CMJ_chr2_000500.3
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A067GIN0|A0A067GIN0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043718mg PE=4 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 4.859e-114 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 172 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII Sbjct: 57 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 228
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: V4UG70|V4UG70_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017543mg PE=4 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 4.020e-111 Identity = 171/177 (96.61%), Postives = 171/177 (96.61%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKP-----KVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 172 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEP PEKGKEKDQPEKKKEPKDTPKP KVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII Sbjct: 57 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPVPEKGKEKDQPEKKKEPKDTPKPETDKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 233
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A2H5N621|A0A2H5N621_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_016140 PE=4 SV=1) HSP 1 Score: 324.709 bits (831), Expect = 7.591e-111 Identity = 171/177 (96.61%), Postives = 171/177 (96.61%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKP-----KVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 172 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKE KDTPKP KVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII Sbjct: 57 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEAKDTPKPETDKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 233
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A540MUL4|A0A540MUL4_MALBA (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_011903 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.100e-28 Identity = 80/178 (44.94%), Postives = 102/178 (57.30%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKD--QPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRY---GPPPKIWYDGYYGRPVYDSWGGSSK-YYGYRSDCLSEENPSACAII 172 +RDKICCKG IKSIEIK P+ K + P D +P+ K+ + + + +E KPK ++GK KD +P+ +PKD PK D +PKV PG P C +CY GH GG CH G P I YDGYYGRPVYDS+GG ++ Y R DC SEENPSAC ++ Sbjct: 59 IRDKICCKGGSAIKSIEIKEPE----KPKAPKDDGKPKAPKDDGKPKSDGKPKDEGKPKADSKPKDEGKPKDDGKPKGDGKPKDDSTPKDDGKPKVGLLNPG---PSSHVQAYCMDCYQGHAGGSCHSGYSGGLAPYIQYDGYYGRPVYDSYGGGNRGYCVTRPDCFSEENPSACTVM 229
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A5N5H9Z2|A0A5N5H9Z2_9ROSA (Chitin-binding lectin 1-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039930 PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.847e-21 Identity = 72/176 (40.91%), Postives = 96/176 (54.55%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHRY---GPPPKIWYDGYYGRPVYDSWGGSSK-YYGYRSDCLSEENPSACAII 172 +RDKICCKG IKSIEIK + +KK + +K+ KK + + + +K ++ PK + GK+KD+ KK + K D PG+ P CC +CY GH GGPC+ GP P I YDGYYGRPVYDS+GG S Y R + +EENPSAC ++ Sbjct: 59 IRDKICCKGGSAIKSIEIK----ELEKKTDDGKQKDDGKKNDDGKKKDDGKKKDDGNPK------DDGKKKDEVNKKDDSKSK-----------DHVVPGHSLHVRP---CCMDCYQGHAGGPCYNGYGGGPAPYIQYDGYYGRPVYDSYGGGSMGYCVTRPEYFNEENPSACTVM 210
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A6P5TY27|A0A6P5TY27_PRUAV (uncharacterized protein LOC110771668 OS=Prunus avium OX=42229 GN=LOC110771668 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.945e-20 Identity = 72/178 (40.45%), Postives = 84/178 (47.19%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHR--YGPPPKIWYDGYYGRPVYDSWGG----SSKYYGYRSDCLSEENPSACAII 172 +RD+ICCKG G IKSIEIK P K E A EK K P +K K AE+ P + P K P G+PP CC +CY GH GGPC G P I YDGYYGRPVYDS+GG ++ Y RSDC SEENP C ++ Sbjct: 39 IRDRICCKGGGAIKSIEIKEPGKPKPASTEKAKPASTEKAKP-PAEDKTKPTAEDKPPPAPDNPPAKSGP------------------------GPVHVGFPP--VNVNACCMDCYHGHPGGPCQTGYGGVGPYIQYDGYYGRPVYDSYGGGRSYNTNYCVARSDCFSEENPQGCTVM 189
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A2P6SF90|A0A2P6SF90_ROSCH (Putative heavy metal-associated domain, HMA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0347291 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.787e-20 Identity = 79/180 (43.89%), Postives = 95/180 (52.78%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPC---HRYGPPPK-IWYDGYYGRPVYDSWGG----SSKYYGYRSDCLSEENPSACAII 172 +RDK+CCKG G IKSIEIK EPEK K+ P KE + SK K KE P+ G++ PKD KPK + +PK +P CC +CYGG GGPC + YG I YDGYYGRPVYDS+GG ++ Y R DC SEENP ACAI+ Sbjct: 50 IRDKLCCKGGGAIKSIEIK----------------EPEKLKDKP-----KEAKDVSKEKPKEDKPKDGQK---------PKDESKPKDESKPK-NP--------------CCMDCYGGRPGGPCETGYGYGRLALYIQYDGYYGRPVYDSYGGGRSYTTSYCVTRPDCFSEENPQACAIM 184
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A2P6SAW0|A0A2P6SAW0_ROSCH (Putative heavy metal-associated domain, HMA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0328811 PE=4 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.081e-20 Identity = 83/212 (39.15%), Postives = 106/212 (50.00%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKG-KEKDQPEKKKEPKDTPKPK-VDP----------------QPKVDPPAP-------GYP-------PPYYPFGVCCPECYGGHGGGPC---HRYGPPPK-IWYDGYYGRPVYDSWGG----SSKYYGYRSDCLSEENPSACAII 172 +RDK+CCKG G IKSIEIK P+ K + P+ +K K+T + K + SK K KE PE G K KD+ ++K+ P P+ V+P P P P G P PP P CC +CY G GGPC + YG + YDGYYGRPV+DS+GG ++ Y R DC SEENP ACAI+ Sbjct: 99 IRDKLCCKGGGAIKSIEIKEPE----KLKPPSTG---DKSKQTQAAGETKGAKDASKEKQKEDKPEDGEKPKDESKQKRAPVTACTPRPVNPCCMDCYGGRPGGPCETHPPRRPVNPCCMDCYEGRPSGPCETRPPRRPVNPCCMDCYEGRPGGPCETGYGYGRLALYMQYDGYYGRPVHDSYGGGRSYTTSYCVTRPDCFSEENPQACAIM 303
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A5N5HAV6|A0A5N5HAV6_9ROSA (Chitin-binding lectin 1-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039926 PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.148e-18 Identity = 71/175 (40.57%), Postives = 87/175 (49.71%), Query Frame = 0 Query: 1 MRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPKDTPKPKVDPQPKVDPPAPGYPPPYYPFGVCCPECYGGHGGGPCHR---YGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 172 +RDKICCKG IKSIEI KEPEK K PQ EK KE + + + + + + +K + P + P P YPP P CC +CY GH GGPC+ GPPP I YDGYYGRPVYDS+GG S+ Y EENPS C ++ Sbjct: 59 IRDKICCKGGCAIKSIEI----------------KEPEKPKP-PQVEKPKEPEKPKPDEKPKEPEKPKEPEKPKPAEKPKEPEKPKPCPPPVHLVPCVPWYPP---PVRTCCTDCYHGHAGGPCYSGYGRGPPPCIQYDGYYGRPVYDSYGGCSRGY-------CEENPSVCTVM 206
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Match: A0A2P5ANL9|A0A2P5ANL9_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_314970 PE=4 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.951e-18 Identity = 48/78 (61.54%), Postives = 52/78 (66.67%), Query Frame = 0 Query: 98 APGYPPPYYP-FGVCCPECYGGHGGGPCH--RYGPPPKIWYDGYYGRPVYDSWGGSSKYYGYRSDCLSEENPSACAII 172 GYPP YP FG CC ECYGGHGG PC+ GP P YDGYYGRPVYDS+GG YY R D SEEN AC+I+ Sbjct: 54 VAGYPPLAYPSFGTCCLECYGGHGGRPCYSGHGGPSPCYQYDGYYGRPVYDSYGGGRAYYVNRCDYFSEENSGACSIM 131 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_000500.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_000500.3_cmj_v1 ID=CMJ_chr2_000500.3_cmj_v1; Name=CMJ_chr2_000500.3; organism=Citrus maxima; type=mRNA; length=519bpback to top protein sequence of CMJ_chr2_000500.3_cmj_v1 >CMJ_chr2_000500.3_cmj_v1 ID=CMJ_chr2_000500.3_cmj_v1; Name=CMJ_chr2_000500.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=173bpback to top mRNA from alignment at chr2:296584..298381+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1798bp; location=Sequence derived from: chr2:296584..298381+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:296584..298381+ >CMJ_chr2_000500.3_cmj_v1 ID=CMJ_chr2_000500.3_cmj_v1; Name=CMJ_chr2_000500.3; organism=Citrus maxima; type=CDS; length=519bp; location=Sequence derived from: chr2:296584..298381+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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