CMJ_chr2_015110.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Match: A0A2H5QJI3|A0A2H5QJI3_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_236210 PE=4 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 1.980e-75 Identity = 120/141 (85.11%), Postives = 130/141 (92.20%), Query Frame = 0 Query: 1 MSSLHQERSYGYGGCEDRMDDVQVEDPIVEVEGELENDGDNAKTADSCDRFKRALENQSDPLAVHSHPGDKINSSREKTPGIGSLVNYTSKERPNEENVCETYELELLEDGEMIPVEDLGHVDDS---GHEKIVENQLQEE 138 +SSLH+ER+YGYGGCEDRMDDVQVED IVEVE ELENDGDNAKTADSCDRFKRALE+QSDPLAVHSHPGDKIN+SR+KTPGIGSLVNYTSKERP+EENVCETYELELLEDGEMIPVEDLGHVDD EK+ E + +EE Sbjct: 138 ISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYELELLEDGEMIPVEDLGHVDDRDIPDTEKLREEKQEEE 278
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Match: A0A067EBC2|A0A067EBC2_CITSI (HTH myb-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042922mg PE=4 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 2.729e-64 Identity = 107/128 (83.59%), Postives = 114/128 (89.06%), Query Frame = 0 Query: 1 MSSLHQERSYGYGGCEDRMDDVQVEDPIVEVEGELENDGDNAKTADSCDRFKRALENQSDPLAVHSHPGDKINSSREKTPGIGSLVNYTSKERPNEENVCETYELELLEDGEMIPVEDLGHVDDSGHE 128 MSSLHQER+Y YGGCEDR DDVQVE+ EVEGELENDGDN KTADSCD+FKRALENQS+PLAVHSH GDKIN SREKTPGI SLVNYTSKERPNEENVCET+ELELLED + IP+EDLG DDSG E Sbjct: 35 MSSLHQERNYSYGGCEDRRDDVQVENLSEEVEGELENDGDNTKTADSCDKFKRALENQSNPLAVHSHTGDKINHSREKTPGIESLVNYTSKERPNEENVCETHELELLEDRKGIPLEDLGCDDDSGRE 162 HSP 2 Score: 130.183 bits (326), Expect = 1.907e-32 Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 0 Query: 95 NEENVCETYELELLEDGEMIPVEDLGHVDDSGHEKIVENQLQEEPYTACCVGEENIVDILLNLWKGDIPDTE 166 +EENVCET+ELELLEDGE IP+EDLG VD SGHEKI E+QLQEEPYTACCVGEE +VDILLNLWKGDIPDTE Sbjct: 193 HEENVCETHELELLEDGEGIPLEDLGCVDGSGHEKIAEDQLQEEPYTACCVGEEFVVDILLNLWKGDIPDTE 264
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Match: A0A1S8ACZ2|A0A1S8ACZ2_CITLI (Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 3.671e-62 Identity = 105/128 (82.03%), Postives = 113/128 (88.28%), Query Frame = 0 Query: 1 MSSLHQERSYGYGGCEDRMDDVQVEDPIVEVEGELENDGDNAKTADSCDRFKRALENQSDPLAVHSHPGDKINSSREKTPGIGSLVNYTSKERPNEENVCETYELELLEDGEMIPVEDLGHVDDSGHE 128 MSSLHQER+Y YGGCEDR DDVQV++ EVEGELENDGDN KTADSCD+FKRALENQS+ LAVHSH GDKIN REKTPGI SLVNYTSKERPNEENVCET+ELELLEDG+ IP+EDLG DDSG E Sbjct: 106 MSSLHQERNYSYGGCEDRRDDVQVKNLSEEVEGELENDGDNTKTADSCDKFKRALENQSNLLAVHSHTGDKINHGREKTPGIESLVNYTSKERPNEENVCETHELELLEDGKGIPLEDLGCDDDSGRE 233 HSP 2 Score: 127.487 bits (319), Expect = 1.766e-31 Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 Query: 95 NEENVCETYELELLEDGEMIPVEDLGHVDDSGHEKIVENQLQEEPYTACCVGEENIVDILLNLWKGDIPDT 165 +EENVCET+ELELLEDGE IP+EDLG VD SGHEKI E+QLQEEPYTACCVGEE +VDILLNLWKGDIPDT Sbjct: 264 HEENVCETHELELLEDGEGIPLEDLGCVDGSGHEKIAEDQLQEEPYTACCVGEEFVVDILLNLWKGDIPDT 334
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Match: A0A067DM41|A0A067DM41_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044718mg PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.884e-61 Identity = 96/105 (91.43%), Postives = 103/105 (98.10%), Query Frame = 0 Query: 1 MSSLHQERSYGYGGCEDRMDDVQVEDPIVEVEGELENDGDNAKTADSCDRFKRALENQSDPLAVHSHPGDKINSSREKTPGIGSLVNYTSKERPNEENVCETYEL 105 +SSLH+ER+YGYGGCEDRMDDVQVED IVEVE ELENDGDNAKTADSCDRFKRALE+QSDPLAVHSHPGDKIN+SR+KTPGIGSLVNYTSKERP+EENVCETYEL Sbjct: 132 ISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYEL 236
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Match: A0A2H5P710|A0A2H5P710_CITUN (HTH myb-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_107720 PE=4 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 3.649e-61 Identity = 105/128 (82.03%), Postives = 113/128 (88.28%), Query Frame = 0 Query: 1 MSSLHQERSYGYGGCEDRMDDVQVEDPIVEVEGELENDGDNAKTADSCDRFKRALENQSDPLAVHSHPGDKINSSREKTPGIGSLVNYTSKERPNEENVCETYELELLEDGEMIPVEDLGHVDDSGHE 128 MSSLHQER+Y YGGCEDR DDVQV++ EVEGELENDGDN KTADSCD+FKRALENQS+ LAVHSH GDKIN REKTPGI SLVNYTSKERPNEENVCET+ELELLEDG+ IP+EDLG DDSG E Sbjct: 138 MSSLHQERNYSYGGCEDRRDDVQVKNLSEEVEGELENDGDNTKTADSCDKFKRALENQSNLLAVHSHTGDKINHGREKTPGIESLVNYTSKERPNEENVCETHELELLEDGKGIPLEDLGCDDDSGRE 265 HSP 2 Score: 127.487 bits (319), Expect = 4.500e-31 Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 Query: 95 NEENVCETYELELLEDGEMIPVEDLGHVDDSGHEKIVENQLQEEPYTACCVGEENIVDILLNLWKGDIPDT 165 +EENVCET+ELELLEDGE IP+EDLG VD SGHEKI E+QLQEEPYTACCVGEE +VDILLNLWKGDIPDT Sbjct: 296 HEENVCETHELELLEDGEGIPLEDLGCVDGSGHEKIAEDQLQEEPYTACCVGEEFVVDILLNLWKGDIPDT 366
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Match: A0A067DN36|A0A067DN36_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038943mg PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.027e-52 Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 0 Query: 19 MDDVQVEDPIVEVEGELENDGDNAKTADSCDRFKRALENQSDPLAVHSHPGDKINSSREKTPGIGSLVNYTSKERPNEENVCETYELELLEDGEMIPVEDLGHV 122 MDDVQVED IVEVE ELENDGDN KT DSCD FKRALE+QSDPL VHSHPGDKIN+SREKTPGI LVNYTSK+R NEENVCETYELELL++GE IPVEDLG+V Sbjct: 1 MDDVQVEDLIVEVEVELENDGDNEKTTDSCDIFKRALESQSDPLPVHSHPGDKINNSREKTPGIVILVNYTSKKRSNEENVCETYELELLKNGETIPVEDLGYV 104
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Match: A0A067EA12|A0A067EA12_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041295mg PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.203e-25 Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0 Query: 2 SSLHQERSYGYGGCEDRMDDVQVEDPIVEVEGELENDGDNAKTADSCDRFKRALENQSD 60 SSLHQER+YGYGGCE +MDDVQVE+ IVEVEG+LEN GDNAKTADSCDRFKRALENQS+ Sbjct: 138 SSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQSE 196 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 7 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_015110.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_015110.1_cmj_v1 ID=CMJ_chr2_015110.1_cmj_v1; Name=CMJ_chr2_015110.1; organism=Citrus maxima; type=mRNA; length=504bpback to top protein sequence of CMJ_chr2_015110.1_cmj_v1 >CMJ_chr2_015110.1_cmj_v1 ID=CMJ_chr2_015110.1_cmj_v1; Name=CMJ_chr2_015110.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=168bpback to top mRNA from alignment at chr2:10446685..10447188+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=504bp; location=Sequence derived from: chr2:10446685..10447188+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:10446685..10447188+ >CMJ_chr2_015110.1_cmj_v1 ID=CMJ_chr2_015110.1_cmj_v1; Name=CMJ_chr2_015110.1; organism=Citrus maxima; type=CDS; length=504bp; location=Sequence derived from: chr2:10446685..10447188+ (Citrus maximaback to top |