CMJ_chr2_014460.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: A0A067EXB9|A0A067EXB9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g035592mg PE=4 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 3.254e-50 Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0 Query: 1 MSFLNKATAISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGK 84 MSFLNKATAISQKTLDELVN QSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDV+ GK Sbjct: 1 MSFLNKATAISQKTLDELVNFQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVTSGK 84
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: A0A2H5PH01|A0A2H5PH01_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_135730 PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 4.637e-50 Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0 Query: 1 MSFLNKATAISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGK 84 MSFLNKATAISQKTLDELVN QSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDV+ GK Sbjct: 1 MSFLNKATAISQKTLDELVNFQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVTSGK 84
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: V4UG03|V4UG03_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018166mg PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 4.637e-50 Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0 Query: 1 MSFLNKATAISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGK 84 MSFLNKATAISQKTLDELVN QSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDV+ GK Sbjct: 1 MSFLNKATAISQKTLDELVNFQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVTSGK 84
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: A0A2H5PH04|A0A2H5PH04_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_135710 PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 6.922e-50 Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0 Query: 6 KATAISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACF 97 +A AISQK LDE VNL SSS KEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLS ASRNQRSL+GRPECDPDV LGKRLILYEVIS ACF Sbjct: 7 EAMAISQKALDEPVNLLSSSKKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSLASRNQRSLDGRPECDPDVGLGKRLILYEVISFACF 98
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: V4U5M5|V4U5M5_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016664mg PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 6.922e-50 Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0 Query: 6 KATAISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACF 97 +A AISQK LDE VNL SSS KEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLS ASRNQRSL+GRPECDPDV LGKRLILYEVIS ACF Sbjct: 7 EAMAISQKALDEPVNLLSSSKKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSLASRNQRSLDGRPECDPDVGLGKRLILYEVISFACF 98
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: A0A067ETV9|A0A067ETV9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042299mg PE=4 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.229e-48 Identity = 80/89 (89.89%), Postives = 81/89 (91.01%), Query Frame = 0 Query: 9 AISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACF 97 AISQK LDE VNL SSS KEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLS ASRNQRSL+GRPECDPDV LGKRLILYE IS ACF Sbjct: 2 AISQKALDEPVNLLSSSKKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSLASRNQRSLDGRPECDPDVGLGKRLILYEAISFACF 90
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: A0A2H5PH02|A0A2H5PH02_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_135720 PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.336e-47 Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = 0 Query: 5 NKATAISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACF 97 ++ATAISQKTLDELVNL SSSNK DI DDIIDVHLKALDDLVNVNSLFTIAVFVGLS ASR+QRSL+ R ECDPDVS+GKRLILYEVIS ACF Sbjct: 6 SEATAISQKTLDELVNLLSSSNKGDICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSLASRDQRSLDDRLECDPDVSVGKRLILYEVISFACF 98
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: V4UAQ1|V4UAQ1_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10018250mg PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.725e-47 Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = 0 Query: 5 NKATAISQKTLDELVNLQSSSNKEDIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACF 97 ++ATAISQKTLDELVNL SSSNK DI DDIIDVHLKALDDLVNVNSLFTIAVFVGLS ASR+QRSL+ R ECDPDVS+GKRLILYEVIS ACF Sbjct: 3 SEATAISQKTLDELVNLLSSSNKGDICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSLASRDQRSLDDRLECDPDVSVGKRLILYEVISFACF 95
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: A0A067ETN5|A0A067ETN5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g035528mg PE=4 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.118e-41 Identity = 72/80 (90.00%), Postives = 76/80 (95.00%), Query Frame = 0 Query: 29 DIYDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACFLLSSLCSKSLK 108 DI DDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASR+QRSL+ R ECDPDVS+GKRLILYEVIS ACFL+SSLCSKSLK Sbjct: 1 DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFACFLMSSLCSKSLK 80
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Match: A0A5C7IIE3|A0A5C7IIE3_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003211 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.097e-35 Identity = 72/122 (59.02%), Postives = 93/122 (76.23%), Query Frame = 0 Query: 5 NKATAISQKTLDELVNLQSSSNKEDIYDDI---IDVHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACFLLSSLCSKSLKSTHQLGKIQGKDQSQ 123 NKA + QKTL++LV ++ S+K+D D I I+VH KALDDLVNVN LFT+AVFVGL++A+ +QRSLE RPEC+PD LGKRLI+YEV S ACFL SSL +KS+K L I+ K+Q++ Sbjct: 17 NKAVEMLQKTLEKLV--EALSSKKDNTDKINACIEVHQKALDDLVNVNCLFTLAVFVGLAYANPSQRSLESRPECNPDPGLGKRLIIYEVNSFACFLFSSLVAKSIKV---LVNIRKKEQTR 133
BLAST of CMJ_chr2_014460.1 vs. Araport11
Match: AT3G07510.2 (| maternal effect embryo arrest protein | Chr3:2393895-2394464 REVERSE LENGTH=189 | 201606) HSP 1 Score: 71.633 bits (174), Expect = 3.865e-16 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0 Query: 37 VHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYE 90 VH+ ALD LVNVNSLFTIAVFVGLS A+ Q SLE R CD + K+L+++E Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFE 79
BLAST of CMJ_chr2_014460.1 vs. Araport11
Match: AT3G07510.1 (| maternal effect embryo arrest protein | Chr3:2393895-2394464 REVERSE LENGTH=189 | 201606) HSP 1 Score: 71.633 bits (174), Expect = 3.865e-16 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0 Query: 37 VHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYE 90 VH+ ALD LVNVNSLFTIAVFVGLS A+ Q SLE R CD + K+L+++E Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFE 79
BLAST of CMJ_chr2_014460.1 vs. Araport11
Match: AT3G07510.3 (| maternal effect embryo arrest protein | Chr3:2393895-2394575 REVERSE LENGTH=199 | 201606) HSP 1 Score: 71.2478 bits (173), Expect = 5.716e-16 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0 Query: 37 VHLKALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYE 90 VH+ ALD LVNVNSLFTIAVFVGLS A+ Q SLE R CD + K+L+++E Sbjct: 36 VHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFE 89
BLAST of CMJ_chr2_014460.1 vs. Araport11
Match: AT5G05950.1 (| maternal effect embryo arrest 60 | Chr5:1788814-1789341 FORWARD LENGTH=175 | 201606) HSP 1 Score: 65.855 bits (159), Expect = 4.588e-14 Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 0 Query: 36 DVHLKALDDLVNVNSLFTIAVFVGLSFASRNQ-RSLEGRPECDPDVSLGKRLILYEVISVACFLLSSLCSKSLKSTHQL 113 +H+ ALD +VNVNSLFT+AVF+GL++ + SL P C P + + L+ + V S A FL SSL + LK +L Sbjct: 4 SIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVYSFASFLFSSLIALGLKQAMRL 82
BLAST of CMJ_chr2_014460.1 vs. Araport11
Match: AT2G01580.1 (| transmembrane protein | Chr2:265181-265756 REVERSE LENGTH=191 | 201606) HSP 1 Score: 63.1586 bits (152), Expect = 7.453e-13 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 0 Query: 41 ALDDLVNVNSLFTIAVFVGLSFASRNQRSLEGRPECDPDVSLGKRLILYEVISVACFLLSSLCSKSLK 108 ALD +V+ NSLFT+AVFVG+SF + +L R EC + + L+++EVIS A FL SSL ++ +K Sbjct: 32 ALDGIVSANSLFTVAVFVGISFDQPSDLTLTDRTECSAGRDVERDLVVFEVISFAFFLFSSLVAQGMK 99 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_014460.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_014460.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_014460.1_cmj_v1 ID=CMJ_chr2_014460.1_cmj_v1; Name=CMJ_chr2_014460.1; organism=Citrus maxima; type=mRNA; length=420bpback to top protein sequence of CMJ_chr2_014460.1_cmj_v1 >CMJ_chr2_014460.1_cmj_v1 ID=CMJ_chr2_014460.1_cmj_v1; Name=CMJ_chr2_014460.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=140bpback to top mRNA from alignment at chr2:9947845..9948668- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=824bp; location=Sequence derived from: chr2:9947845..9948668- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:9947845..9948668- >CMJ_chr2_014460.1_cmj_v1 ID=CMJ_chr2_014460.1_cmj_v1; Name=CMJ_chr2_014460.1; organism=Citrus maxima; type=CDS; length=420bp; location=Sequence derived from: chr2:9947845..9948668- (Citrus maximaback to top |