CMJ_chr2_004500.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A067GG23|A0A067GG23_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034223mg PE=3 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 3.507e-68 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 Query: 1 MDLKVVMMLFMVAAAVVDSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRPTATAPRRSDSLD 101 MDLKVVMMLFMVAAAVVDSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRPTATAPRRSDSLD Sbjct: 1 MDLKVVMMLFMVAAAVVDSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRPTATAPRRSDSLD 101
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A2H5N2Q9|A0A2H5N2Q9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_012000 PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 1.066e-66 Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0 Query: 1 MDLKVVMMLFMVAAAVVDSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRPTATAPRRSDSLD 101 M+LKVVM LFMVAAAVVDSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRPTATAPRRSDSLD Sbjct: 1 MNLKVVMTLFMVAAAVVDSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRPTATAPRRSDSLD 101
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A067GDD0|A0A067GDD0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044503mg PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 4.130e-22 Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 0 Query: 5 VVMMLFMVAAAVV-----DSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRP 89 ++ M+F+ V+ +++A S +WGR+ NI R+ED E+LMPTEDSRR L + SY AL+GNSVPC+ G+SYYNCNG G + P Sbjct: 8 LISMVFLALGIVMAMMASETNAFDSGNWGRLTNIGRIEDDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNP 97
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: V4RS89|V4RS89_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030160mg PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.670e-21 Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 0 Query: 1 MDLKVVMMLFMVAAAVV-----DSSAHGSSSWGRINNINRVE--DPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRG 85 M K++ +LF+ A VV +S A S+WGRINN+ R+ D NEMLMPTE+SRRQL G + SYGAL NSVPC+ G+SYYNCN G Sbjct: 1 MGSKLMSLLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGG 92
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A067DL54|A0A067DL54_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037899mg PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.670e-21 Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 0 Query: 1 MDLKVVMMLFMVAAAVV-----DSSAHGSSSWGRINNINRVE--DPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRG 85 M K++ +LF+ A VV +S A S+WGRINN+ R+ D NEMLMPTE+SRRQL G + SYGAL NSVPC+ G+SYYNCN G Sbjct: 1 MGSKLMSLLFLTTAVVVVAMAAESRAFDGSNWGRINNVGRINEYDENEMLMPTEESRRQLWGGGFISYGALRANSVPCNRRGTSYYNCNHGG 92
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A2P6Q451|A0A2P6Q451_ROSCH (Putative rapid ALkalinization Factor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0008661 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.244e-13 Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0 Query: 1 MDLKVVMMLFMVA---AAVVDSSAHGSSSWG---RINNI-NRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGR 84 MDLK +++ +VA A V+SS ++WG R NN+ + + + EML+ +ED RRQL+ + SY AL+ +++PC G SYY+CN R Sbjct: 1 MDLKSCLVVLLVALAMVAAVESSKIHDAAWGLKQRHNNVGDMIGEETEMLLDSEDGRRQLMQGRFISYEALKKDNIPCGQRGKSYYDCNNR 91
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A1Q3BF98|A0A1Q3BF98_CEPFO (RALF domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10207 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.182e-13 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 0 Query: 1 MDLKVVMMLFMVA-AAVVDSSAHGSSSWGRINNINRVEDPNEMLMPTEDSRRQLLG-TWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRP 89 M K+ ++ ++A A VV+S+ +SWG N + +E +ML+ TE +RRQL + Y SYGAL+ N+VPC+ G SYYNCN R P Sbjct: 1 MHSKLWLIFALLALAMVVESTTFEDASWGLTNFGHGIEYDTDMLLDTEINRRQLAQRSRYISYGALKRNAVPCNRRGQSYYNCNKRQKVNP 91
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A5B7BFR9|A0A5B7BFR9_DAVIN (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036507 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.742e-12 Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 1 MDLKVVMMLFMVAAA-VVDSSAHGSSSWGRIN--------NINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRP 89 M ++ ++L +VA+A VV+S G + WG + + + +EM+M +E +RR L T + SYGAL+ N++PC+ G+SYYNCN RG + P Sbjct: 76 MAFRLGLVLLLVASAMVVESKLLGETDWGLAHLSGGGNELVADFINPEDEMMMDSESARRTLAQTRFISYGALKANNIPCNRRGNSYYNCNQRGRANP 173
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: G7ZYF5|G7ZYF5_MEDTR (Putative rapid ALkalinization Factor OS=Medicago truncatula OX=3880 GN=25493143 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.861e-12 Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0 Query: 1 MDLKVVMMLFMVAAAVVDSSAHGSS----SWGRINNINRVEDPNEMLMPTEDSRRQLLGTW--YSSYGALEGNSVPCDAPGSSYYNCNGRGLSRP 89 +++K +M F +A + SA S ++ + + + D NEMLM +E +RR L G Y SYGAL+ N++PC G SYY+CN RG + P Sbjct: 2 LNIKSWIMFFFLAMLIAMVSAEASKVHDFTFASVRVGDLIGDDNEMLMDSESNRRTLAGRKRRYISYGALKANNIPCGQKGQSYYDCNARGQANP 96
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Match: A0A5B6YGW5|A0A5B6YGW5_DAVIN (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_000370 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.943e-12 Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 1 MDLKVVMMLFMVAAA-VVDSSAHGSSSWGRIN--------NINRVEDPNEMLMPTEDSRRQLLGTWYSSYGALEGNSVPCDAPGSSYYNCNGRGLSRP 89 M ++ ++L +VA+A VV+S G + WG + + + +EM+M +E +RR L T + SYGAL+ N++PC+ G+SYYNCN RG + P Sbjct: 96 MAFRLGLVLLLVASAMVVESKLLGETDWGLAHLSGGGNELVADFINPEDEMMMDSESARRTLAQTRFISYGALKANNIPCNRRGNSYYNCNQRGRANP 193 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_004500.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_004500.1_cmj_v1 ID=CMJ_chr2_004500.1_cmj_v1; Name=CMJ_chr2_004500.1; organism=Citrus maxima; type=mRNA; length=306bpback to top protein sequence of CMJ_chr2_004500.1_cmj_v1 >CMJ_chr2_004500.1_cmj_v1 ID=CMJ_chr2_004500.1_cmj_v1; Name=CMJ_chr2_004500.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=102bpback to top mRNA from alignment at chr2:2653251..2654093+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=843bp; location=Sequence derived from: chr2:2653251..2654093+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:2653251..2654093+ >CMJ_chr2_004500.1_cmj_v1 ID=CMJ_chr2_004500.1_cmj_v1; Name=CMJ_chr2_004500.1; organism=Citrus maxima; type=CDS; length=306bp; location=Sequence derived from: chr2:2653251..2654093+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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