Abu1g_005540.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: A0A2H5PD31|A0A2H5PD31_CITUN (SMP domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_125330 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.114e-41 Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 MNTQINREVEA+ APGTVETTIVDTKDYRSPAGQ+QD EPRNVQVIHH YP GNP TSGGLLADAAAAVATTLQSARDAISRK Sbjct: 1 MNTQINREVEAMRAPGTVETTIVDTKDYRSPAGQKQDEEPRNVQVIHHTYPHGNPTTSGGLLADAAAAVATTLQSARDAISRK 83
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: V4SF86|V4SF86_CITCL (SMP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10027375mg PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.114e-41 Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 MNTQINREVEA+ APGTVETTIVDTKDYRSPAGQ+QD EPRNVQVIHH YP GNP TSGGLLADAAAAVATTLQSARDAISRK Sbjct: 1 MNTQINREVEAMRAPGTVETTIVDTKDYRSPAGQKQDEEPRNVQVIHHTYPHGNPTTSGGLLADAAAAVATTLQSARDAISRK 83
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: A0A067GHF5|A0A067GHF5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039666mg PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.075e-33 Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 0 Query: 14 APGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 APGTVETTIVDTKDYRSPAGQ+QD EPRNVQVIHH YP GNP TSGGLLADAAAAVATTLQSARDAISRK Sbjct: 3 APGTVETTIVDTKDYRSPAGQKQDEEPRNVQVIHHTYPHGNPTTSGGLLADAAAAVATTLQSARDAISRK 72
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: A0A5C7HQS8|A0A5C7HQS8_9ROSI (SMP domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013943 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 5.080e-19 Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 MN Q +E E+V G +E +V+T DYRS AGQ Q++ R V+VIH ++P NP TSGGLLA+AAAAV +TLQSA++AIS K Sbjct: 1 MNIQARKETESVNEQGGIERRVVETTDYRSSAGQAQEL--RTVEVIHQSHPNTNPNTSGGLLAEAAAAVESTLQSAKEAISGK 81
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: B9SG02|B9SG02_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1153490 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-17 Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYP-QGNPKTSGGLLADAAAAVATTLQSARDAISR 82 MN+Q+ +E A G VE I +T DYRS AGQ Q E RNVQVIH + P + TSGG+L++AAA+VA+TLQSA++AISR Sbjct: 1 MNSQVRKETVTTNAQGDVEKRI-ETIDYRSSAGQGQ--EMRNVQVIHQSNPNKEKSNTSGGVLSNAAASVASTLQSAKEAISR 80
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: A0A061DI62|A0A061DI62_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000692 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.831e-16 Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 MNTQ +E E A G VE V+T DY S AG+ ++V + VQVIH YP N KT G +L AAAAVA+TL+SA+DAISRK Sbjct: 1 MNTQARKESEITNAQGEVERK-VETVDYCSSAGKGKEV--KTVQVIHQ-YPGSNQKTGGVVLTGAAAAVASTLESAKDAISRK 79
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: A0A2C9US79|A0A2C9US79_MANES (SMP domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G118700 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.744e-15 Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPA-GQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISR 82 MN Q+ RE E + G V D RS A GQ Q++ RNVQV H +P+ N KTSGG+L++AAA++A+TL+SARDAI R Sbjct: 1 MNAQVIRETETIDGQGNV--------DCRSSAAGQCQEI--RNVQVTHQPHPKENSKTSGGVLSNAAASIASTLESARDAIIR 73
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: A0A6P5ZH78|A0A6P5ZH78_DURZI (Uncharacterized protein LOC111300735 OS=Durio zibethinus OX=66656 GN=LOC111300735 PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.225e-15 Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 MN Q + E A G VE V+T D+RS AG+ Q EP++VQVIH + Q N T GG+L AAAAV +TL+SA+DAISRK Sbjct: 1 MNMQSKKGSETTNAQGEVERK-VETLDHRSSAGKGQ--EPKSVQVIHQ-HLQSNQNTRGGVLTGAAAAVVSTLESAKDAISRK 79
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: G7K589|G7K589_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11406278 PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.936e-15 Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 MN Q E A+ ++E V+T D+RS AGQ Q E RNVQVIH Q + KTSGG+L AAAA+A+TLQSA+DAIS+K Sbjct: 1 MNEQAKNE--AMNVRSSIEKK-VETVDHRSSAGQGQGQEERNVQVIH----QPHSKTSGGVLTGAAAAMASTLQSAKDAISKK 76
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Match: A0A6P6TKV7|A0A6P6TKV7_COFAR (Uncharacterized protein LOC113701951 OS=Coffea arabica OX=13443 GN=LOC113701951 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.715e-15 Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 0 Query: 1 MNTQINREVEAVPAPGTVETTIVDTKDYRSPAGQQQDVEPRNVQVIH-HAYPQGNPKTSGGLLADAAAAVATTLQSARDAISRK 83 MN NRE AV A G VE VD+ DYRS AG D +P VQVIH H + KTSGG+LA+AAA++A+TL+SA++AISRK Sbjct: 58 MNPSANRETGAVNAQGQVERR-VDSTDYRSSAGGGLDQKP--VQVIHQHHDSSPDSKTSGGVLANAAASIASTLESAKEAISRK 138
BLAST of Abu1g_005540.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:26839469-26839836 REVERSE LENGTH=78) HSP 1 Score: 61.2326 bits (147), Expect = 5.332e-14 Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 0 Query: 1 MNTQINREVEAVPAP--GTVETTIVDTKDYRSPAGQQQDVEPRNVQVIHHAYPQGNPKTSGGLLADAAAAVATTLQSARDAISR 82 MN + +E+E G+ +V+T + RS AG+ E RNVQV+H Q +PKTSG +L AAAAV +TLQSA++ IS+ Sbjct: 1 MNLKSTKEMETEKRKEDGSSSKVVVETTEQRSSAGK--GTEQRNVQVVH----QSHPKTSGDVLVGAAAAVESTLQSAKEVISK 78 The following BLAST results are available for this feature:
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Atalantia buxifolia cv. HKC v2.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Abu1g_005540.1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Atalantia buxifolia cv. HKC v2.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Abu1g_005540.1 vs. Araport11
Analysis Date: 2024-01-19 (Blastp of Citrus australasica CRC3672 v1.0 proteins vs Araport11 ) Total hits: 1 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Abu1g_005540.1-hkc_v2 ID=Abu1g_005540.1-hkc_v2; Name=Abu1g_005540.1; organism=Atalantia buxifolia; type=mRNA; length=252bpback to top protein sequence of Abu1g_005540.1-hkc_v2 >Abu1g_005540.1-hkc_v2 ID=Abu1g_005540.1-hkc_v2; Name=Abu1g_005540.1-hkc_v2; organism=Atalantia buxifolia; type=polypeptide; length=84bpback to top mRNA from alignment at chr1:4950379..4951000- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=622bp; location=Sequence derived from: chr1:4950379..4951000- (Atalantia buxifoliaback to top Coding sequence (CDS) from alignment at chr1:4950379..4951000- >Abu1g_005540.1-hkc_v2 ID=Abu1g_005540.1-hkc_v2; Name=Abu1g_005540.1; organism=Atalantia buxifolia; type=CDS; length=252bp; location=Sequence derived from: chr1:4950379..4951000- (Atalantia buxifoliaback to top |