CMJ_chr2_004110.3
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: A0A067GQS0|A0A067GQS0_CITSI (PP28 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030936mg PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 3.622e-90 Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLGE 137
MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEK ERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLGE
Sbjct: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKSERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLGE 137
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: A0A067GR18|A0A067GR18_CITSI (PP28 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030936mg PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 1.700e-89 Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEK ERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL
Sbjct: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKSERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: V4UK57|V4UK57_CITCL (PP28 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10016983mg PE=4 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 1.942e-89 Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLGE 137
MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKRE+AEHVEEVSEDEAAGEESGEESGEELEEK ERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLGE
Sbjct: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREEAEHVEEVSEDEAAGEESGEESGEELEEKSERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLGE 137
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: A0A2H5N3W2|A0A2H5N3W2_CITUN (PP28 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_012490 PE=4 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 9.412e-89 Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKRE+AEHVEEVSEDEAAGEESGEESGEELEEK ERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL
Sbjct: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREEAEHVEEVSEDEAAGEESGEESGEELEEKSERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: V4U9P6|V4U9P6_CITCL (PP28 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10016983mg PE=4 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 9.412e-89 Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKRE+AEHVEEVSEDEAAGEESGEESGEELEEK ERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL
Sbjct: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREEAEHVEEVSEDEAAGEESGEESGEELEEKSERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: A0A067GGH4|A0A067GGH4_CITSI (PP28 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030936mg PE=4 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 1.240e-87 Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLE-RRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEK E RRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL
Sbjct: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKSEQRRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 136
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: A0A067JLZ9|A0A067JLZ9_JATCU (PP28 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_21501 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.813e-61 Identity = 100/135 (74.07%), Postives = 120/135 (88.89%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFKGKPTG RQFSTPE++LAGTS RPRTF+RE+AE+ +E ++E+ GE+S +ES +EL++K RKGTQGLI+I NPNLVK KN+KA+D+D GKTTELSRREREELEKQRAHERYM+LQEQGKTE+AR DL
Sbjct: 1 MGRGKFKGKPTGHRQFSTPEEMLAGTSTRPRTFRREEAEYEKEHDKEES-GEDSEQESDDELDQK---RKGTQGLIQIENPNLVKPKNVKARDIDIGKTTELSRREREELEKQRAHERYMRLQEQGKTEQARKDL 131
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: A0A6P5WJ40|A0A6P5WJ40_DURZI (28 kDa heat- and acid-stable phosphoprotein-like OS=Durio zibethinus OX=66656 GN=LOC111275009 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.924e-56 Identity = 103/135 (76.30%), Postives = 119/135 (88.15%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFK KPTGQR FSTPE++LAGTS RPRTFKR++AE+ E+ +E +G+ESGEES +E E+K RKGTQG+IE+NNPNLVK KNLKA+DVD GKTTELSRREREELEKQRAHERYM+LQEQGKTE+AR DL
Sbjct: 1 MGRGKFKAKPTGQRHFSTPEEMLAGTSSRPRTFKRQEAEYKEQEESEEESGQESGEESDDETEQK---RKGTQGVIEVNNPNLVKPKNLKARDVDTGKTTELSRREREELEKQRAHERYMRLQEQGKTEQARKDL 132
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: A0A6P5WY42|A0A6P5WY42_DURZI (28 kDa heat- and acid-stable phosphoprotein-like OS=Durio zibethinus OX=66656 GN=LOC111278159 PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.791e-56 Identity = 102/135 (75.56%), Postives = 118/135 (87.41%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFK KPTGQR FSTPE++LAGTS RPRTFKR++AE+ EE+ DE +G+ESGEES + E+K RKGTQG+IEINNPNL K KN+KA+DVD GKTTELSRREREELEKQRAHERYM+LQEQGKTE+A+ DL
Sbjct: 1 MGRGKFKAKPTGQRHFSTPEEMLAGTSTRPRTFKRQEAEYKEELEPDEESGQESGEESDDGTEQK---RKGTQGVIEINNPNLQKPKNVKARDVDIGKTTELSRREREELEKQRAHERYMRLQEQGKTEQAKKDL 132
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Match: B9S940|B9S940_RICCO (28 kDa heat-and acid-stable phosphoprotein, putative OS=Ricinus communis OX=3988 GN=RCOM_1012220 PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 2.662e-55 Identity = 101/135 (74.81%), Postives = 116/135 (85.93%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSRRPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFKGKPTGQR FSTPE++LAGTS RPRTFKRE+AE+ E + + + EES EESG+E ++K RKGTQGLI+I NPNL K KNLKA+D+D GKTTELSRREREELEKQRAHERYM+LQEQGKTE+AR DL
Sbjct: 1 MGRGKFKGKPTGQRHFSTPEEMLAGTSTRPRTFKREEAEYKVE-NPEVESEEESEEESGDEQDQK---RKGTQGLIQIENPNLAKPKNLKARDIDIGKTTELSRREREELEKQRAHERYMRLQEQGKTEQARKDL 131
BLAST of CMJ_chr2_004110.3 vs. ExPASy Swiss-Prot
Match: HAP28_HUMAN (28 kDa heat- and acid-stable phosphoprotein OS=Homo sapiens OX=9606 GN=PDAP1 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.478e-16 Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 Query: 14 RQFSTPEDILAGTSRRPRTFKREQAEHVEEVSE--DEAAGEESGEESG-------EELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLG 136
RQ+++PE+I A ++++A EE E D AAG+ E+ +E ++ ++RKG +GLI+I NPN V K +D ELSRREREE+EKQ+A ERYM++ GKTE+A+ DL
Sbjct: 15 RQYTSPEEIDAQLQ-----AEKQKAREEEEQKEGGDGAAGDPKKEKKSLDSDESEDEEDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLA 141
BLAST of CMJ_chr2_004110.3 vs. ExPASy Swiss-Prot
Match: HAP28_RAT (28 kDa heat- and acid-stable phosphoprotein OS=Rattus norvegicus OX=10116 GN=Pdap1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.087e-16 Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 0 Query: 67 ERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLG 136
++RKG +GLI+I NPN V K +D ELSRREREE+EKQ+A ERYM++ GKTE+A+ DL
Sbjct: 72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLA 141
BLAST of CMJ_chr2_004110.3 vs. ExPASy Swiss-Prot
Match: HAP28_MOUSE (28 kDa heat- and acid-stable phosphoprotein OS=Mus musculus OX=10090 GN=Pdap1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.087e-16 Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 0 Query: 67 ERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDLG 136
++RKG +GLI+I NPN V K +D ELSRREREE+EKQ+A ERYM++ GKTE+A+ DL
Sbjct: 72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLA 141
BLAST of CMJ_chr2_004110.3 vs. Araport11
Match: AT5G46020.1 (| 28 kDa heat/acid-stable phosphoprotein-like protein | Chr5:18663075-18664629 REVERSE LENGTH=164 | 201606) HSP 1 Score: 144.05 bits (362), Expect = 1.175e-44 Identity = 85/136 (62.50%), Postives = 105/136 (77.21%), Query Frame = 0 Query: 1 MGRGKFKGKPTGQRQFSTPEDILAGTSR-RPRTFKREQAEHVEEVSEDEAAGEESGEESGEELEEKLERRKGTQGLIEINNPNLVKAKNLKAKDVDFGKTTELSRREREELEKQRAHERYMQLQEQGKTEKARLDL 135
MGRGKFKGKPTGQR+FS+ DILAGTS RPR+FK+++AE+ E+V E+ E E + ++KG + +IE++NPN V+ K LKAKD+D KTTELSRREREELEKQRAHERYM+LQEQGKTE+AR DL
Sbjct: 1 MGRGKFKGKPTGQRRFSSAADILAGTSAARPRSFKQKEAEYEEDVEEESEEESEEESEDEAD-----VKKKGAEAVIEVDNPNRVRQKTLKAKDLDASKTTELSRREREELEKQRAHERYMRLQEQGKTEQARKDL 131 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_004110.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_004110.3 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_004110.3 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_004110.3_cmj_v1 ID=CMJ_chr2_004110.3_cmj_v1; Name=CMJ_chr2_004110.3; organism=Citrus maxima; type=mRNA; length=414bpback to top protein sequence of CMJ_chr2_004110.3_cmj_v1 >CMJ_chr2_004110.3_cmj_v1 ID=CMJ_chr2_004110.3_cmj_v1; Name=CMJ_chr2_004110.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=138bpback to top mRNA from alignment at chr2:2397084..2399549- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2466bp; location=Sequence derived from: chr2:2397084..2399549- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:2397084..2399549- >CMJ_chr2_004110.3_cmj_v1 ID=CMJ_chr2_004110.3_cmj_v1; Name=CMJ_chr2_004110.3; organism=Citrus maxima; type=CDS; length=414bp; location=Sequence derived from: chr2:2397084..2399549- (Citrus maximaback to top |