CMJ_chr2_008900.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr2_008900.1
Unique Name	CMJ_chr2_008900.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	183

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmcmjL130	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcmmR100	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL124	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caacmjL264	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cmhcmjL083	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcraR160	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR182	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cgacmjL107	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL488	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL115	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL477	Citrus glauca genome v1.0 (UQ)	Citrus glauca

Orthologs


Gene/Transcript	Assembly	Species
hap2-g5251.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
hap1-g5190.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
Cms256870.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
g6856.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
g5715.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
Egl214710.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
hap1-g5098.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
hap2-g5973.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cg2g037790.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
Cmt168450.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr2_008900	CMJ_chr2_008900_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_008900.1.exon1	CMJ_chr2_008900.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_008900.1.cds.1	CMJ_chr2_008900.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr2_008900.1_cmj_v1	CMJ_chr2_008900.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr2_008900.1_cmj_v1	CMJ_chr2_008900.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr2_008900.1 vs.
BLAST of CMJ_chr2_008900.1 vs.
BLAST of CMJ_chr2_008900.1 vs.

BLAST of CMJ_chr2_008900.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr2_008900.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr2_008900.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:5764965..5765147+
coding sequence from alignment at chr2:5764965..5765147+

mRNA sequence

>CMJ_chr2_008900.1_cmj_v1 ID=CMJ_chr2_008900.1_cmj_v1; Name=CMJ_chr2_008900.1; organism=Citrus maxima; type=mRNA; length=183bp
ATGATTCCAAGGACGACTGCGATGATTGCGGCAAAGGAATCTGCTTCTTA
TTGTCAGAAAGGGACGCATGTTTGTACTGAAATTATGATCTCAGACGCCG
AAGGGGATGGAGATGAATTGCGAATAGGGCAAGAACTGATGCTAACACCC
TCACCCTGCAGCATGTTGAACTGGACAAAGTGA

protein sequence of CMJ_chr2_008900.1_cmj_v1

>CMJ_chr2_008900.1_cmj_v1 ID=CMJ_chr2_008900.1_cmj_v1; Name=CMJ_chr2_008900.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=61bp
MIPRTTAMIAAKESASYCQKGTHVCTEIMISDAEGDGDELRIGQELMLTP
SPCSMLNWTK*

mRNA from alignment at chr2:5764965..5765147+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=183bp; location=Sequence derived from: chr2:5764965..5765147+ (Citrus maxima
ATGATTCCAAGGACGACTGCGATGATTGCGGCAAAGGAATCTGCTTCTTA
TTGTCAGAAAGGGACGCATGTTTGTACTGAAATTATGATCTCAGACGCCG
AAGGGGATGGAGATGAATTGCGAATAGGGCAAGAACTGATGCTAACACCC
TCACCCTGCAGCATGTTGAACTGGACAAAGTGA

Coding sequence (CDS) from alignment at chr2:5764965..5765147+

>CMJ_chr2_008900.1_cmj_v1 ID=CMJ_chr2_008900.1_cmj_v1; Name=CMJ_chr2_008900.1; organism=Citrus maxima; type=CDS; length=183bp; location=Sequence derived from: chr2:5764965..5765147+ (Citrus maxima
ATGATTCCAAGGACGACTGCGATGATTGCGGCAAAGGAATCTGCTTCTTA
TTGTCAGAAAGGGACGCATGTTTGTACTGAAATTATGATCTCAGACGCCG
AAGGGGATGGAGATGAATTGCGAATAGGGCAAGAACTGATGCTAACACCC
TCACCCTGCAGCATGTTGAACTGGACAAAGTGA