Abu1g_004420.3
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A2H5PJB3|A0A2H5PJB3_CITUN (Ribosomal protein L25 beta domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_141760 PE=4 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 2.565e-115 Identity = 161/167 (96.41%), Postives = 167/167 (100.00%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
MTLWCRTVQKVAHNS+TPFS+TTSY+HTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQI+SILKSV+LPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVE+CPGLKKG
Sbjct: 1 MTLWCRTVQKVAHNSRTPFSRTTSYYHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKG 167
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A067GVH3|A0A067GVH3_CITSI (Ribosomal protein L25 beta domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026232mg PE=4 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 2.565e-115 Identity = 161/167 (96.41%), Postives = 167/167 (100.00%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
MTLWCRTVQKVAHNS+TPFS+TTSY+HTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQI+SILKSV+LPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVE+CPGLKKG
Sbjct: 1 MTLWCRTVQKVAHNSRTPFSRTTSYYHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKG 167
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: V4SJP9|V4SJP9_CITCL (Ribosomal protein L25 beta domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10026371mg PE=4 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 8.850e-115 Identity = 160/167 (95.81%), Postives = 167/167 (100.00%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
MTLWCRTVQKVAHNS+TPFS+TTSY+HTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLD+NTDRRSPSRKQILSTERKQI+SILKSV+LPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVE+CPGLKKG
Sbjct: 1 MTLWCRTVQKVAHNSRTPFSRTTSYYHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKG 167
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A7J7CVV0|A0A7J7CVV0_TRIWF (Ribosomal protein L25/Gln-tRNA synthetase anti-codon-binding domain OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01097 PE=4 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 2.082e-85 Identity = 130/171 (76.02%), Postives = 147/171 (85.96%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTP----FSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
M W R ++ V H S+ P SQT+SY HTIQAIPRECTG+RVSARDR+QGRIPAVVFAQ LL+KN RS SRKQ+L+TERKQI SILKSV+LPFFCSTTFPLQIRAGSGSSVLL+SG VLP+K+HRD ETG+ILNLVFVWAD+GTELKVDVPVVFKG E+ PGL+KG
Sbjct: 1 MAKWWRGLRTVVHGSRFPQPASHSQTSSY-HTIQAIPRECTGNRVSARDRAQGRIPAVVFAQSLLEKNPSSRSLSRKQLLTTERKQIQSILKSVELPFFCSTTFPLQIRAGSGSSVLLESGNVLPVKIHRDAETGKILNLVFVWADEGTELKVDVPVVFKGEEDSPGLQKG 170
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A5C7HRG3|A0A5C7HRG3_9ROSI (Ribosomal protein L25 beta domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_014057 PE=4 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 2.443e-84 Identity = 123/168 (73.21%), Postives = 145/168 (86.31%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHN-SKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
M+ WCR+++ V N + ++S +HTIQAIPRECTGSR++ARDR+QGRIPAVV +Q+LL+KN RSP+RKQ+L+TERKQI +IL SV LPFF STTFPLQIRAGSGSSVLL+SGKVLPIKVH++EETG I NLVFVWADDGTELKVDVPVVFKG +NCPGLKKG
Sbjct: 1 MSRWCRSLKTVVQNPNSPFSLTSSSSYHTIQAIPRECTGSRIAARDRAQGRIPAVVLSQNLLEKNPQNRSPARKQLLTTERKQIQAILNSVDLPFFYSTTFPLQIRAGSGSSVLLESGKVLPIKVHKNEETGSIFNLVFVWADDGTELKVDVPVVFKGEDNCPGLKKG 168
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: B9S8K5|B9S8K5_RICCO (50S ribosomal protein L25, putative OS=Ricinus communis OX=3988 GN=RCOM_0602110 PE=4 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 3.621e-84 Identity = 124/167 (74.25%), Postives = 145/167 (86.83%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
M W R ++ V +S + +S++HTIQAIPRECTGSRV+ARDR+QGRIPAVVF+Q LLDKN + RS SRKQ+L+TERKQI SIL SV+LPFFCSTTF LQIRAGSGSSVL++SG +LPIKVHRDEETG+ILNLVFVWADDGTELKVDVP++FKG E+CPGLKKG
Sbjct: 1 MAKWLRGLKTVVQSSSPSLNSQSSFYHTIQAIPRECTGSRVAARDRAQGRIPAVVFSQSLLDKNPNSRSISRKQLLTTERKQIQSILTSVELPFFCSTTFNLQIRAGSGSSVLIESGTILPIKVHRDEETGKILNLVFVWADDGTELKVDVPLIFKGEEDCPGLKKG 167
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A5D2A5T9|A0A5D2A5T9_GOSDA (Ribosomal protein L25 beta domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_D12G078500v1 PE=4 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 4.801e-84 Identity = 125/167 (74.85%), Postives = 144/167 (86.23%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
+ LW R ++ V S T ++HTIQAIPRECTGSR+S+RDR+QGRIPAVVF+Q LL+KN RSPSRKQIL+TERKQI SI+KSV+LPFFCST F LQIRAGSGSSVLL+SG VLPIK+HRDEE+G+ILNLVFVWAD+GTELKVDVPVVFKG+ENCPGLKKG
Sbjct: 2 LRLW-RGLKTVVQTSPA----NTHHYHTIQAIPRECTGSRISSRDRAQGRIPAVVFSQGLLEKNPSNRSPSRKQILTTERKQIRSIIKSVQLPFFCSTRFQLQIRAGSGSSVLLESGTVLPIKIHRDEESGKILNLVFVWADEGTELKVDVPVVFKGLENCPGLKKG 163
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A5J5NZJ1|A0A5J5NZJ1_GOSBA (Ribosomal protein L25 beta domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D12G075000v1 PE=4 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 4.801e-84 Identity = 125/167 (74.85%), Postives = 144/167 (86.23%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
+ LW R ++ V S T ++HTIQAIPRECTGSR+S+RDR+QGRIPAVVF+Q LL+KN RSPSRKQIL+TERKQI SI+KSV+LPFFCST F LQIRAGSGSSVLL+SG VLPIK+HRDEE+G+ILNLVFVWAD+GTELKVDVPVVFKG+ENCPGLKKG
Sbjct: 2 LRLW-RGLKTVVQTSPA----NTHHYHTIQAIPRECTGSRISSRDRAQGRIPAVVFSQGLLEKNPSNRSPSRKQILTTERKQIRSIIKSVQLPFFCSTRFQLQIRAGSGSSVLLESGTVLPIKIHRDEESGKILNLVFVWADEGTELKVDVPVVFKGLENCPGLKKG 163
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A0D2R829|A0A0D2R829_GOSRA (Ribosomal protein L25 beta domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_008G073500 PE=4 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 4.850e-84 Identity = 124/167 (74.25%), Postives = 144/167 (86.23%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
+ LW R ++ V S T ++HTIQAIPRECTGSR+S+RDR+QGRIPAVVF+Q LL+KN RSPSRKQIL+TERKQI SI+KSV+LPFFCST F LQIRAGSGSSVLL+SG VLPIK+HRDEE+G+ILNLVFVWAD+GTELKVDVPVVFKG+E+CPGLKKG
Sbjct: 2 LRLW-RGLKTVVQTSPA----NTHHYHTIQAIPRECTGSRISSRDRAQGRIPAVVFSQGLLEKNPSNRSPSRKQILTTERKQIRSIIKSVQLPFFCSTRFQLQIRAGSGSSVLLESGTVLPIKIHRDEESGKILNLVFVWADEGTELKVDVPVVFKGLEDCPGLKKG 163
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Match: A0A5D2SCV4|A0A5D2SCV4_GOSMU (Ribosomal protein L25 beta domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D12G075800v1 PE=4 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 2.856e-83 Identity = 124/167 (74.25%), Postives = 144/167 (86.23%), Query Frame = 0 Query: 1 MTLWCRTVQKVAHNSKTPFSQTTSYFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
+ LW R ++ V S T ++HTIQAIPRECTGSR+S+RDR+QGRIPAVVF+Q LL+KN RSPSRKQIL+TERKQI SI+KSV+LPFFCST F LQIRAGSGSSVLL+SG VLPIK+HRDEE+G+ILNLVFVWAD+GTELKVDVPVVFKG+E+CPGLKKG
Sbjct: 2 LRLW-RGLKTVVQTSPA----NTHHYHTIQAIPRECTGSRISSRDRAQGRIPAVVFSQGLLEKNRSNRSPSRKQILTTERKQIRSIIKSVQLPFFCSTRFQLQIRAGSGSSVLLESGTVLPIKIHRDEESGKILNLVFVWADEGTELKVDVPVVFKGLEDCPGLKKG 163
BLAST of Abu1g_004420.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:26701233-26702531 REVERSE LENGTH=249) HSP 1 Score: 218.779 bits (556), Expect = 2.356e-72 Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 0 Query: 1 MTLWCRTVQ----KVAHNSKTPFSQTTSYFH---TIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKG 167
M W R ++ +VA + F ++ H TIQAIPRE TG VSARDR+ GRIPAVVF Q LLD + +R SRKQ+L+ ++KQI SI+ SV LPFFCSTTF LQIRAG GSS L++SG+VLP+KVHRDEETG+ILNLVFVWADDG +LKVDVPVVFKG+++CPGL+KG
Sbjct: 1 MAKWWRGLRSVTAEVADLPASSFGRSIRCIHQYQTIQAIPREATGRGVSARDRTIGRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSIIDSVGLPFFCSTTFQLQIRAGQGSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEKLKVDVPVVFKGLDHCPGLQKG 174
BLAST of Abu1g_004420.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:12315016-12316659 REVERSE LENGTH=264) HSP 1 Score: 97.8265 bits (242), Expect = 3.795e-25 Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 0 Query: 25 YFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKGKT 169
+ TI A+PR +G +SA++R GR+P+++F Q+ D + K+++S + QI ++ + FF S F +++RA GS +++ + LP +H T LN+ F+ A G LKVD+P+VF G + PGLKKG +
Sbjct: 50 HAETILAVPRSVSGKSISAKERKAGRVPSIIFEQE------DGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAEIGSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSPGLKKGAS 188
BLAST of Abu1g_004420.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:12315016-12316659 REVERSE LENGTH=277) HSP 1 Score: 93.9745 bits (232), Expect = 1.501e-23 Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 0 Query: 25 YFHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDKNTDRRSPSRKQILSTERKQIYSILKSVKLPFFCSTTFPLQIRAGSGSSVLLDSGKVLP-------------IKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVENCPGLKKGKT 169
+ TI A+PR +G +SA++R GR+P+++F Q+ D + K+++S + QI ++ + FF S F +++RA GS +++ + LP IK+H T LN+ F+ A G LKVD+P+VF G + PGLKKG +
Sbjct: 50 HAETILAVPRSVSGKSISAKERKAGRVPSIIFEQE------DGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAEIGSDEVIEKVRALPRAVKSPFLSLMKLIKIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSPGLKKGAS 201 The following BLAST results are available for this feature:
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Atalantia buxifolia cv. HKC v2.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Abu1g_004420.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Atalantia buxifolia cv. HKC v2.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Abu1g_004420.3 vs. Araport11
Analysis Date: 2024-01-19 (Blastp of Citrus australasica CRC3672 v1.0 proteins vs Araport11 ) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Atalantia buxifolia cv. HKC v2.0 proteins
Date Performed: 2024-01-27 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Abu1g_004420.3-hkc_v2 ID=Abu1g_004420.3-hkc_v2; Name=Abu1g_004420.3; organism=Atalantia buxifolia; type=mRNA; length=513bpback to top protein sequence of Abu1g_004420.3-hkc_v2 >Abu1g_004420.3-hkc_v2 ID=Abu1g_004420.3-hkc_v2; Name=Abu1g_004420.3-hkc_v2; organism=Atalantia buxifolia; type=polypeptide; length=171bpback to top mRNA from alignment at chr1:3978217..3980314+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2098bp; location=Sequence derived from: chr1:3978217..3980314+ (Atalantia buxifoliaback to top Coding sequence (CDS) from alignment at chr1:3978217..3980314+ >Abu1g_004420.3-hkc_v2 ID=Abu1g_004420.3-hkc_v2; Name=Abu1g_004420.3; organism=Atalantia buxifolia; type=CDS; length=513bp; location=Sequence derived from: chr1:3978217..3980314+ (Atalantia buxifoliaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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