CMJ_chr2_008860.1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A067GFF9|A0A067GFF9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034624mg PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.867e-53 Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0 Query: 1 MQGEATKGVCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS 89
MQGEATKG CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESE+VRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS
Sbjct: 1 MQGEATKGGCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESESVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS 89
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A2H5N257|A0A2H5N257_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_007500 PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.542e-52 Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0 Query: 1 MQGEATKGVCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS 89
MQGEATKG C RLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS
Sbjct: 1 MQGEATKGGCGRLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS 89
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: V4W734|V4W734_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017318mg PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.542e-52 Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0 Query: 1 MQGEATKGVCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS 89
MQGEATKG C RLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS
Sbjct: 1 MQGEATKGGCGRLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSSRSS 89
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A1U8QBT4|A0A1U8QBT4_NELNU (uncharacterized protein LOC104611017 OS=Nelumbo nucifera OX=4432 GN=LOC104611017 PE=4 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.152e-36 Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 0 Query: 2 QGEATKGV--CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSS 86
QG+ T V CERLHRALCECH+RV GP RE CRHLNR+LA+CLV+ CP ESEAVRS CSS GT+LKRSQCQQAQLALSVCLSS
Sbjct: 5 QGDETMSVAGCERLHRALCECHRRVPPGPPREVACRHLNRSLADCLVSLVCPAESEAVRSLCSSSGTSLKRSQCQQAQLALSVCLSS 91
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A2G9HAR3|A0A2G9HAR3_9LAMI (COX assembly mitochondrial protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12753 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.618e-35 Identity = 60/76 (78.95%), Postives = 70/76 (92.11%), Query Frame = 0 Query: 10 CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLS 85
CERL+RAL ECH+R+ +GP+RE+ CRHLNR+LA+CLVA ACPEES+AVRS CSSGGTALKR QCQQAQL+LSVCLS
Sbjct: 18 CERLYRALTECHRRIPAGPSREAACRHLNRSLAQCLVAVACPEESDAVRSLCSSGGTALKRRQCQQAQLSLSVCLS 93
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A7J7C4W4|A0A7J7C4W4_TRIWF (COX assembly mitochondrial protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01358 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 7.572e-35 Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 0 Query: 1 MQGEATKGVCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSS 86
+ G T+ C RLH+AL +CH+R+ +GP RES CRHLN+ALA+CLV+ ACPEE EAVR+ C+SGGTALKRSQCQQAQ++L+VCLSS
Sbjct: 3 LNGAVTRDGCGRLHQALSDCHRRIPAGPGRESTCRHLNQALAQCLVSQACPEEFEAVRTLCASGGTALKRSQCQQAQVSLAVCLSS 88
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A2I0IDA4|A0A2I0IDA4_PUNGR (uncharacterized protein LOC116202259 OS=Punica granatum OX=22663 GN=LOC116202259 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.170e-34 Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 0 Query: 8 GVCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSS 86
G C+RLH+ALCECH+RV +G RE CRHLN+ALA CLV++ACP+ESEAVRS C+SGGTALKRSQCQQAQLALSVC+SS
Sbjct: 4 GPCDRLHQALCECHRRVPAGIDREIACRHLNQALALCLVSEACPQESEAVRSLCASGGTALKRSQCQQAQLALSVCISS 82
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A6N2KX77|A0A6N2KX77_SALVM (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS147661 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.399e-34 Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 0 Query: 10 CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSS 86
CERLH+AL +CH+RV +G RE+ CRHLNRALAEC+VA CP+ESEAVRS CSSGGT LKRSQCQ+AQLALSVCLSS
Sbjct: 7 CERLHKALYDCHRRVPAGTGRETACRHLNRALAECMVAAVCPDESEAVRSLCSSGGTNLKRSQCQEAQLALSVCLSS 83
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A5N5K153|A0A5N5K153_9ROSI (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_023068 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.495e-34 Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 0 Query: 10 CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSS 86
CERLH+AL +CH+RV +G RE+ CRHLNRALAEC+VA CP+ESEAVRS CSSGGT LKRSQCQ+AQLALSVCLSS
Sbjct: 7 CERLHKALYDCHRRVPAGTGRETACRHLNRALAECMVAAVCPDESEAVRSLCSSGGTKLKRSQCQEAQLALSVCLSS 83
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Match: A0A2K1XLX5|A0A2K1XLX5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G121500 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.632e-34 Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 0 Query: 10 CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLSS 86
CERLH+AL +CH+RV +G RE+ CRHLNRALAEC+VA CP+ESEAVRS CSSGGT LKRSQCQ+AQLALSVCLSS
Sbjct: 7 CERLHKALYDCHRRVPAGTGRETACRHLNRALAECMVAVVCPDESEAVRSLCSSGGTKLKRSQCQEAQLALSVCLSS 83
BLAST of CMJ_chr2_008860.1 vs. Araport11
Match: AT1G31175.2 (| cytochrome C oxidase biogenesis Cmc1-like protein | Chr1:11140549-11140905 FORWARD LENGTH=118 | 201606) HSP 1 Score: 113.62 bits (283), Expect = 4.902e-34 Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 0 Query: 10 CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLS 85
C+RL AL +CH+R+ GPAR S CRHLN+A AEC+VA+ACPEESEAVRS CSSGGT+LKR QC+ AQL+LS+CLS
Sbjct: 34 CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLKRKQCEYAQLSLSLCLS 109
BLAST of CMJ_chr2_008860.1 vs. Araport11
Match: AT1G31175.1 (| cytochrome C oxidase biogenesis Cmc1-like protein | Chr1:11140549-11140905 FORWARD LENGTH=118 | 201606) HSP 1 Score: 113.62 bits (283), Expect = 4.902e-34 Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 0 Query: 10 CERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTALKRSQCQQAQLALSVCLS 85
C+RL AL +CH+R+ GPAR S CRHLN+A AEC+VA+ACPEESEAVRS CSSGGT+LKR QC+ AQL+LS+CLS
Sbjct: 34 CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLKRKQCEYAQLSLSLCLS 109 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_008860.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_008860.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_008860.1_cmj_v1 ID=CMJ_chr2_008860.1_cmj_v1; Name=CMJ_chr2_008860.1; organism=Citrus maxima; type=mRNA; length=270bpback to top protein sequence of CMJ_chr2_008860.1_cmj_v1 >CMJ_chr2_008860.1_cmj_v1 ID=CMJ_chr2_008860.1_cmj_v1; Name=CMJ_chr2_008860.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=90bpback to top mRNA from alignment at chr2:5726661..5727611+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=951bp; location=Sequence derived from: chr2:5726661..5727611+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:5726661..5727611+ >CMJ_chr2_008860.1_cmj_v1 ID=CMJ_chr2_008860.1_cmj_v1; Name=CMJ_chr2_008860.1; organism=Citrus maxima; type=CDS; length=270bp; location=Sequence derived from: chr2:5726661..5727611+ (Citrus maximaback to top |