CMJ_chr2_004220.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A067GDP1|A0A067GDP1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039766mg PE=4 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 4.397e-122 Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 0 Query: 1 MLTNSLLTSSSILVPCADCSSPMATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERMRRTSSDMSKGHGICIPLLKMSRSRIKTKTVIHDGHGMRPNDQCLS 174
MLTNSLLTS SILVPCADCSSPMATEEHEMS GWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHER+RRTSSDMSKGHGICIPLLKMSRSRIKTKTV HDGHGMRPNDQCLS
Sbjct: 1 MLTNSLLTSPSILVPCADCSSPMATEEHEMSTGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERIRRTSSDMSKGHGICIPLLKMSRSRIKTKTVTHDGHGMRPNDQCLS 174
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A2H5N4R1|A0A2H5N4R1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_012270 PE=4 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 2.936e-121 Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0 Query: 1 MLTNSLLTSSSILVPCADCSSPMATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERMRRTSSDMSKGHGICIPLLKMSRSRIKTKTVIHDGHGMRPNDQCLS 174
MLTNSLLT SILVPCADCSSPMATEEHEMS GWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHER+RRTSSDMSKGHGICIPLLKMSRSRIKTKTV HDGHGMRPNDQCLS
Sbjct: 1 MLTNSLLTPPSILVPCADCSSPMATEEHEMSTGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERIRRTSSDMSKGHGICIPLLKMSRSRIKTKTVTHDGHGMRPNDQCLS 174
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: V4TQ82|V4TQ82_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016932mg PE=4 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 2.936e-121 Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0 Query: 1 MLTNSLLTSSSILVPCADCSSPMATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERMRRTSSDMSKGHGICIPLLKMSRSRIKTKTVIHDGHGMRPNDQCLS 174
MLTNSLLT SILVPCADCSSPMATEEHEMS GWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHER+RRTSSDMSKGHGICIPLLKMSRSRIKTKTV HDGHGMRPNDQCLS
Sbjct: 1 MLTNSLLTPPSILVPCADCSSPMATEEHEMSTGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERIRRTSSDMSKGHGICIPLLKMSRSRIKTKTVTHDGHGMRPNDQCLS 174
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A6J1B663|A0A6J1B663_9ROSI (uncharacterized protein LOC110424629 isoform X2 OS=Herrania umbratica OX=108875 GN=LOC110424629 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.419e-41 Identity = 90/150 (60.00%), Postives = 107/150 (71.33%), Query Frame = 0 Query: 23 MATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERM----------RRTSSDMSKGHGICIPLL-----KMSRSRIKTK 157
MATE HEMSNGWPLGL+IM+ RLR+ E LQ A APA EPYS+H+ + SFSSF+SSNLDTES+ASFFQDNSVSLGRLIGF+ +R +LYF N I EE+ R+ RR +SDMS+ GICIPL+ KMSR R K+K
Sbjct: 1 MATENHEMSNGWPLGLQIMTMRLRLQERLQ-------AAAPAVEPYSLHMPSSSFSSFASSNLDTESSASFFQDNSVSLGRLIGFRPRDRGALYFQNTIHAEENNRLPVTGACKDVSRRHNSDMSQ--GICIPLILGALVKMSRIRSKSK 141
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A061GF57|A0A061GF57_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029811 PE=4 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 5.012e-40 Identity = 88/152 (57.89%), Postives = 107/152 (70.39%), Query Frame = 0 Query: 23 MATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERM----------RRTSSDMSKGHGICIPLL-----KMSRSRIKTKTV 159
MAT+ EMSNGWPLGL+IM+ RLR+ E LQ A AP EPYS+H+ + SFSSFSSSNLDTES+ASFFQDNSVSLGRLIGF+ +R +LYF N I EE+ R+ RR +SDMS+ GICIPL+ KMSR+R K+K +
Sbjct: 1 MATQNREMSNGWPLGLQIMTMRLRLQERLQ-------AAAPTVEPYSLHMPSSSFSSFSSSNLDTESSASFFQDNSVSLGRLIGFRPRDRGALYFQNTIHAEENNRLPVTGACKDVSRRHNSDMSQ--GICIPLILGALVKMSRNRSKSKQL 143
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A6J1B6F1|A0A6J1B6F1_9ROSI (uncharacterized protein LOC110424629 isoform X1 OS=Herrania umbratica OX=108875 GN=LOC110424629 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 6.378e-39 Identity = 86/149 (57.72%), Postives = 106/149 (71.14%), Query Frame = 0 Query: 24 ATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERM----------RRTSSDMSKGHGICIPLL-----KMSRSRIKTK 157
+++ HEMSNGWPLGL+IM+ RLR+ E LQ A APA EPYS+H+ + SFSSF+SSNLDTES+ASFFQDNSVSLGRLIGF+ +R +LYF N I EE+ R+ RR +SDMS+ GICIPL+ KMSR R K+K
Sbjct: 13 SSQNHEMSNGWPLGLQIMTMRLRLQERLQ-------AAAPAVEPYSLHMPSSSFSSFASSNLDTESSASFFQDNSVSLGRLIGFRPRDRGALYFQNTIHAEENNRLPVTGACKDVSRRHNSDMSQ--GICIPLILGALVKMSRIRSKSK 152
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A6P6BJN8|A0A6P6BJN8_DURZI (uncharacterized protein LOC111318728 OS=Durio zibethinus OX=66656 GN=LOC111318728 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.774e-37 Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 0 Query: 17 ADCSSPMATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERMRRTSS--DMSKGH------GICIPLL-----KMSRSRIKTKTV 159
A + MA E HE SNGWPLGL+IM+ RLR+ E LQ A AP PYS+H+ + SFSSFSSSNLDTES+ASFFQDNSVSLG+LIGF+ +R S+Y N +R E+ + + + D+S+GH GICIPL+ K+SR+R K+KT+
Sbjct: 4 AIGAQAMAAENHETSNGWPLGLQIMNMRLRLQERLQ-------AAAPVVGPYSLHIPSSSFSSFSSSNLDTESSASFFQDNSVSLGKLIGFRQHDRGSVYLQNTMRTEQSNGLAVSGARKDVSRGHSADMTQGICIPLILGALVKISRNRSKSKTL 152
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A6P5X5D0|A0A6P5X5D0_DURZI (uncharacterized protein LOC111280467 isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111280467 PE=4 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.988e-37 Identity = 89/153 (58.17%), Postives = 105/153 (68.63%), Query Frame = 0 Query: 23 MATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNR-RSLYFPNAIRFEEHER----------MRRTSSDMSKGHGICIPLL-----KMSRSRIKTKTV 159
MATE HEMS GWPLGL+IMS RLR+ E LQ A +PA EPYS+H+ + SFSSFSSSNLDT+S+ASFFQDNSVSLG LIGF+ +R SLYF N IR EE R R S+DMS+ GICIPL+ KMSR+R K+K +
Sbjct: 1 MATENHEMSKGWPLGLQIMSMRLRLQERLQ-----AASPA-VNEPYSLHIPSSSFSSFSSSNLDTQSSASFFQDNSVSLGMLIGFRPHDRGSSLYFQNTIRTEESNRPPVTGACKDVSRGQSTDMSQ--GICIPLIQGALVKMSRNRSKSKQL 145
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A6P6G7P0|A0A6P6G7P0_ZIZJJ (uncharacterized protein LOC107425182 isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107425182 PE=4 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.608e-36 Identity = 83/150 (55.33%), Postives = 100/150 (66.67%), Query Frame = 0 Query: 23 MATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYSIHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGFKAGNRRSLYFPNAIRFEEHERMRR--TSSDMSKG-------HGICIPLL-----KMSRSRIKTKT 158
M ++ E NGWPLGLEIM+ R RV ESL + A EPYS+HV + SFSSF+SSNLDTESTASFFQD+SV LGRLIG + GN LYF N+ RFEEH R+ R T S++S+G GICIP+L KMSRS+ K K+
Sbjct: 1 MGIQDQETPNGWPLGLEIMNIRFRVVESLSAAA----------EPYSLHVPSASFSSFTSSNLDTESTASFFQDHSVPLGRLIGIRPGNGGRLYFANSFRFEEHARIAREGTHSNVSRGGREVDMCRGICIPILLGALVKMSRSKSKCKS 140
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Match: A0A2C9U9A1|A0A2C9U9A1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G031300 PE=4 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.010e-36 Identity = 88/151 (58.28%), Postives = 106/151 (70.20%), Query Frame = 0 Query: 23 MATEEHEMSNGWPLGLEIMSTRLRVTESLQSQAVRAPAPAPAEEPYS-IHVRAISFSSFSSSNLDTESTASFFQDNSVSLGRLIGF--KAGNRRSLYFPNAIRFEEHER--MRRTSSDMSKGH------GICIPLL-----KMSRSRIKTK 157
MATEE+E SNGWPLGL+IM+ RLRV ES+Q A + EPYS H+R+ SFSSFSSSNLDTESTASFFQDNS SLGRLIG + GN LY P I+ +E ER +R+ SS++S+GH G+CIPLL KMSRS+ KT+
Sbjct: 1 MATEENETSNGWPLGLQIMAMRLRVMESVQ---------AASAEPYSSAHLRSSSFSSFSSSNLDTESTASFFQDNSKSLGRLIGIQPRKGN-GDLYLPTRIQLDERERKSVRKASSEVSRGHRPEVSEGLCIPLLVATMEKMSRSKSKTR 141 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_004220.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_004220.1_cmj_v1 ID=CMJ_chr2_004220.1_cmj_v1; Name=CMJ_chr2_004220.1; organism=Citrus maxima; type=mRNA; length=525bpback to top protein sequence of CMJ_chr2_004220.1_cmj_v1 >CMJ_chr2_004220.1_cmj_v1 ID=CMJ_chr2_004220.1_cmj_v1; Name=CMJ_chr2_004220.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=175bpback to top mRNA from alignment at chr2:2490478..2492798+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2321bp; location=Sequence derived from: chr2:2490478..2492798+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:2490478..2492798+ >CMJ_chr2_004220.1_cmj_v1 ID=CMJ_chr2_004220.1_cmj_v1; Name=CMJ_chr2_004220.1; organism=Citrus maxima; type=CDS; length=525bp; location=Sequence derived from: chr2:2490478..2492798+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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