CMJ_chr2_002260.2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A067GEU6|A0A067GEU6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g025311mg PE=4 SV=1) HSP 1 Score: 415.616 bits (1067), Expect = 5.321e-146 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 Query: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR
Sbjct: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A2H5N4F7|A0A2H5N4F7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_014380 PE=4 SV=1) HSP 1 Score: 405.601 bits (1041), Expect = 4.934e-142 Identity = 198/203 (97.54%), Postives = 200/203 (98.52%), Query Frame = 0 Query: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
MGE QDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAP DSFSLKNSGVDAR+LKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVS+AAPSDNNEHEDNGSMLFNMKFVAPGRTSG MDNSEHKRFVR
Sbjct: 1 MGEGQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPCDSFSLKNSGVDARALKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSTAAPSDNNEHEDNGSMLFNMKFVAPGRTSGAMDNSEHKRFVR 203
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: V4TQV1|V4TQV1_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016356mg PE=4 SV=1) HSP 1 Score: 405.216 bits (1040), Expect = 6.634e-142 Identity = 198/203 (97.54%), Postives = 200/203 (98.52%), Query Frame = 0 Query: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
MGE QDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAP DSFSLKNSGVDAR+LKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVS+AAPSDNNEHEDNGSMLFNMKFVAPGRTSG MDNSEHKRFVR
Sbjct: 1 MGEGQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPCDSFSLKNSGVDARALKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSTAAPSDNNEHEDNGSMLFNMKFVAPGRTSGAMDNSEHKRFVR 203
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: V4UA77|V4UA77_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016356mg PE=4 SV=1) HSP 1 Score: 401.749 bits (1031), Expect = 5.278e-141 Identity = 197/202 (97.52%), Postives = 199/202 (98.51%), Query Frame = 0 Query: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFV 202
MGE QDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAP DSFSLKNSGVDAR+LKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVS+AAPSDNNEHEDNGSMLFNMKFVAPGRTSG MDNSEHKRFV
Sbjct: 1 MGEGQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPCDSFSLKNSGVDARALKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVSTAAPSDNNEHEDNGSMLFNMKFVAPGRTSGAMDNSEHKRFV 202
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A6A2ZAE0|A0A6A2ZAE0_HIBSY (DNA replication licensing factor MCM3-like protein 1-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110957pilonHSYRG00036 PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 4.862e-99 Identity = 149/201 (74.13%), Postives = 166/201 (82.59%), Query Frame = 0 Query: 8 EQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKST-ELESQQPHGSDVSSAA----PSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
E+E+KKRVVVESLGWLTESSIMPKK R+IEGVG SSILELKA LY+SQEES+KSKELNGPDVE+ RAKKKIAP D+FS KNSGVDAR++KDKLELKA DGSASYAALEKKA+LY+KL RGELSDEEDKEKYCVDFFRK E ESQQP + A+ D D+G+ LFN KFV PGRT+G +DN EHKRFVR
Sbjct: 3 EEEKKKRVVVESLGWLTESSIMPKKHRAIEGVGASSILELKAHLYKSQEESKKSKELNGPDVEYHRAKKKIAPHDTFSFKNSGVDARAVKDKLELKAVKDGSASYAALEKKAKLYDKLVRGELSDEEDKEKYCVDFFRKGIEEEESQQPQSESCNRASDNLQAGDQGVENDDGASLFNTKFVGPGRTTGIIDNDEHKRFVR 203
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A6A2WB15|A0A6A2WB15_HIBSY (Putative hydrolase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117032pilonHSYRG00122 PE=4 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 8.220e-99 Identity = 152/203 (74.88%), Postives = 166/203 (81.77%), Query Frame = 0 Query: 8 EQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKST-ELESQQP------HGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
++E+KKRVVVESLGWLTESSIMPKK R+IEGVG SSILELKA LY+SQEES+KSKELNGPDVE+ RAKKKIAP D+FS KNSGVDAR+LKDKLELKA DGSASYAALEKKAELY+KL RGELSDEEDKE YCVDFFRK E ESQQP H SD A D D+G+ LFN KFV PGRT+G +DN EHKRFVR
Sbjct: 3 DEEKKKRVVVESLGWLTESSIMPKKHRAIEGVGASSILELKAHLYKSQEESKKSKELNGPDVEYHRAKKKIAPHDTFSFKNSGVDARALKDKLELKAVKDGSASYAALEKKAELYDKLMRGELSDEEDKENYCVDFFRKGIEEEESQQPRFESCNHASDNLQAG--DEGAENDDGASLFNTKFVGPGRTAGIIDNDEHKRFVR 203
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A5C7GSZ1|A0A5C7GSZ1_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027188 PE=4 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 2.871e-97 Identity = 145/198 (73.23%), Postives = 168/198 (84.85%), Query Frame = 0 Query: 7 QEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTEL-ESQQPHGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
+EQERKKRVVVESLGWLTESSIMPKKQRSIEGVG SSILELKAQ+Y+SQEE++KSKEL+G DVEF RAKKK+APRDSFS KNSGVDAR+ KDKLELKA DGS S AALE+KAELY+KL RGELSDEE+ EKYCVDFF+K + E+QQP D S+ P ++ + +++ S FN+KFVAPGRT+G DN EHKRFVR
Sbjct: 3 EEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGPSSILELKAQVYKSQEETKKSKELSGADVEFHRAKKKMAPRDSFSAKNSGVDARAYKDKLELKAVQDGSVSRAALERKAELYDKLVRGELSDEEENEKYCVDFFQKGLDKEETQQPQVRDDSAGVPPEDEDSKNDASTFFNVKFVAPGRTAGAFDNDEHKRFVR 200
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A6P5WW19|A0A6P5WW19_DURZI (uncharacterized protein At4g18257-like OS=Durio zibethinus OX=66656 GN=LOC111278095 PE=4 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 6.144e-96 Identity = 154/207 (74.40%), Postives = 168/207 (81.16%), Query Frame = 0 Query: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTEL-ESQQP---HGSDVSSAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
MGEE ERKKRVVVESLGWLTESSIMPKK R+IEGVG SSILELKAQLY+SQEES+KSKELNG D+E+ RAKKKIA D+FS+KNSGVDAR+LKDKLELKA NDGS SYAALEKKAELY+KL RGELSDEEDKEKYCVDFFRK E ESQ+P H SD A D + + S FNMKFV PGRT+G +DN EHKRFVR
Sbjct: 1 MGEE-----ERKKRVVVESLGWLTESSIMPKKHRNIEGVGASSILELKAQLYKSQEESKKSKELNGSDIEYHRAKKKIARHDAFSVKNSGVDARALKDKLELKAVNDGSVSYAALEKKAELYDKLVRGELSDEEDKEKYCVDFFRKGVEQEESQRPQVDHASDNLQAGDEDGDSDDGPAS--FNMKFVGPGRTAGIIDNDEHKRFVR 200
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A6J1B3W8|A0A6J1B3W8_9ROSI (uncharacterized protein At4g18257-like OS=Herrania umbratica OX=108875 GN=LOC110423953 PE=4 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 1.411e-95 Identity = 153/205 (74.63%), Postives = 167/205 (81.46%), Query Frame = 0 Query: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTEL-ESQQPHGSDVS-SAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
MGEE ERKKRVVVESLGWLTESSIMPKK R+IEGVG SSILELKAQLY+SQEES+KSKEL+GPDVE+ RAK KIAP D+FSLKNSGV+AR+LKDKLELKA NDGS SYAALEKKAELY+KL RGELSDEEDKEKYCVDFFRK + ESQQP S + D + D G LFN KFV PGRT+G +DN EHKRFVR
Sbjct: 1 MGEE-----ERKKRVVVESLGWLTESSIMPKKHRAIEGVGASSILELKAQLYKSQEESKKSKELSGPDVEYHRAKTKIAPHDTFSLKNSGVEARALKDKLELKAVNDGSVSYAALEKKAELYDKLVRGELSDEEDKEKYCVDFFRKGIDQEESQQPQVDRASDNVQAGDEDGGSDGGPSLFNTKFVGPGRTAGIIDNDEHKRFVR 200
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Match: A0A061GD08|A0A061GD08_THECC (Cytochrome b561/ferric reductase transmembrane protein family OS=Theobroma cacao OX=3641 GN=TCM_029509 PE=4 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 7.202e-95 Identity = 152/205 (74.15%), Postives = 166/205 (80.98%), Query Frame = 0 Query: 1 MGEEQDQEQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTEL-ESQQPHGSDVS-SAAPSDNNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
MGEE ERKKRVVVESLGWLTESSIMPKK R+IEGVG SSILELKAQLY+SQEES+KSKEL+GPDVE+ RAK+KIAP D+FSLKNSGV+AR+LKDKLELKA NDGS SYAALEKKAELY+KL RGELSDEEDKEKYCVDFF K E ESQQP S + D + D G LFN FV PGRT+G +DN EHKRFVR
Sbjct: 1 MGEE-----ERKKRVVVESLGWLTESSIMPKKHRAIEGVGASSILELKAQLYKSQEESKKSKELSGPDVEYHRAKRKIAPHDTFSLKNSGVEARALKDKLELKAVNDGSVSYAALEKKAELYDKLVRGELSDEEDKEKYCVDFFTKGVEQEESQQPQVDRASDNVQAGDEDGDSDGGPSLFNTNFVGPGRTAGIIDNDEHKRFVR 200
BLAST of CMJ_chr2_002260.2 vs. ExPASy Swiss-Prot
Match: Y4826_ARATH (Uncharacterized protein At4g18257 OS=Arabidopsis thaliana OX=3702 GN=At4g18257 PE=1 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 9.751e-78 Identity = 123/199 (61.81%), Postives = 152/199 (76.38%), Query Frame = 0 Query: 8 EQERKKRVVVESLGWLTESSIMPKKQRSIEGVGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGSASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRKSTELESQQPHGSDVS--SAAPSD-NNEHEDNGSMLFNMKFVAPGRTSGTMDNSEHKRFVR 203
E+E KKRVV ESLGWLTESSIMPKK R+IEGVG SSI+ELKAQLY+SQEE++++K+ G D ++ RAK++IA +DSF+ KNSGV++R+LKDKLE KA DG+ SYAALEKKA+LY+KL RGELSDEE +EKYCVDFFRK + E +P + S SA P D + ED+GS LF+ KF G GT D +H R VR
Sbjct: 4 EEETKKRVVTESLGWLTESSIMPKKHRAIEGVGPSSIMELKAQLYKSQEEAKQTKDFTGSDAQYHRAKERIAAKDSFAAKNSGVESRNLKDKLEHKAVKDGAVSYAALEKKAQLYDKLARGELSDEEGEEKYCVDFFRKGIQHEDPKPSSTYNSSISAPPEDFKQDGEDDGS-LFSTKFAGLGHAIGTADVGQHVRMVR 201
BLAST of CMJ_chr2_002260.2 vs. ExPASy Swiss-Prot
Match: CC174_CHICK (Coiled-coil domain-containing protein 174 OS=Gallus gallus OX=9031 GN=CCDC174 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.346e-10 Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 0 Query: 39 VGLSSILELKAQLYQSQEESRKSKELNGPDVEFLRAKKKIAPRDSFSLKNSGVDARSLKDKLELKAANDGS--ASYAALEKKAELYEKLQRGELSDEEDKEKYCVDFFRK 146
V SS+++LKA+L++ QEE +K K L + F + K ++ +N+GV R+ KD +E KA D + S LE+KA+LYEK+ +G+ DEE ++ Y VDF +K
Sbjct: 10 VAASSLVDLKAELFRKQEEFKKEKLLKDAGI-FAKPKPSNKKPSIWTKQNTGVAKRAEKD-IEQKAEEDQTLDQSRKKLEEKAKLYEKMTKGDFPDEETEDLYLVDFTQK 117 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_002260.2 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_002260.2 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_002260.2 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_002260.2_cmj_v1 ID=CMJ_chr2_002260.2_cmj_v1; Name=CMJ_chr2_002260.2; organism=Citrus maxima; type=mRNA; length=612bpback to top protein sequence of CMJ_chr2_002260.2_cmj_v1 >CMJ_chr2_002260.2_cmj_v1 ID=CMJ_chr2_002260.2_cmj_v1; Name=CMJ_chr2_002260.2_cmj_v1; organism=Citrus maxima; type=polypeptide; length=204bpback to top mRNA from alignment at chr2:1314292..1316758+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2467bp; location=Sequence derived from: chr2:1314292..1316758+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:1314292..1316758+ >CMJ_chr2_002260.2_cmj_v1 ID=CMJ_chr2_002260.2_cmj_v1; Name=CMJ_chr2_002260.2; organism=Citrus maxima; type=CDS; length=612bp; location=Sequence derived from: chr2:1314292..1316758+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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