CMJ_chr2_003270.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A2H5N3H7|A0A2H5N3H7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_013410 PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 1.104e-59 Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0 Query: 1 MDRFGAFAIIFFVVFASSVPSLEARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
MDRFGAFAIIFFVVFASSVPSLEARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPS+KTHGA LD+EKLFARHLAGIDRILQSVPSPGIGH
Sbjct: 44 MDRFGAFAIIFFVVFASSVPSLEARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSKKTHGAALDNEKLFARHLAGIDRILQSVPSPGIGH 141
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: V4UKE2|V4UKE2_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018148mg PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.110e-59 Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 Query: 1 MDRFGAFAIIFFVVFASSVPSLEARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
MDRFGAFAIIFFVVFASSVPSLEARKLLNTE IDSSSKKVSSLFANLVLSALPKGRVPASSPS+KTHGA LD+EKLFARHLAGIDRILQSVPSPGIGH
Sbjct: 44 MDRFGAFAIIFFVVFASSVPSLEARKLLNTETIDSSSKKVSSLFANLVLSALPKGRVPASSPSKKTHGAALDNEKLFARHLAGIDRILQSVPSPGIGH 141
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A067GRE4|A0A067GRE4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047704mg PE=4 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 9.025e-46 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 Query: 23 EARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
EARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH
Sbjct: 23 EARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A061GDG5|A0A061GDG5_THECC (B-cell lymphoma 6 protein, putative OS=Theobroma cacao OX=3641 GN=TCM_029645 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.136e-35 Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0 Query: 1 MDRFGAFAIIFFVVFASSVPSLEARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
M RF +IF V+ AS VP +E+RKLLN S+K V SLFA+LVLSALPKG VPAS+PS+K H ATLD+EKLFARHLAGIDRILQSVPSPG GH
Sbjct: 1 MARFSYLVLIFLVISASFVPQMESRKLLNR---GDSNKNVPSLFASLVLSALPKGTVPASAPSKKGH-ATLDNEKLFARHLAGIDRILQSVPSPGAGH 94
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A6A2XYE5|A0A6A2XYE5_HIBSY (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116962pilonHSYRG00826 PE=4 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.726e-32 Identity = 65/98 (66.33%), Postives = 75/98 (76.53%), Query Frame = 0 Query: 1 MDRFGAFAIIFFVVFASSVPSLEARKLLNTEKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
M RF + II V+ AS VP +E+R LLNT S+K V SLFA+LVLSALPKG VP S+PS+K H ATLD+EKLFARHLA IDRIL+SVPSPG GH
Sbjct: 1 MARFSSLLIILSVISASFVPQMESRNLLNT---GDSNKNVPSLFASLVLSALPKGTVPPSAPSKKGH-ATLDNEKLFARHLADIDRILRSVPSPGAGH 94
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A1R3I0Q9|A0A1R3I0Q9_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_15868 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 7.351e-32 Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 0 Query: 1 MDRFGAFAI-IFFVVFASSVPSLEARKLLNTEKID--SSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
M RF + + I V+ AS +P +E+RKLLNT I S+ K V SLF +L L+ALPKG+VPAS+PS+K H ATLD+EKLFARHLAGIDRILQSVPSPG GH
Sbjct: 1 MARFTSLVMMIVLVISASFLPLMESRKLLNTGDIQQISNIKNVPSLFTSLFLNALPKGKVPASAPSKKGH-ATLDNEKLFARHLAGIDRILQSVPSPGAGH 100
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A1R3H599|A0A1R3H599_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31233 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 8.791e-32 Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0 Query: 1 MDRFGAFAI-IFFVVFASSVPSLEARKLLNT-EKIDSSSKKVSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
M RF + + IF V+ AS +P +E+RKLLNT ++ S+ K V SLF +L L+ALPKG+VPAS+PS+K H ATL++EKLFARHLAGIDRILQSVPSPG GH
Sbjct: 1 MARFTSLVMMIFLVISASFLPLMESRKLLNTGDQQISNIKNVPSLFTSLFLNALPKGKVPASAPSKKGH-ATLENEKLFARHLAGIDRILQSVPSPGAGH 99
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: B9H2E9|B9H2E9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G061300 PE=4 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.660e-31 Identity = 65/106 (61.32%), Postives = 80/106 (75.47%), Query Frame = 0 Query: 1 MDRFGAFAIIFFVVFASSVPSLEARKLLNT-----EKIDSSSKKVSSL---FANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
M RFGA +IF V FA+ V ++E RKLL + E SS+K+ +S FA+LVLSALPKG VP+SSPS+K H ATLD+E+LFARHLA IDRIL+SVPSPG+GH
Sbjct: 1 MARFGAVVLIFLVSFATIVSNIEGRKLLMSTGTPQENSSSSNKEGTSSVSSFASLVLSALPKGTVPSSSPSKKGH-ATLDNEQLFARHLASIDRILRSVPSPGVGH 105
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A4U5PYP3|A0A4U5PYP3_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000163570 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.691e-31 Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 0 Query: 1 MDRFGAFAIIFFVVFASSVPSLEARKLLNT----EKIDSSSKK-----VSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
M RFGA ++F V FA+ V ++E RKLL + +K +S S K VSS FA+LVLSALPKG VP+SSPS+K H ATLD+E+LFARHLA IDRIL+SVPSPG+GH
Sbjct: 1 MARFGALVLVFLVSFATIVSNIEGRKLLMSTGTPQKNNSGSNKEGPSSVSS-FASLVLSALPKGTVPSSSPSKKGH-ATLDNEQLFARHLASIDRILRSVPSPGVGH 105
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Match: A0A2P5WBJ3|A0A2P5WBJ3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA32231 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.023e-30 Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 0 Query: 1 MDRFGAFAIIFFVVFASS-VPSLEARKLLNTEKIDSSSKKVSSLFANLVLSALPKG-RVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
M RF + IIF V+ ++S VP +E+RKLLN + ++ V SLFA+L+LSALPKG +VPAS+PS+K H ATLD+EKLFARHLA IDRILQSVPSPG GH
Sbjct: 1 MARFSSLVIIFLVIISASFVPQMESRKLLNAGE---RNENVPSLFASLMLSALPKGSKVPASAPSKKGH-ATLDNEKLFARHLARIDRILQSVPSPGAGH 96
BLAST of CMJ_chr2_003270.1 vs. ExPASy Swiss-Prot
Match: PCP14_ARATH (Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.432e-16 Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 0 Query: 7 FAIIFFVVFASSVPSL-EARKLLNTEKIDSSSKK------VSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
+ I F V S++PSL +RKLL +K ++ + + + + LSALPKG++P S+PS+K H A KL +RHL+ +DR L+SVPSPG+GH
Sbjct: 10 WLFIVFAVIVSALPSLVSSRKLLEVKKQENLTVREEEKSHMPHVTKTSTLSALPKGKIPNSTPSKKGHAAVFA-GKLRSRHLSTVDRYLRSVPSPGVGH 107
BLAST of CMJ_chr2_003270.1 vs. Araport11
Match: AT1G29290.1 (| B-cell lymphoma 6 protein | Chr1:10245055-10245378 FORWARD LENGTH=107 | 201606) HSP 1 Score: 71.633 bits (174), Expect = 1.465e-17 Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 0 Query: 7 FAIIFFVVFASSVPSL-EARKLLNTEKIDSSSKK------VSSLFANLVLSALPKGRVPASSPSRKTHGATLDHEKLFARHLAGIDRILQSVPSPGIGH 98
+ I F V S++PSL +RKLL +K ++ + + + + LSALPKG++P S+PS+K H A KL +RHL+ +DR L+SVPSPG+GH
Sbjct: 10 WLFIVFAVIVSALPSLVSSRKLLEVKKQENLTVREEEKSHMPHVTKTSTLSALPKGKIPNSTPSKKGHAAVFA-GKLRSRHLSTVDRYLRSVPSPGVGH 107 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_003270.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_003270.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_003270.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_003270.1_cmj_v1 ID=CMJ_chr2_003270.1_cmj_v1; Name=CMJ_chr2_003270.1; organism=Citrus maxima; type=mRNA; length=297bpback to top protein sequence of CMJ_chr2_003270.1_cmj_v1 >CMJ_chr2_003270.1_cmj_v1 ID=CMJ_chr2_003270.1_cmj_v1; Name=CMJ_chr2_003270.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=99bpback to top mRNA from alignment at chr2:1876445..1877852- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1408bp; location=Sequence derived from: chr2:1876445..1877852- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:1876445..1877852- >CMJ_chr2_003270.1_cmj_v1 ID=CMJ_chr2_003270.1_cmj_v1; Name=CMJ_chr2_003270.1; organism=Citrus maxima; type=CDS; length=297bp; location=Sequence derived from: chr2:1876445..1877852- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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