CMJ_chr2_002230.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr2_002230.1
Unique Name	CMJ_chr2_002230.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	492

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL064	Citrus australis genome v1.0 (UQ)	Citrus australis
cmjdvaR089	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjfhsR131	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjfhsR164	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjcmjR074	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjzkR140	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL128	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL293	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR191	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR213	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0221	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0272	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0304	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0394	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL052	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL398	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR109	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cizcmjL186	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL409	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR134	Citrus maxima cv. XGF genome v1.0	Citrus maxima
caacmjL386	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcmjL580	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
cmjmpjR131	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cigcmjL000	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL083	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
clxcmjL224	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcraR160	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR182	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL059	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL107	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL236	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL360	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL607	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL107	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL244	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL489	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL627	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL115	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL477	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcumR153	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrmR156	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR177	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR159	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR195	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Cic285490.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
g7739.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
Chh217670.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
g6876.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
LW297660.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cmt161030.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr2_002230	CMJ_chr2_002230_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_002230.1.exon1	CMJ_chr2_002230.1.exon1_cmj_v1	Citrus maxima	exon
CMJ_chr2_002230.1.exon2	CMJ_chr2_002230.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr2_002230.1.exon3	CMJ_chr2_002230.1.exon3_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_002230.1.cds.1	CMJ_chr2_002230.1.cds.1_cmj_v1	Citrus maxima	CDS
CMJ_chr2_002230.1.cds.2	CMJ_chr2_002230.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr2_002230.1.cds.3	CMJ_chr2_002230.1.cds.3_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_002230.1_cmj_v1	CMJ_chr2_002230.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr2_002230.1_cmj_v1	CMJ_chr2_002230.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL
Match: A0A2H5P988|A0A2H5P988_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_115400 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.577e-12
Identity = 45/116 (38.79%), Postives = 57/116 (49.14%), Query Frame = 0

Query:   30 VGVACGLVEEIDDDDMELSPAAKIATLVYGLTSHEQGLLHGIDGSRVMATAVGQRRRWPKGQRRRVSCCETKVMLLGKYLVVDGANSEAAVNEVGCQREEGTPAMAKHHHQLLVEP 145
            VG A GL + +DD+DME SP+ +I T+  G+TSH QG               G   RW KG                        +S+AAVN VG + EEGTPA+AKHHH   +EP
Sbjct:   22 VGAALGLFDGMDDNDMEPSPSVEIVTMACGVTSHGQGFCDLCAVWFWDVRGCGMVLRWLKGD----------------------VDSKAAVNGVGRRCEEGTPALAKHHHHPPMEP 115

[Close]

BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL
Match: A0A067D546|A0A067D546_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038942mg PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.634e-11
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 0

Query:   30 VGVACGLVEEIDDDDMELSPAAKIATLVYGLTSHEQGLLHGIDGSRVMATAVGQRRRWPKGQRRRVSCCETKVMLLGKYLVVDGANSEAAVNEVGCQREEGTPAMAKHHHQLLVEP 145
            VG A GL + +DD+DME SP+A+I  +  G+TS EQG               G   RW KG                        +S+AAVN  G + EEGTPA+AKHHH   +EP
Sbjct:   22 VGAALGLFDGMDDNDMEPSPSAEIVAMACGVTSREQGFCDLCAVWFWDVRGCGVVSRWLKGN----------------------VDSKAAVNGAGRRCEEGTPALAKHHHHPPMEP 115

The following BLAST results are available for this feature:

BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A2H5P988\|A0A2H5P988_CITUN	2.577e-12	38.79	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A067D546\|A0A067D546_CITSI	1.634e-11	37.93	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]

BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr2_002230.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1276976..1277580+
coding sequence from alignment at chr2:1276976..1277580+

mRNA sequence

>CMJ_chr2_002230.1_cmj_v1 ID=CMJ_chr2_002230.1_cmj_v1; Name=CMJ_chr2_002230.1; organism=Citrus maxima; type=mRNA; length=492bp
ATGCTTGATGGTGTGTTGGGTATAAAGAGGATTTCGTTGGCAGTGAAACT
CAATCAACGGCCTCAAAATGAAAATGATGTTATTGAGGTTGGGGTTGCAT
GTGGATTGGTTGAGGAGATAGACGACGATGATATGGAACTATCACCGGCG
GCAAAAATTGCAACATTGGTTTATGGACTCACAAGCCACGAGCAAGGGTT
GCTACATGGTATCGATGGCTCAAGGGTGATGGCAACGGCAGTTGGGCAGC
GTCGGCGATGGCCAAAGGGGCAGCGGCGACGTGTTAGTTGTTGTGAGACA
AAAGTCATGCTCTTGGGTAAATACTTGGTGGTGGATGGAGCTAATTCAGA
GGCGGCTGTGAATGAGGTTGGTTGCCAGCGTGAAGAGGGTACTCCGGCAA
TGGCAAAGCACCACCACCAGCTGCTGGTGGAGCCGTGGCCGACTGGTCAA
GGCTGGGTTAAAAGCAAGCAAGTTGGTCAAATTTTTTATTGA

protein sequence of CMJ_chr2_002230.1_cmj_v1

>CMJ_chr2_002230.1_cmj_v1 ID=CMJ_chr2_002230.1_cmj_v1; Name=CMJ_chr2_002230.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=164bp
MLDGVLGIKRISLAVKLNQRPQNENDVIEVGVACGLVEEIDDDDMELSPA
AKIATLVYGLTSHEQGLLHGIDGSRVMATAVGQRRRWPKGQRRRVSCCET
KVMLLGKYLVVDGANSEAAVNEVGCQREEGTPAMAKHHHQLLVEPWPTGQ
GWVKSKQVGQIFY*

mRNA from alignment at chr2:1276976..1277580+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=605bp; location=Sequence derived from: chr2:1276976..1277580+ (Citrus maxima
ATGCTTGATGGTGTGTTGGGTATAAAGAGGATTTCGTTGGCAGTGAAACT
CAATCAACGGCCTCAAAATGAAAATGGTTGTTGATGCTTGATGCTTGAAA
GTGGCCGCAATTGCAGATTGAAAAAAATTTGTGCGTTTATGGTTGTTAAG
ATGTTATTGAGGTTGGGGTTGCATGTGGATTGGTTGAGGAGATAGACGAC
GATGATATGGAACTATCACCGGCGGCAAAAATTGCAACATTGGTTTATGG
ACTCACAAGCCACGAGCAAGGGTTTTGAGAGATTGTGCAGTTGGGTTTTG
GGACTCAAAGGTTGCTACATGGTATCGATGGCTCAAGGGTGATGGCAACG
GCAGTTGGGCAGCGTCGGCGATGGCCAAAGGGGCAGCGGCGACGTGTTAG
TTGTTGTGAGACAAAAGTCATGCTCTTGGGTAAATACTTGGTGGTGGATG
GAGCTAATTCAGAGGCGGCTGTGAATGAGGTTGGTTGCCAGCGTGAAGAG
GGTACTCCGGCAATGGCAAAGCACCACCACCAGCTGCTGGTGGAGCCGTG
GCCGACTGGTCAAGGCTGGGTTAAAAGCAAGCAAGTTGGTCAAATTTTTT
ATTGA

Coding sequence (CDS) from alignment at chr2:1276976..1277580+

>CMJ_chr2_002230.1_cmj_v1 ID=CMJ_chr2_002230.1_cmj_v1; Name=CMJ_chr2_002230.1; organism=Citrus maxima; type=CDS; length=492bp; location=Sequence derived from: chr2:1276976..1277580+ (Citrus maxima
ATGCTTGATGGTGTGTTGGGTATAAAGAGGATTTCGTTGGCAGTGAAACT
CAATCAACGGCCTCAAAATGAAAATGATGTTATTGAGGTTGGGGTTGCAT
GTGGATTGGTTGAGGAGATAGACGACGATGATATGGAACTATCACCGGCG
GCAAAAATTGCAACATTGGTTTATGGACTCACAAGCCACGAGCAAGGGTT
GCTACATGGTATCGATGGCTCAAGGGTGATGGCAACGGCAGTTGGGCAGC
GTCGGCGATGGCCAAAGGGGCAGCGGCGACGTGTTAGTTGTTGTGAGACA
AAAGTCATGCTCTTGGGTAAATACTTGGTGGTGGATGGAGCTAATTCAGA
GGCGGCTGTGAATGAGGTTGGTTGCCAGCGTGAAGAGGGTACTCCGGCAA
TGGCAAAGCACCACCACCAGCTGCTGGTGGAGCCGTGGCCGACTGGTCAA
GGCTGGGTTAAAAGCAAGCAAGTTGGTCAAATTTTTTATTGA