CMJ_chr2_012660.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: V4UBC4|V4UBC4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016943mg PE=4 SV=1) HSP 1 Score: 355.14 bits (910), Expect = 9.047e-124 Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0 Query: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPR SQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMV+FKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM
Sbjct: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVIFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A2H5Q2Y1|A0A2H5Q2Y1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_190740 PE=4 SV=1) HSP 1 Score: 362.459 bits (929), Expect = 4.835e-116 Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0 Query: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPR SQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLI+
Sbjct: 867 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLII 1038
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: V4UGM5|V4UGM5_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016943mg PE=4 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 4.533e-92 Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 0 Query: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVV 139
MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPR SQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSS +L+ +
Sbjct: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSSIDLLLFL 139
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A067FMC9|A0A067FMC9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0304701mg PE=4 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 2.163e-88 Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 0 Query: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVV 139
MSCLSCCHYITRASL DNTTPSS SHQTSNSNKPPVPKTKPTKIPR SQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSS +L+ +
Sbjct: 1 MSCLSCCHYITRASLIDNTTPSS-SHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSSIDLLLFL 138
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A067FB78|A0A067FB78_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0304701mg PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 4.696e-88 Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0 Query: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSS 131
MSCLSCCHYITRASL DNTTPSS SHQTSNSNKPPVPKTKPTKIPR SQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSS
Sbjct: 1 MSCLSCCHYITRASLIDNTTPSS-SHQTSNSNKPPVPKTKPTKIPRKSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSS 130
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A5D2W883|A0A5D2W883_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D01G176800v1 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.065e-46 Identity = 89/184 (48.37%), Postives = 114/184 (61.96%), Query Frame = 0 Query: 1 MSCLSC-CHYITRA---------SLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQE--KITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
M+CLSC C I A SLTD +P Q + +N P T+P K + +QQ P P S++QIERAI AG+FRDA+ DL+++ K ++G+LP G FEG +EK++RETGEW +E RSS K IL+VV +WILP+WT SLLVASGVIKLPFS P +DDLIM
Sbjct: 1 MACLSCSCISIAMAKAVIHPPIASLTDKPSP-----QETQTNSKPKTATRPRKKRQRLRQQKPHP--------PPSIVQIERAIGAGSFRDADSSDLEEQRRKTIFDGLLPVTGGKFEGDIEKKLRETGEWIGTTTEATFRSSGKTILLVVLQWILPIWTFSLLVASGVIKLPFSTPLIDDLIM 171
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A5J5SRX4|A0A5J5SRX4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G169600v1 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.065e-46 Identity = 89/184 (48.37%), Postives = 114/184 (61.96%), Query Frame = 0 Query: 1 MSCLSC-CHYITRA---------SLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQE--KITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
M+CLSC C I A SLTD +P Q + +N P T+P K + +QQ P P S++QIERAI AG+FRDA+ DL+++ K ++G+LP G FEG +EK++RETGEW +E RSS K IL+VV +WILP+WT SLLVASGVIKLPFS P +DDLIM
Sbjct: 1 MACLSCSCISIAMAKAVIHPPIASLTDKPSP-----QETQTNSKPKTATRPRKKRQRLRQQKPHP--------PPSIVQIERAIGAGSFRDADSSDLEEQRRKTIFDGLLPVTGGKFEGDIEKKLRETGEWIGTTTEATFRSSGKTILLVVLQWILPIWTFSLLVASGVIKLPFSTPLIDDLIM 171
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A5D2MAY9|A0A5D2MAY9_GOSTO (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G185800v1 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.065e-46 Identity = 89/184 (48.37%), Postives = 114/184 (61.96%), Query Frame = 0 Query: 1 MSCLSC-CHYITRA---------SLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQE--KITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
M+CLSC C I A SLTD +P Q + +N P T+P K + +QQ P P S++QIERAI AG+FRDA+ DL+++ K ++G+LP G FEG +EK++RETGEW +E RSS K IL+VV +WILP+WT SLLVASGVIKLPFS P +DDLIM
Sbjct: 1 MACLSCSCISIAMAKAVIHPPIASLTDKPSP-----QETQTNSKPKTATRPRKKRQRLRQQKPHP--------PPSIVQIERAIGAGSFRDADSSDLEEQRRKTIFDGLLPVTGGKFEGDIEKKLRETGEWIGTTTEATFRSSGKTILLVVLQWILPIWTFSLLVASGVIKLPFSTPLIDDLIM 171
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A5D2DR39|A0A5D2DR39_GOSDA (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G183100v1 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.787e-45 Identity = 88/184 (47.83%), Postives = 113/184 (61.41%), Query Frame = 0 Query: 1 MSCLSC-CHYITRA---------SLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQE--KITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
M+CLSC C I A SLTD +P Q + +N P T+P K + +QQ P S++QIERAI AG+FRDA+ DL+++ K ++G+LP G FEG +EK++RETGEW +E RSS K IL+VV +WILP+WT SLLVASGVIKLPFS P +DDLIM
Sbjct: 1 MACLSCSCISIAMAKAVIHPPIASLTDKPSP-----QETQTNSKPKTATRPRKKRQRLRQQKAHP--------PPSIVQIERAIGAGSFRDADSSDLEEQRRKTIFDGLLPVTGGKFEGDIEKKLRETGEWIGTTTEATFRSSGKTILLVVLQWILPIWTFSLLVASGVIKLPFSTPLIDDLIM 171
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Match: A0A0F7CZ71|A0A0F7CZ71_9ROSI (Chlororespiratory reduction 3 OS=Francoa sonchifolia OX=23250 GN=CRR3 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 8.489e-44 Identity = 80/185 (43.24%), Postives = 114/185 (61.62%), Query Frame = 0 Query: 1 MSCLSCCHYITRASLTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQD-------------KSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
+S +S + ASL DN++P P P P IP ++ LP +KQ+ + +Q +++QIERAI G FRD++P+DL++ +NG+L + S FEGPVEK++RETGEW + +E S+ KGIL+V+F W LP+WT++LLV +GVIKLPFS+PFLDDLIM
Sbjct: 4 LSTMSIAKTLALASLPDNSSP-------------PKPNPTPITIPNSN-----LPTKKQNLKQRQRQRQQQQQQPEQPTIIQIERAIGTGMFRDSDPRDLEERSTVFNGLLSNPSDKFEGPVEKKLRETGEWLVEKTERGSASTGKGILVVLFLWFLPIWTVALLVVTGVIKLPFSIPFLDDLIM 170
BLAST of CMJ_chr2_012660.1 vs. ExPASy Swiss-Prot
Match: CRR3_ARATH (Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR3 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.138e-35 Identity = 76/178 (42.70%), Postives = 108/178 (60.67%), Query Frame = 0 Query: 1 MSCLSCCHYITRAS------LTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
M+ LS + ITRAS LT+++ S S P P KP K+ R +QM +Q + + S+ QIERA +G++RD+E ++D + ++ +L + FE +EK++RE GE F +E +LRSS K +LM +WILP+W +SLLVA GVIKLPFS+PFLDDLIM
Sbjct: 1 MAVLSTIYSITRASTPTMASLTNDSPSPLPSSSPSKLPSPTSPSKKPLKL-RQVSKQMG-SQNQQRRGNKPSIAQIERAFGSGSYRDSE-GEMDMNTV-FDELLLGHANKFESKIEKKLREIGEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACGVIKLPFSIPFLDDLIM 174
BLAST of CMJ_chr2_012660.1 vs. Araport11
Match: AT2G01590.1 (| chlororespiratory reduction 3 | Chr2:266675-267379 FORWARD LENGTH=174 | 201606) HSP 1 Score: 122.865 bits (307), Expect = 9.349e-36 Identity = 76/178 (42.70%), Postives = 108/178 (60.67%), Query Frame = 0 Query: 1 MSCLSCCHYITRAS------LTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
M+ LS + ITRAS LT+++ S S P P KP K+ R +QM +Q + + S+ QIERA +G++RD+E ++D + ++ +L + FE +EK++RE GE F +E +LRSS K +LM +WILP+W +SLLVA GVIKLPFS+PFLDDLIM
Sbjct: 1 MAVLSTIYSITRASTPTMASLTNDSPSPLPSSSPSKLPSPTSPSKKPLKL-RQVSKQMG-SQNQQRRGNKPSIAQIERAFGSGSYRDSE-GEMDMNTV-FDELLLGHANKFESKIEKKLREIGEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACGVIKLPFSIPFLDDLIM 174
BLAST of CMJ_chr2_012660.1 vs. Araport11
Match: AT2G01590.2 (| chlororespiratory reduction 3 | Chr2:266675-267483 FORWARD LENGTH=174 | 201606) HSP 1 Score: 121.324 bits (303), Expect = 3.908e-35 Identity = 75/178 (42.13%), Postives = 108/178 (60.67%), Query Frame = 0 Query: 1 MSCLSCCHYITRAS------LTDNTTPSSTSHQTSNSNKPPVPKTKPTKIPRNSQQQMPLPMQKQDKSKQHSVMQIERAISAGTFRDAEPKDLDQEKITYNGILPDLSGMFEGPVEKQIRETGEWFAKNSEERLRSSRKGILMVVFKWILPMWTLSLLVASGVIKLPFSMPFLDDLIM 172
M+ LS + ITRAS LT+++ S S P P KP K+ R +QM +Q + + S+ QIERA +G++RD+E ++D + ++ +L + FE +EK++RE GE F +E +LRSS K +LM +WILP+W +SLLVA GVIKLPFS+PFLDDLI+
Sbjct: 1 MAVLSTIYSITRASTPTMASLTNDSPSPLPSSSPSKLPSPTSPSKKPLKL-RQVSKQMG-SQNQQRRGNKPSIAQIERAFGSGSYRDSE-GEMDMNTV-FDELLLGHANKFESKIEKKLREIGEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACGVIKLPFSIPFLDDLII 174 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_012660.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_012660.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_012660.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_012660.1_cmj_v1 ID=CMJ_chr2_012660.1_cmj_v1; Name=CMJ_chr2_012660.1; organism=Citrus maxima; type=mRNA; length=519bpback to top protein sequence of CMJ_chr2_012660.1_cmj_v1 >CMJ_chr2_012660.1_cmj_v1 ID=CMJ_chr2_012660.1_cmj_v1; Name=CMJ_chr2_012660.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=173bpback to top mRNA from alignment at chr2:8205078..8208140+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3063bp; location=Sequence derived from: chr2:8205078..8208140+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:8205078..8208140+ >CMJ_chr2_012660.1_cmj_v1 ID=CMJ_chr2_012660.1_cmj_v1; Name=CMJ_chr2_012660.1; organism=Citrus maxima; type=CDS; length=519bp; location=Sequence derived from: chr2:8205078..8208140+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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