CMJ_chr2_004590.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr2_004590.1
Unique Name	CMJ_chr2_004590.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	240

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cizcmjL108	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcmjL261	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cmjcmmR101	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL010	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caacmjL093	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cmhcmjL083	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcsjR160	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR203	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR226	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cchcmjL059	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchcmjL139	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis

Orthologs


Gene/Transcript	Assembly	Species
Cic156070.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
huyou00008214-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
Cms261160.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
drCitSine.Jinhong.1.0.HA2g05100.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
drCitSine.Jinhong.1.0.HB2g05250.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr2_004590	CMJ_chr2_004590_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_004590.1.exon1	CMJ_chr2_004590.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_004590.1.cds.1	CMJ_chr2_004590.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_004590.1_cmj_v1	CMJ_chr2_004590.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr2_004590.1_cmj_v1	CMJ_chr2_004590.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr2_004590.1 vs.
BLAST of CMJ_chr2_004590.1 vs.
BLAST of CMJ_chr2_004590.1 vs.

BLAST of CMJ_chr2_004590.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr2_004590.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr2_004590.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:2703434..2703673+
coding sequence from alignment at chr2:2703434..2703673+

mRNA sequence

>CMJ_chr2_004590.1_cmj_v1 ID=CMJ_chr2_004590.1_cmj_v1; Name=CMJ_chr2_004590.1; organism=Citrus maxima; type=mRNA; length=240bp
ATGGAGGGAAGTGGTACAGTGTGCTTGAATATGCAAAAACAATCAGAGTC
TACCAACTGCAATGAACTGGATGCAGTAGGAAATGCATTAGTTGCCACCG
TTAAGAAGATAACCGTTGCCCACAGACAACAACAGTGTTGGATACATCCT
AAGAAGAAACAGGGTACCTTCACTTTATCTCTTTTAAGAAGATTAAACAG
TTCAATATGGAGGTATAACAGAAACAGTGGACTACACTGA

protein sequence of CMJ_chr2_004590.1_cmj_v1

>CMJ_chr2_004590.1_cmj_v1 ID=CMJ_chr2_004590.1_cmj_v1; Name=CMJ_chr2_004590.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=80bp
MEGSGTVCLNMQKQSESTNCNELDAVGNALVATVKKITVAHRQQQCWIHP
KKKQGTFTLSLLRRLNSSIWRYNRNSGLH*

mRNA from alignment at chr2:2703434..2703673+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=240bp; location=Sequence derived from: chr2:2703434..2703673+ (Citrus maxima
ATGGAGGGAAGTGGTACAGTGTGCTTGAATATGCAAAAACAATCAGAGTC
TACCAACTGCAATGAACTGGATGCAGTAGGAAATGCATTAGTTGCCACCG
TTAAGAAGATAACCGTTGCCCACAGACAACAACAGTGTTGGATACATCCT
AAGAAGAAACAGGGTACCTTCACTTTATCTCTTTTAAGAAGATTAAACAG
TTCAATATGGAGGTATAACAGAAACAGTGGACTACACTGA

Coding sequence (CDS) from alignment at chr2:2703434..2703673+

>CMJ_chr2_004590.1_cmj_v1 ID=CMJ_chr2_004590.1_cmj_v1; Name=CMJ_chr2_004590.1; organism=Citrus maxima; type=CDS; length=240bp; location=Sequence derived from: chr2:2703434..2703673+ (Citrus maxima
ATGGAGGGAAGTGGTACAGTGTGCTTGAATATGCAAAAACAATCAGAGTC
TACCAACTGCAATGAACTGGATGCAGTAGGAAATGCATTAGTTGCCACCG
TTAAGAAGATAACCGTTGCCCACAGACAACAACAGTGTTGGATACATCCT
AAGAAGAAACAGGGTACCTTCACTTTATCTCTTTTAAGAAGATTAAACAG
TTCAATATGGAGGTATAACAGAAACAGTGGACTACACTGA