CMJ_chr2_000960.4
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A067GSW9|A0A067GSW9_CITSI (Transcription initiation factor IIF subunit alpha OS=Citrus sinensis OX=2711 GN=CISIN_1g008099mg PE=3 SV=1) HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0 Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK Sbjct: 119 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: V4UFW2|V4UFW2_CITCL (Transcription initiation factor IIF subunit alpha OS=Citrus clementina OX=85681 GN=CICLE_v10014841mg PE=3 SV=1) HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0 Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK Sbjct: 119 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 538
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: V4UL72|V4UL72_CITCL (Transcription initiation factor IIF subunit alpha OS=Citrus clementina OX=85681 GN=CICLE_v10014841mg PE=3 SV=1) HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0 Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK Sbjct: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A067GFM7|A0A067GFM7_CITSI (Transcription initiation factor IIF subunit alpha OS=Citrus sinensis OX=2711 GN=CISIN_1g008099mg PE=3 SV=1) HSP 1 Score: 839.721 bits (2168), Expect = 0.000e+0 Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK Sbjct: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A067GFE3|A0A067GFE3_CITSI (Transcription initiation factor IIF subunit alpha OS=Citrus sinensis OX=2711 GN=CISIN_1g008099mg PE=3 SV=1) HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0 Identity = 420/459 (91.50%), Postives = 420/459 (91.50%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTE---------------------------------------DRTAFADILKRISKIQKTNGPSNYVVLREK 420 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTE DRTAFADILKRISKIQKTNGPSNYVVLREK Sbjct: 119 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEGFGSLSCSTLSMFGKSYEMPAWMGIPDVAFLSLKLLLMQDRTAFADILKRISKIQKTNGPSNYVVLREK 577
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A2H5N517|A0A2H5N517_CITUN (Transcription initiation factor IIF subunit alpha OS=Citrus unshiu OX=55188 GN=CUMW_015650 PE=3 SV=1) HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0 Identity = 420/463 (90.71%), Postives = 420/463 (90.71%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWY----------------NFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTE---------------------------DRTAFADILKRISKIQKTNGPSNYVVLREK 420 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWY NFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTE DRTAFADILKRISKIQKTNGPSNYVVLREK Sbjct: 119 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYASPILLLGDTWCLLMYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEGFRSLSCSTLSMFGKSYEMPAWMGILDDRTAFADILKRISKIQKTNGPSNYVVLREK 581
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A067GSX5|A0A067GSX5_CITSI (Transcription initiation factor IIF subunit alpha OS=Citrus sinensis OX=2711 GN=CISIN_1g008099mg PE=3 SV=1) HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0 Identity = 391/402 (97.26%), Postives = 393/402 (97.76%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRI 402 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTE ++ I Sbjct: 119 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEVCPCLTVLIFII 520
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A067GSL0|A0A067GSL0_CITSI (Transcription initiation factor IIF subunit alpha OS=Citrus sinensis OX=2711 GN=CISIN_1g008099mg PE=3 SV=1) HSP 1 Score: 645.966 bits (1665), Expect = 0.000e+0 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTEN 321 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTEN Sbjct: 119 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTEN 439
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A1R3I2S2|A0A1R3I2S2_COCAP (Transcription initiation factor IIF subunit alpha OS=Corchorus capsularis OX=210143 GN=CCACVL1_15308 PE=3 SV=1) HSP 1 Score: 565.844 bits (1457), Expect = 0.000e+0 Identity = 331/435 (76.09%), Postives = 371/435 (85.29%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIK-QDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGASSSR--------------TGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 MLEDETGQ QY GHLEGSQSATYYLL+M KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGYERWMMKAANNG AAFGEVEK DDKES+ GGRGR K SGD+DEG+VSD+GEEDE+EEA RKNRLGLNK+ DDDEEGPRGGD D DD EKGDDWEHEEIFTDDDEAVGNDPEER DLAPEVPAPPEIK ++E+EDEE+EGGLSKSGKELKKLLG+A+GLN+SDA+DDDD+DD+ +D++ F+P+LAPK + KEEP DNSPAKPAPS S R TP+TSKSAKGKRK+NGDD +A +G PLKKVK+E ETKSS + E+ SASK SA AKG SS++ GS S +GPVT +EIRAVLLQ+APVTT DLVAKFK RL+S ED+ AFADIL+RISKIQKTNGPSNYVVLR+K Sbjct: 119 MLEDETGQFQYHGHLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAANNGPAAFGEVEKFDDKESSAAGGRGRKKTSGDDDEGHVSDKGEEDEEEEAARKNRLGLNKKSGDDDEEGPRGGDSD---DDSEKGDDWEHEEIFTDDDEAVGNDPEER-DLAPEVPAPPEIKEDEDEEEDEEQEGGLSKSGKELKKLLGKASGLNDSDADDDDDDDDEADDDMNFNPVLAPKKEP---KEEPVDNSPAKPAPSASARGTPTTSKSAKGKRKANGDDNKASNGTPLKKVKSETETKSSVKVESASASKGSAAAKGTSSTKAGSTSGAGTSSSSKAGSASTAGPVTEDEIRAVLLQKAPVTTSDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPSNYVVLRDK 546
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Match: A0A4U5Q636|A0A4U5Q636_POPAL (Transcription initiation factor IIF subunit alpha OS=Populus alba OX=43335 GN=D5086_0000130750 PE=3 SV=1) HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0 Identity = 327/424 (77.12%), Postives = 367/424 (86.56%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGR-GRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQ-DEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSA-PAKGASSSRTGSTSA-SGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 +LEDETGQ QYQGHLEGSQSATYYLL+M KEFVAIPAGSWYNFNKVA YKQLTLEEAEEKMKNRRKTADGYERWMMKAA+NGAAAFGEVEKPDDK+ GGR GR K +GD+DEGNVSD+GEEDE+EEA RK+RLGLNK G DDDEEGPRGGDLD+D+DD+EKGDDWEHEEIFTDDDEAV DPEEREDLAPEVPAPPEIKQ +E++++E EEGGLSKSGKELKKLLG+ANGLNESDAEDDDD+DD +D SP+LAPK KD KEEPADNSPAKP P GS + TPSTSKSAKGKRK N DDA+ +GAP+KKVKTENE K + ++E+ A+K +A P SSS+TG TS +GPVT EEIRAVLLQ PVTTQDLVA+FK RLR+ ED+ AFADIL+RISKIQKT+G SN+VVLR+K Sbjct: 119 LLEDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVAIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLGKANGLNESDAEDDDDDDDMDDD---ISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRKLNADDAKTSNGAPVKKVKTENEVKPTVKEESSPATKGTATPKPMPSSSKTGPTSGPTGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSG-SNFVVLRDK 538
BLAST of CMJ_chr2_000960.4 vs. ExPASy Swiss-Prot
Match: T2FA_ARATH (Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana OX=3702 GN=RAP74 PE=1 SV=1) HSP 1 Score: 463.381 bits (1191), Expect = 5.720e-158 Identity = 292/431 (67.75%), Postives = 347/431 (80.51%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEV--EKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKR-GEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEERED-LAPEVPAPPEIKQ-DEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENV-SASKSSAPAKGASS-----SRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 +LEDETGQ QYQGHLEGSQSATYYLLVM +KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGY+RWMMKAANNG A FGEV EK S G G + GDE+EGNVSDRG+EDE+EEA RK+RLGLN++ +DDDEEGPRGGDLD+D+DD+EKGDDWEHEEIFTDDDEAVGNDPEERED LAPE+PAPPEIKQ ++++E+EEEEGGLSKSGKELKKLLG+ANGL+ESD +DDDD DD+ E G + K K+ KEEP DN+PAKPAPSG R TP +K +KGKRK N D++ PS + KKVKTEN+ KSS ++E + SKS+ P K + + S++A+GPVT +EIRAVL+++ VTTQDLV++FK RL++ ED+ AFA+IL++ISKIQK G N+VVLREK Sbjct: 117 ILEDETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYG--TVTNSKQKEAA-KEEPVDNAPAKPAPSGPPRGTPP-AKPSKGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLREK 543 HSP 2 Score: 64.3142 bits (155), Expect = 7.921e-10 Identity = 29/60 (48.33%), Postives = 45/60 (75.00%), Query Frame = 0 Query: 358 VTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVL 417 VT +EIR VL+++ +TT +LV +FK RL +TED+ +F+ ILK+I+K+QK G +VV+ Sbjct: 572 VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKIAKLQKNPGSEKFVVV 631
BLAST of CMJ_chr2_000960.4 vs. Araport11
Match: AT4G12610.1 (| transcription initiation factor IIF subunit alpha RAP74 | Chr4:7454970-7457465 FORWARD LENGTH=543 | 201606) HSP 1 Score: 461.455 bits (1186), Expect = 1.346e-159 Identity = 292/431 (67.75%), Postives = 347/431 (80.51%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEV--EKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKR-GEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEERED-LAPEVPAPPEIKQ-DEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENV-SASKSSAPAKGASS-----SRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 +LEDETGQ QYQGHLEGSQSATYYLLVM +KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGY+RWMMKAANNG A FGEV EK S G G + GDE+EGNVSDRG+EDE+EEA RK+RLGLN++ +DDDEEGPRGGDLD+D+DD+EKGDDWEHEEIFTDDDEAVGNDPEERED LAPE+PAPPEIKQ ++++E+EEEEGGLSKSGKELKKLLG+ANGL+ESD +DDDD DD+ E G + K K+ KEEP DN+PAKPAPSG R TP +K +KGKRK N D++ PS + KKVKTEN+ KSS ++E + SKS+ P K + + S++A+GPVT +EIRAVL+++ VTTQDLV++FK RL++ ED+ AFA+IL++ISKIQK G N+VVLREK Sbjct: 117 ILEDETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYG--TVTNSKQKEAA-KEEPVDNAPAKPAPSGPPRGTPP-AKPSKGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLREK 543
BLAST of CMJ_chr2_000960.4 vs. Araport11
Match: AT4G12610.2 (| transcription initiation factor IIF subunit alpha RAP74 | Chr4:7454970-7458318 FORWARD LENGTH=649 | 201606) HSP 1 Score: 463.381 bits (1191), Expect = 5.852e-159 Identity = 292/431 (67.75%), Postives = 347/431 (80.51%), Query Frame = 0 Query: 1 MLEDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEV--EKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKR-GEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEERED-LAPEVPAPPEIKQ-DEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENV-SASKSSAPAKGASS-----SRTGSTSASGPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVLREK 420 +LEDETGQ QYQGHLEGSQSATYYLLVM +KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGY+RWMMKAANNG A FGEV EK S G G + GDE+EGNVSDRG+EDE+EEA RK+RLGLN++ +DDDEEGPRGGDLD+D+DD+EKGDDWEHEEIFTDDDEAVGNDPEERED LAPE+PAPPEIKQ ++++E+EEEEGGLSKSGKELKKLLG+ANGL+ESD +DDDD DD+ E G + K K+ KEEP DN+PAKPAPSG R TP +K +KGKRK N D++ PS + KKVKTEN+ KSS ++E + SKS+ P K + + S++A+GPVT +EIRAVL+++ VTTQDLV++FK RL++ ED+ AFA+IL++ISKIQK G N+VVLREK Sbjct: 117 ILEDETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYG--TVTNSKQKEAA-KEEPVDNAPAKPAPSGPPRGTPP-AKPSKGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLREK 543 HSP 2 Score: 64.3142 bits (155), Expect = 8.104e-11 Identity = 29/60 (48.33%), Postives = 45/60 (75.00%), Query Frame = 0 Query: 358 VTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVVL 417 VT +EIR VL+++ +TT +LV +FK RL +TED+ +F+ ILK+I+K+QK G +VV+ Sbjct: 572 VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKIAKLQKNPGSEKFVVV 631 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_000960.4 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_000960.4 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_000960.4 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_000960.4_cmj_v1 ID=CMJ_chr2_000960.4_cmj_v1; Name=CMJ_chr2_000960.4; organism=Citrus maxima; type=mRNA; length=1263bpback to top protein sequence of CMJ_chr2_000960.4_cmj_v1 >CMJ_chr2_000960.4_cmj_v1 ID=CMJ_chr2_000960.4_cmj_v1; Name=CMJ_chr2_000960.4_cmj_v1; organism=Citrus maxima; type=polypeptide; length=421bpback to top mRNA from alignment at chr2:536291..552657+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=16367bp; location=Sequence derived from: chr2:536291..552657+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:536291..552657+ >CMJ_chr2_000960.4_cmj_v1 ID=CMJ_chr2_000960.4_cmj_v1; Name=CMJ_chr2_000960.4; organism=Citrus maxima; type=CDS; length=1263bp; location=Sequence derived from: chr2:536291..552657+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|