CMJ_chr2_006640.3
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: V4W7Y3|V4W7Y3_CITCL (PseudoU_synth_2 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10015055mg PE=4 SV=1) HSP 1 Score: 696.041 bits (1795), Expect = 0.000e+0 Identity = 331/334 (99.10%), Postives = 332/334 (99.40%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 334
MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRL+SEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHG EPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV
Sbjct: 136 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 469
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: V4UJ25|V4UJ25_CITCL (PseudoU_synth_2 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10015055mg PE=4 SV=1) HSP 1 Score: 695.271 bits (1793), Expect = 0.000e+0 Identity = 331/334 (99.10%), Postives = 332/334 (99.40%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 334
MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRL+SEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHG EPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV
Sbjct: 154 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 487
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: V4TP67|V4TP67_CITCL (PseudoU_synth_2 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10015055mg PE=4 SV=1) HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0 Identity = 331/334 (99.10%), Postives = 332/334 (99.40%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 334
MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRL+SEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHG EPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV
Sbjct: 59 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 392
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: V4UDR0|V4UDR0_CITCL (PseudoU_synth_2 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10015055mg PE=4 SV=1) HSP 1 Score: 691.804 bits (1784), Expect = 0.000e+0 Identity = 331/334 (99.10%), Postives = 332/334 (99.40%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 334
MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRL+SEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHG EPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV
Sbjct: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 334
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: A0A067GA56|A0A067GA56_CITSI (PseudoU_synth_2 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g011530mg PE=4 SV=1) HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0 Identity = 329/334 (98.50%), Postives = 329/334 (98.50%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 334
MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT APLPVGIMTHYMRPINIAPRLVSE GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV
Sbjct: 154 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE----GWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 483
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: A0A2H5N1M4|A0A2H5N1M4_CITUN (PseudoU_synth_2 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_009940 PE=4 SV=1) HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0 Identity = 322/325 (99.08%), Postives = 323/325 (99.38%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 325
MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVI+WISQHG EPSVAIGLQACHISWDDGECCYEARSPWWR
Sbjct: 59 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIKWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 383
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: A0A2H5N3I7|A0A2H5N3I7_CITUN (PseudoU_synth_2 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_009940 PE=4 SV=1) HSP 1 Score: 672.159 bits (1733), Expect = 0.000e+0 Identity = 322/325 (99.08%), Postives = 323/325 (99.38%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 325
MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVI+WISQHG EPSVAIGLQACHISWDDGECCYEARSPWWR
Sbjct: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIKWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 325
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: A0A6P5WYA3|A0A6P5WYA3_DURZI (RNA pseudouridine synthase 6, chloroplastic-like OS=Durio zibethinus OX=66656 GN=LOC111278259 PE=4 SV=1) HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0 Identity = 274/327 (83.79%), Postives = 307/327 (93.88%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCK 327
+R+FKEVT+PSVL KR+SIKGKTVREAQKTFRITH DQ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVT+S+VVLDKPAGTSVGGTTDNIEESC TFA+RALG +TPL+TTHQIDNCTEGCVVLART+EYCS+FH KIREKKVKKLYLALTAAP+P+G++THYMRPINIAPRLVSEDFIKGWYLCQLEVMECK+VPWPD+++ + Y IED GWPS+D+AYECKI LLTGRTHQVRAQLAACGAPIVGDSMYMPAAIA++++PGLNPFGKC+K Y SD+DKEMA+ EWI+Q+G EPSVAIGLQAC ISWDDGE YEARSPWWR +
Sbjct: 152 IRIFKEVTEPSVLRKRASIKGKTVREAQKTFRITHADQFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCVTFATRALGFSTPLKTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPVPIGLITHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKEVPWPDSSIQENYCIEDSGWPSKDHAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAEVANPGLNPFGKCKK-YTSDNDKEMAITEWIAQYGKEPSVAIGLQACQISWDDGEHFYEARSPWWRSR 477
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: A0A5C7GRJ4|A0A5C7GRJ4_9ROSI (PseudoU_synth_2 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_026371 PE=4 SV=1) HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0 Identity = 268/327 (81.96%), Postives = 303/327 (92.66%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCK 327
+R+FKEVT PSV+ KR+S+KGKT+REAQKTFRIT VDQ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTES+V+LDKPAGTSVGGT+DNIEESCATFA+RAL LT PL TTHQIDNCTEGCVVLART+EYCS+FH KIREKKVKKLYLAL A+PLPVG++THYMRP+NIAPRLVSEDF+KGW LCQLEV+ECK+V WPD++V + Y +EDCGWPS+DYAYECKI LLTGRTHQ+RAQLAACGAPIVGDSMYMPAAIA++SSPGLNP+G +K+YA++DDKEMA+ EWISQHG EPSVA+GLQAC ISWDDGE YEA SPWWRCK
Sbjct: 157 IRIFKEVTAPSVVKKRASVKGKTIREAQKTFRITRVDQFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVILDKPAGTSVGGTSDNIEESCATFATRALELTDPLYTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAASPLPVGLITHYMRPVNIAPRLVSEDFVKGWQLCQLEVLECKEVLWPDSSVEEIYRVEDCGWPSKDYAYECKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEMSSPGLNPYGNRKKQYATEDDKEMAITEWISQHGKEPSVAVGLQACQISWDDGEHFYEAGSPWWRCK 483
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Match: A0A1R3I2E3|A0A1R3I2E3_COCAP (Pseudouridine synthase, RsuA/RluB/C/D/E/F OS=Corchorus capsularis OX=210143 GN=CCACVL1_15445 PE=4 SV=1) HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0 Identity = 269/327 (82.26%), Postives = 302/327 (92.35%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCK 327
+++FKEVT PSVLSKR+SIKGKTVREAQKTFRITHVDQ VEAGTYLRVHVHPKRFPRCY IDW SRIIAVT+S+VVLDKPAGTSVGGTTDNIEESCATFA+RALG + PL+TTHQIDNCTEGCVV ART+EYCS+FH KIREKKVKKLYLAL AAP+P GI+THYMRPIN+APRLVSEDFIKGWYLCQLEV+ECK+VPWPD+ V + Y IED GWPS+DYAYECKI LLTGRTHQ+RAQLAACGAPIVGDSMYMPA IA++++PGLNPFGK K+Y ++DDKE+A+ EWI+Q+G EPSVAIGLQAC ISWD+GE CYEARSPWWR +
Sbjct: 150 VKIFKEVTAPSVLSKRASIKGKTVREAQKTFRITHVDQFVEAGTYLRVHVHPKRFPRCYAIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSIPLKTTHQIDNCTEGCVVFARTKEYCSVFHGKIREKKVKKLYLALAAAPVPTGIITHYMRPINMAPRLVSEDFIKGWYLCQLEVLECKEVPWPDSVVQENYCIEDSGWPSKDYAYECKINLLTGRTHQIRAQLAACGAPIVGDSMYMPATIAEMANPGLNPFGK-YKKYTTEDDKEIAIKEWIAQYGKEPSVAIGLQACQISWDEGEHCYEARSPWWRLR 475
BLAST of CMJ_chr2_006640.3 vs. ExPASy Swiss-Prot
Match: PUS6_ARATH (RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g21770 PE=2 SV=1) HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0 Identity = 241/326 (73.93%), Postives = 281/326 (86.20%), Query Frame = 0 Query: 3 VFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDD-KEMAVIEWISQHGMEPSVAIGLQACHISW--DDGECCYEARSPWWR 325
+F+EVT PSVL KRSSIKGKTVREAQKTFR+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDNIEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY AL AAPLP+GI++HYMRP N+APRLV+ED I+GW+LCQLEV+ECKK+PWPDA K + IEDCGW S+++AYEC I LLTG+THQ+RAQLAACGAP+VGDSMYMPAAIA++ +P NP+GK +K Y +++ KE AV EWI +HG EP V IGLQAC ISW DDGE YEA +PWWR
Sbjct: 147 LFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472
BLAST of CMJ_chr2_006640.3 vs. ExPASy Swiss-Prot
Match: PUS6_ORYSJ (RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0660400 PE=2 SV=1) HSP 1 Score: 475.322 bits (1222), Expect = 1.668e-166 Identity = 221/327 (67.58%), Postives = 269/327 (82.26%), Query Frame = 0 Query: 1 MRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWD-DGE-CCYEARSPWWR 325
+R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGTYLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRALGL TPL TTHQIDNC+EGCVVL++T+E+CS+FH IREK+V K YLALT AP+ GI+THYMRPIN APRLVSED IKGW++CQ+E+++CKKVPWP + + K + +++CGWP ++ AYECKI LLTG+THQ+RAQLAA G PIVGDS YM AA+A + +P +NPFG+ + Y S+D+K AV WIS HG EP IGLQA ISWD +GE Y+A PWWR
Sbjct: 142 VRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIITHYMRPINRAPRLVSEDHIKGWHVCQMEILDCKKVPWPSSLIRKVHKVDNCGWPQQEAAYECKINLLTGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNYDSEDEKAAAVEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAGVPWWR 468
BLAST of CMJ_chr2_006640.3 vs. Araport11
Match: AT4G21770.1 (| Pseudouridine synthase family protein | Chr4:11564028-11566345 REVERSE LENGTH=472 | 201606) HSP 1 Score: 523.087 bits (1346), Expect = 0.000e+0 Identity = 241/326 (73.93%), Postives = 281/326 (86.20%), Query Frame = 0 Query: 3 VFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDD-KEMAVIEWISQHGMEPSVAIGLQACHISW--DDGECCYEARSPWWR 325
+F+EVT PSVL KRSSIKGKTVREAQKTFR+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDNIEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY AL AAPLP+GI++HYMRP N+APRLV+ED I+GW+LCQLEV+ECKK+PWPDA K + IEDCGW S+++AYEC I LLTG+THQ+RAQLAACGAP+VGDSMYMPAAIA++ +P NP+GK +K Y +++ KE AV EWI +HG EP V IGLQAC ISW DDGE YEA +PWWR
Sbjct: 147 LFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472
BLAST of CMJ_chr2_006640.3 vs. Araport11
Match: AT4G21770.2 (| Pseudouridine synthase family protein | Chr4:11564028-11566031 REVERSE LENGTH=393 | 201606) HSP 1 Score: 519.62 bits (1337), Expect = 0.000e+0 Identity = 241/326 (73.93%), Postives = 281/326 (86.20%), Query Frame = 0 Query: 3 VFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPINIAPRLVSEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDD-KEMAVIEWISQHGMEPSVAIGLQACHISW--DDGECCYEARSPWWR 325
+F+EVT PSVL KRSSIKGKTVREAQKTFR+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDNIEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY AL AAPLP+GI++HYMRP N+APRLV+ED I+GW+LCQLEV+ECKK+PWPDA K + IEDCGW S+++AYEC I LLTG+THQ+RAQLAACGAP+VGDSMYMPAAIA++ +P NP+GK +K Y +++ KE AV EWI +HG EP V IGLQAC ISW DDGE YEA +PWWR
Sbjct: 68 LFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 393 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_006640.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_006640.3 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_006640.3 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_006640.3_cmj_v1 ID=CMJ_chr2_006640.3_cmj_v1; Name=CMJ_chr2_006640.3; organism=Citrus maxima; type=mRNA; length=1005bpback to top protein sequence of CMJ_chr2_006640.3_cmj_v1 >CMJ_chr2_006640.3_cmj_v1 ID=CMJ_chr2_006640.3_cmj_v1; Name=CMJ_chr2_006640.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=335bpback to top mRNA from alignment at chr2:4101556..4105644- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=4089bp; location=Sequence derived from: chr2:4101556..4105644- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:4101556..4105644- >CMJ_chr2_006640.3_cmj_v1 ID=CMJ_chr2_006640.3_cmj_v1; Name=CMJ_chr2_006640.3; organism=Citrus maxima; type=CDS; length=1005bp; location=Sequence derived from: chr2:4101556..4105644- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|