CMJ_chr2_015190.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: A0A067DGI5|A0A067DGI5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g048286mg PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.128e-59 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 91 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK Sbjct: 76 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 166
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: V4W4X3|V4W4X3_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017990mg PE=4 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 3.077e-52 Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 91 MLIEIQEK NKFQNL+E MHSLSTTDALKLFHDDILTEKA EQSEHAEAGSNV GL+NQSSDRSCLENHFGELESIILETPAIQVPL VQK Sbjct: 76 MLIEIQEKPNKFQNLYESMHSLSTTDALKLFHDDILTEKAVEQSEHAEAGSNVTGLKNQSSDRSCLENHFGELESIILETPAIQVPLEVQK 166
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: V4TKJ5|V4TKJ5_CITCL (Yae1_N domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10032728mg PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 3.702e-45 Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 91 MLIE QEKRNKFQ+L+E +HSLSTTDALKLFHDDILT+KA EQSE AE GSNV GLQNQSSDRS LENHFGELESIILETPAIQV L VQK Sbjct: 125 MLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 215
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: A0A2H5NAK1|A0A2H5NAK1_CITUN (Yae1_N domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_025020 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 3.702e-45 Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 91 MLIE QEKRNKFQ+L+E +HSLSTTDALKLFHDDILT+KA EQSE AE GSNV GLQNQSSDRS LENHFGELESIILETPAIQV L VQK Sbjct: 125 MLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 215
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: A0A067GU51|A0A067GU51_CITSI (Yae1_N domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027192mg PE=4 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 7.496e-45 Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 91 MLIE QEKRNKFQ+L+E +HSLSTTDALKLFHDDILT+KA EQSE AE GSNV GLQNQSSDRS LENHFGELESIILETPAIQV L VQK Sbjct: 112 MLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 202
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: A0A067H6D2|A0A067H6D2_CITSI (Yae1_N domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027192mg PE=4 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 7.766e-45 Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 91 MLIE QEKRNKFQ+L+E +HSLSTTDALKLFHDDILT+KA EQSE AE GSNV GLQNQSSDRS LENHFGELESIILETPAIQV L VQK Sbjct: 125 MLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 215
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: B9GM36|B9GM36_POPTR (Yae1_N domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G024000 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 7.578e-28 Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 0 Query: 2 LIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQ 90 LIE QEKRNKFQ ++E +HS+STTDALK FHDD+L +K EQSEH++A SNV G+ SS S LEN+ GEL+S++LE+PAI+ L V+ Sbjct: 118 LIEDQEKRNKFQGVYETVHSVSTTDALKFFHDDVLRKKEEEQSEHSKASSNVSGMSKDSSGCSHLENYVGELQSLLLESPAIKSHLSVK 206
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: A0A6M2EYH3|A0A6M2EYH3_9ROSI (Yae1_N domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 9.208e-28 Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 0 Query: 2 LIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQ 90 LIE QEKRNKFQ ++E +HS+STTDALK FHDD+L +K EQSEH++A SNV G+ SS S LEN+ GEL+S++LE+PAI+ L V+ Sbjct: 118 LIEDQEKRNKFQGVYETVHSVSTTDALKFFHDDVLRKKEEEQSEHSKASSNVSGMSKDSSGCSHLENYVGELQSLLLESPAIKSHLSVK 206
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: A0A5C7HHS6|A0A5C7HHS6_9ROSI (Yae1_N domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_017235 PE=4 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.871e-28 Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLG 88 MLI+ QE R KFQ++HE +HSLSTTDAL+LFHDDILT KA E SEHAE S++ GL +D S LEN EL+S++LETPAIQV LG Sbjct: 126 MLIKTQENRAKFQDMHESVHSLSTTDALRLFHDDILTNKAVELSEHAETSSSISGLPEHHADCSRLENLSRELQSLLLETPAIQVHLG 213
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Match: A0A660KRK3|A0A660KRK3_9ROSI (Yae1_N domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_010862 PE=4 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.775e-27 Identity = 53/91 (58.24%), Postives = 74/91 (81.32%), Query Frame = 0 Query: 1 MLIEIQEKRNKFQNLHEYMHSLSTTDALKLFHDDILTEKAAEQSEHAEAGSNVMGLQNQSSDRSCLENHFGELESIILETPAIQVPLGVQK 91 MLIE QEKRN+F+ L+E +HSLST DALKLF+DDI+ +KA E+SE+AE S+V G+Q + SD S LEN+FGEL++++ E+PA++V V+K Sbjct: 168 MLIETQEKRNEFKVLYESVHSLSTADALKLFNDDIMAKKALERSENAEDSSHVAGMQERRSDCSRLENYFGELQALLSESPALEVHFPVEK 258 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_015190.1_cmj_v1 ID=CMJ_chr2_015190.1_cmj_v1; Name=CMJ_chr2_015190.1; organism=Citrus maxima; type=mRNA; length=276bpback to top protein sequence of CMJ_chr2_015190.1_cmj_v1 >CMJ_chr2_015190.1_cmj_v1 ID=CMJ_chr2_015190.1_cmj_v1; Name=CMJ_chr2_015190.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=92bpback to top mRNA from alignment at chr2:10602962..10603237- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=276bp; location=Sequence derived from: chr2:10602962..10603237- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:10602962..10603237- >CMJ_chr2_015190.1_cmj_v1 ID=CMJ_chr2_015190.1_cmj_v1; Name=CMJ_chr2_015190.1; organism=Citrus maxima; type=CDS; length=276bp; location=Sequence derived from: chr2:10602962..10603237- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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