CMJ_chr2_005650.3
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A067GJZ5|A0A067GJZ5_CITSI (F-box domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029717mg PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 7.936e-75 Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0 Query: 1 MALGQNCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALGQNCSSLKSRRG+ASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREA I
Sbjct: 1 MALGQNCSSLKSRRGVASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLI 114
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: V4U8Z6|V4U8Z6_CITCL (F-box domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10016832mg PE=4 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 8.462e-74 Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0 Query: 1 MALGQNCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALGQNCSSLKSRRG+A TGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREA I
Sbjct: 1 MALGQNCSSLKSRRGVAGTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLI 114
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A2H5N2A9|A0A2H5N2A9_CITUN (F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_011000 PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 1.383e-72 Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0 Query: 1 MALGQNCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALGQNCSSLKSRRG+A TGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMID NCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREA I
Sbjct: 1 MALGQNCSSLKSRRGVAGTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDSNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLI 114
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A5C7GS55|A0A5C7GS55_9ROSI (F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026581 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.026e-41 Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 0 Query: 1 MALGQNCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG L+ +RG+ +GLGLG VRYTRGLGRKRILI+N ET S + LKRQCS +M+DF DE+ +LE LPQDILIRI+ GVNHEDLKQLFHVS+ IREA I
Sbjct: 1 MALGGKRGWLRVKRGVMDAEDGLGLGSVRYTRGLGRKRILISNVAETPSSSEKITRTPLKRQCSARMVDFESDERFQLEFLPQDILIRIISGVNHEDLKQLFHVSKSIREATQI 114
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A2I4EFJ7|A0A2I4EFJ7_JUGRE (F-box protein SKIP27-like OS=Juglans regia OX=51240 GN=LOC109020679 PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.411e-35 Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 0 Query: 1 MALGQNC-SSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDE-KSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG+ C +SL+S+RGL + E LGLGF+R+T GLGRKR+L++N E S DSA ++ K+QC+E+M+ D +S LEALPQDILIR+LCGVNHEDLK LFHVS+ IREA I
Sbjct: 1 MALGKRCNTSLRSKRGLVAE-EALGLGFLRFTGGLGRKRVLVSNDLEDSPIDSAPRTPP-KKQCAERMV---LDAGRSSLEALPQDILIRVLCGVNHEDLKHLFHVSKVIREATLI 111
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A7N2LEQ2|A0A7N2LEQ2_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.087e-35 Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 0 Query: 1 MALGQNC-SSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKM-IDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG+ C SSLKS+R + GE LGLG+VRYTR GRKRILI+N E + DSA K+ S K+ C E++ +D E+S LEALPQDILIR+LCGVNHEDLKQLFHVS+ IREA I
Sbjct: 1 MALGKRCGSSLKSKRVVG--GEELGLGYVRYTRSFGRKRILISNHFEGLAIDSAPKTPS-KKMCGERLGLD---SERSLLEALPQDILIRVLCGVNHEDLKQLFHVSKSIREATLI 110
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A061GEV8|A0A061GEV8_THECC (F-box family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_029991 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 7.476e-34 Identity = 71/120 (59.17%), Postives = 86/120 (71.67%), Query Frame = 0 Query: 1 MALGQ--NCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANG-EETSSFDSATKSSSLKRQCSEKMIDFNCD---EKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MA G+ SL+ G + E LGLGFVRYTRGLGRKRI I+N EE+ DSAT+ LKRQCSE+M+ D EKS LE+LPQD+LIRI+CGV+H+DLKQLF+VS+ IREA I
Sbjct: 3 MASGRVYRSPSLRLTHGGVNEEEELGLGFVRYTRGLGRKRIEISNEMEESLPLDSATEFPLLKRQCSERMVMMMIDDYHEKSALESLPQDVLIRIICGVDHKDLKQLFNVSKSIREATVI 122
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A6J1B5E0|A0A6J1B5E0_9ROSI (F-box protein SKIP27-like OS=Herrania umbratica OX=108875 GN=LOC110424203 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 9.705e-34 Identity = 70/120 (58.33%), Postives = 86/120 (71.67%), Query Frame = 0 Query: 1 MALGQ--NCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANG-EETSSFDSATKSSSLKRQCSEKMIDFNCD---EKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MA G+ SL+ + + E LGLGFVRYTRGLGRKRI I+N EE+ DSAT+ LKRQCSE+M+ D EKS LE+LPQD+LIRI+CGV+H+DLKQLF+VS+ IREA I
Sbjct: 3 MASGRVYRSPSLRLTHDVVNEEEELGLGFVRYTRGLGRKRIEISNEMEESLPLDSATEFPLLKRQCSERMVMMMIDDYHEKSVLESLPQDVLIRIICGVDHKDLKQLFNVSKSIREATVI 122
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A7J7C3B3|A0A7J7C3B3_TRIWF (F-box protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G00789 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.664e-33 Identity = 68/116 (58.62%), Postives = 84/116 (72.41%), Query Frame = 0 Query: 1 MALGQNCSSLKSRRGLASTG-EGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKM-IDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG+ +LKS+RG S E LG GFV+YTRG GRKR++I+N E S+ ++SS KRQCS++M + F EKS LE LPQDILIR+LCG+ H DLKQLFHVS+ IREA I
Sbjct: 1 MALGKRSRALKSKRGTVSAADEVLGYGFVKYTRGFGRKRVVISNDFEAQFLHSSPRTSS-KRQCSQRMSLHF---EKSALETLPQDILIRVLCGLEHGDLKQLFHVSKAIREATLI 112
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Match: A0A067JMY6|A0A067JMY6_JATCU (F-box domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_21355 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.790e-33 Identity = 65/114 (57.02%), Postives = 81/114 (71.05%), Query Frame = 0 Query: 1 MALGQNCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG+ C+S+KSRR EGLG GFV+YTR GRKRILI+N E+ DS ++ LKR C+ + EKS LE+LPQDIL++ILCGV+H+DLKQLFHVS IREA +
Sbjct: 1 MALGRRCNSMKSRRTGIFGEEGLGFGFVKYTRSFGRKRILISNSEDFLPLDSPIQTP-LKRHCNLE------PEKSALESLPQDILVKILCGVDHDDLKQLFHVSTVIREATLV 107
BLAST of CMJ_chr2_005650.3 vs. ExPASy Swiss-Prot
Match: FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.161e-29 Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 0 Query: 1 MALGQ-----NCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG+ +L+ RR + + G GLGL FV+Y RG GRKRILI++G+E DS S K+ C +K + LE LP DIL+RI+CGV HEDLKQLFHVS+ IREA I
Sbjct: 1 MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEME--DSIFTSPVGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMI 117
BLAST of CMJ_chr2_005650.3 vs. ExPASy Swiss-Prot
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 2.725e-19 Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 0 Query: 28 VRYTRGLGRKRILIANGEETSSFDSATK----------SSSLKRQCSE-KMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREA 111
VR+TRGLGRKRILI++ S SA + SSLKRQ S ++ + EKSRLE LPQD+LIR++CGV+HEDLK L VS+ IREA
Sbjct: 63 VRFTRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREA 157
BLAST of CMJ_chr2_005650.3 vs. ExPASy Swiss-Prot
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.418e-18 Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 0 Query: 21 EGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAV 112
E LGLGFVR+TRGLGRKRILI+ + S +KR E +C +S LE L QDILIR+LC V+HEDL L VS+ IR+AV
Sbjct: 17 ERLGLGFVRFTRGLGRKRILISKRAPEND------SPPVKRPSHETTE--SC--RSLLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAV 98
BLAST of CMJ_chr2_005650.3 vs. Araport11
Match: AT1G61340.2 (| F-box family protein | Chr1:22628526-22629741 FORWARD LENGTH=185 | 201606) HSP 1 Score: 106.301 bits (264), Expect = 7.327e-30 Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 0 Query: 1 MALGQ-----NCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG+ +L+ RR + + G GLGL FV+Y RG GRKRILI++G+E DS S K+ C +K + LE LP DIL+RI+CGV HEDLKQLFHVS+ IREA I
Sbjct: 1 MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEME--DSIFTSPVGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMI 117
BLAST of CMJ_chr2_005650.3 vs. Araport11
Match: AT1G61340.1 (| F-box family protein | Chr1:22628526-22629741 FORWARD LENGTH=185 | 201606) HSP 1 Score: 106.301 bits (264), Expect = 7.327e-30 Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 0 Query: 1 MALGQ-----NCSSLKSRRGLASTGEGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAVSI 114
MALG+ +L+ RR + + G GLGL FV+Y RG GRKRILI++G+E DS S K+ C +K + LE LP DIL+RI+CGV HEDLKQLFHVS+ IREA I
Sbjct: 1 MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEME--DSIFTSPVGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMI 117
BLAST of CMJ_chr2_005650.3 vs. Araport11
Match: AT4G21510.2 (| F-box family protein | Chr4:11446435-11447025 REVERSE LENGTH=169 | 201606) HSP 1 Score: 87.0409 bits (214), Expect = 1.842e-22 Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = 0 Query: 28 VRYTRGLGRKRILIANGEETSSFDSATK----------SSSLKRQCSE-KMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAV-SIMINNFSF 121
VR+TRGLGRKRILI++ S SA + SSLKRQ S ++ + EKSRLE LPQD+LIR++CGV+HEDLK L VS+ IREAV SI ++ SF
Sbjct: 63 VRFTRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREAVSSIFSHHLSF 168
BLAST of CMJ_chr2_005650.3 vs. Araport11
Match: AT4G21510.1 (| F-box family protein | Chr4:11446193-11447025 REVERSE LENGTH=225 | 201606) HSP 1 Score: 82.8037 bits (203), Expect = 2.788e-20 Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 0 Query: 28 VRYTRGLGRKRILIANGEETSSFDSATK----------SSSLKRQCSE-KMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREA 111
VR+TRGLGRKRILI++ S SA + SSLKRQ S ++ + EKSRLE LPQD+LIR++CGV+HEDLK L VS+ IREA
Sbjct: 63 VRFTRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREA 157
BLAST of CMJ_chr2_005650.3 vs. Araport11
Match: AT4G05010.1 (| F-box family protein | Chr4:2567474-2568162 FORWARD LENGTH=164 | 201606) HSP 1 Score: 77.411 bits (189), Expect = 9.635e-19 Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 0 Query: 21 EGLGLGFVRYTRGLGRKRILIANGEETSSFDSATKSSSLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREAV 112
E LGLGFVR+TRGLGRKRILI+ + S +KR E +C +S LE L QDILIR+LC V+HEDL L VS+ IR+AV
Sbjct: 17 ERLGLGFVRFTRGLGRKRILISKRAPEND------SPPVKRPSHETTE--SC--RSLLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAV 98 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_005650.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_005650.3 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_005650.3 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_005650.3_cmj_v1 ID=CMJ_chr2_005650.3_cmj_v1; Name=CMJ_chr2_005650.3; organism=Citrus maxima; type=mRNA; length=375bpback to top protein sequence of CMJ_chr2_005650.3_cmj_v1 >CMJ_chr2_005650.3_cmj_v1 ID=CMJ_chr2_005650.3_cmj_v1; Name=CMJ_chr2_005650.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=125bpback to top mRNA from alignment at chr2:3385053..3386956+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1904bp; location=Sequence derived from: chr2:3385053..3386956+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:3385053..3386956+ >CMJ_chr2_005650.3_cmj_v1 ID=CMJ_chr2_005650.3_cmj_v1; Name=CMJ_chr2_005650.3; organism=Citrus maxima; type=CDS; length=375bp; location=Sequence derived from: chr2:3385053..3386956+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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