----YFPSHSETSLKPHSAASFTVRCTSASPAVPPQTPQKPRRSPDENIRDEARRRPHQLQN-LSARYVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQYLQMNDLWVKHCGISHTGSFKDLGMSVLVSQVNRLRKMNKPVIGVGCASTGDTSAALSAYCASAGIPSIVFLPADKISMAQLVQPIANGAFVLSIDTDFDG-CMHLIREVTAELPIYLANSLNSLR-LEGQKTAAIEILQQFNWQVPD-WVIVPGG-NLGNIYAFYKGF 338          
BLAST of DY263614 vs. ExPASy Swiss-Prot
Match: THRC_METJA (Probable threonine synthase OS=Methanocaldococcus jannaschii GN=thrC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.445e-21
Identity = 85/258 (32.95%), Postives = 125/258 (48.45%), Query Frame = 3
Query:  336 YSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASTGIPSIVFLPAKKISKAQLVQPIANGGFCFEY*Y*FPRVVIXXXXXXXXXCPINWPNSLKNFKGWKAKKLLP*KNLQQFNWE-----IAKIGGLNPGGQSWKNFIPFK 1094
            Y +DEI+Y    GGLL++ +D E +K         + + ++ K       GVW   E+ LP  D   IVS  EG + L+      K+ LG+ +L+VK+ G + TGSFKD GMTV V++ N L      V  VGCASTG+TSA+L+AY A +G   IV LP  K++  +L Q +  G    +    F   +            I   NS+  F+  + +K +  +   Q NW+     I  +G        WK F  F+
Sbjct:   12 YDVDEIIYTCECGGLLEIIYDYEEIKD-------KVSEEKLRKRE----IGVWRYLEY-LPVKDESKIVSLCEGGTPLYRCNNLEKE-LGIKELYVKNEGANPTGSFKDRGMTVGVTRANELG-----VEVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFDDALDMVKQLAKEKL-IYLLNSINPFR-LEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNISAIWKGFKEFE 249          
The following BLAST results are available for this feature:
BLAST of DY263614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
THRC1_ARATH1.595e-11373.29Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC_SOLTU1.264e-11072.26Threonine synthase, chloroplastic OS=Solanum tuber... [more]
THRC2_ARATH3.015e-10460.23Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
THRC_METJA2.445e-2132.95Probable threonine synthase OS=Methanocaldococcus ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA12BA11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263614 ID=DY263614; Name=DY263614; organism=Citrus clementina; type=EST; length=1209bp
CACAACACGAGCACCAGCACAAAGATACCCAAAACGACAGCCGCTGTGAG
CATTTATCGAACATGGCATCTTGCTCACTGTTTCACCCCCAAACCAAAAT
CAAACCGTTCAATCAAAACCACCCTCGCCTCACATACCGTCCGCCCACCG
TTATCTCTTGCAGCTTCTCCACATCCAATCCCTCCTCTCCTCCTCCACCA
GCAGCGGCTTCAAAAAATCGCCGCGCAGCCGATGAGAACATTCGTGACGA
AGCTCGACGACAACGTTCCACTACAAATAACACTTTTTCCGCGAAGTACG
TACCCTTCAATGCGGGTCCTGATTCACCCGAGTTCTACTCGCTCGACGAG
ATTGTCTACCGGAGCCGCTCCGGCGGCCTTCTCGACGTTCAGCACGACAT
GGAGTCGTTGAAGAAATTCGACGGCGCCTACTGGAGAGACCTCTTCGACT
CTCGCGTGGGTAAGACCACTTGGCCTTATGGTTCCGGAGTGTGGAGCAAA
AAGGAGTGGGTCCTACCTGAGATCGATCCTGACGACATTGTTTCGGCCTT
TGAAGGGAACTCCAACTTGTTCTGGGCGGAGCGTTTTGGCAAACAGTTCC
TGGGCATGAATGATTTGTGGGTTAAACACTGCGGTATTAGCCACACTGGG
AGTTTCAAAGACTTGGGCATGACCGTTTTGGTCAGCCAAGTCAACAGACT
TCGTAAAATGAAACGACCCGTCGTCGGAGTCGGCTGTGCATCCACCGGTG
ACACATCAGCTGCTCTATCTGCTTATTGTGCCTCAACAGGTATTCCTTCC
ATTGTGTTTTTACCTGCCAAAAAAATTTCAAAAGCTCAATTGGTGCAGCC
AATTGCCAATGGGGGCTTTTGTTTTGAATATTGATACTGATTTCCAAGGG
TTGTAATAAATTAATTAAAAAAGTTACTTCTGAATTGCCCAATTAATTGG
CCCAATTCATTGAAAAATTTTAAGGGTTGGAAGGCAAAAAAACTGCTGCC
GTAAAAAAATTTGCAACAATTTAATTGGGAAATTGCCAAAATTGGGGGAT
TGAACCCGGGGGGCCAATCTTGGAAAAATTTTATTCCCTTTAAAAAAGGT
TTCAAAAAGGTTCCAAGAATATAAGGGCTTGGAAAAAAAAAAGGCCCCCG
CCTTGGTTTGTCCCCCCGGCGGGAAAAAAGCCAATACCCCCTTTTTATTT
TTAATAAAA
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