CMJ_chr2_015600.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A2H5PRU8|A0A2H5PRU8_CITUN (AvrRpt-cleavage domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_161820 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.151e-38 Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFY 67 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQS K++ Sbjct: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWF 67
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: V4UFJ1|V4UFJ1_CITCL (AvrRpt-cleavage domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018013mg PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.151e-38 Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFY 67 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQS K++ Sbjct: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWF 67
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A067E6W9|A0A067E6W9_CITSI (AvrRpt-cleavage domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040492mg PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.151e-38 Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFY 67 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQS K++ Sbjct: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWF 67
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A4S4DCG8|A0A4S4DCG8_CAMSI (AvrRpt-cleavage domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_007665 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.043e-37 Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 0 Query: 3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFYEVVEYLKKMFCLYARIAPIKNGFAACKLPVQNHRKL 103 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKP+SP K+++ FKHGA LGKPQS + + P+KNGFAAC LP++ L Sbjct: 82 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPESPTKEETAFKHGATLGKPQSQDTLSITRTTVAL--------PLKNGFAACNLPMRKLEAL 174
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A7J6ENI8|A0A7J6ENI8_CANSA (AvrRpt-cleavage domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_021851 PE=4 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 6.398e-35 Identity = 66/102 (64.71%), Postives = 75/102 (73.53%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFYEVVEYLKKMFCLYARIAPIKNGFAACKLPVQNHRK 102 MA+KG PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKP+SP KDD FKH AVLGKPQS ++ + + C +NGFAAC V+NH + Sbjct: 1 MADKGRPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPESPSKDDPTFKHEAVLGKPQS---VTLLMFETALICR-------RNGFAAC---VRNHEE 89
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A6P4AXN7|A0A6P4AXN7_ZIZJJ (protein NOI4-like OS=Ziziphus jujuba OX=326968 GN=LOC107433895 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 4.660e-33 Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFY 67 MAEKG PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSP K+DS FKH AVLGKP S K++ Sbjct: 1 MAEKGIPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPTKEDSTFKHEAVLGKPASKKWF 67
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A2I4GXY8|A0A2I4GXY8_JUGRE (protein NOI4-like OS=Juglans regia OX=51240 GN=LOC109011859 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.006e-32 Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFY 67 MAEK GPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGK DSP KDDS++KHGAVLGKP S K + Sbjct: 1 MAEKDGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKVDSPPKDDSKYKHGAVLGKPHSQKKW 67
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A2P5B668|A0A2P5B668_PARAD (RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Parasponia andersonii OX=3476 GN=PanWU01x14_268540 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.029e-32 Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFYEVVEYLKKMFCLYAR 82 MA+KG PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKP+SP KDD FKH AVLGKPQS + ++ K + R Sbjct: 1 MADKGRPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPESPTKDDPTFKHEAVLGKPQSARTILILSTSVKNIQVALR 82
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A5E4FGC0|A0A5E4FGC0_PRUDU (AvrRpt-cleavage domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B006152 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.858e-32 Identity = 62/93 (66.67%), Postives = 66/93 (70.97%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSFKFYEVVEYLKKMFCLYARIAPIKNGFAAC 93 M EKG PLPKFGEWDVNDPASAEGFTVIFNKAR EKK GG+PDSP KDD FKHGAVLGKP + + E L F +NGFAAC Sbjct: 1 MGEKGVPLPKFGEWDVNDPASAEGFTVIFNKARTEKKEGGRPDSPSKDDHAFKHGAVLGKPPAPYLVLMAEKLDGWF--------RRNGFAAC 85
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Match: A0A061DL47|A0A061DL47_THECC (RPM1-interacting protein 4 (RIN4) family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_002427 PE=4 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.972e-32 Identity = 70/120 (58.33%), Postives = 77/120 (64.17%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSF-KFYEVVEYLKKMFCLYARIAPIKNGFAACKLPVQNHRKLLSFKSFARKASYIYVQ 119 MA+KG PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGK DSP + D +K GAVLGKPQS K V +KM LY +C+L R LL KSF +K IY Sbjct: 1 MADKGRPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKVDSPGRKDPTYKQGAVLGKPQSICKLILVSSGSEKMVLLYTS--------CSCRL----KRWLLQRKSFQKKGLIIYTM 108
BLAST of CMJ_chr2_015600.1 vs. ExPASy Swiss-Prot
Match: NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.493e-22 Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQF--KHGAVLGKPQSFKFY 67 M++KG PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP SP K G KPQ K+ Sbjct: 1 MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQPKKWL 69
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT2G04410.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr2:1534012-1535040 REVERSE LENGTH=73 | 201606) HSP 1 Score: 93.9745 bits (232), Expect = 4.105e-26 Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQF-KHGAVLGKPQSFKFYEVVEYLKKMFC 78 MA+KG PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GGK DSP KD+ + K+G VL KP KK FC Sbjct: 1 MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEKP-----------AKKWFC 68
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT5G55850.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr5:22603617-22604951 FORWARD LENGTH=114 | 201606) HSP 1 Score: 89.7373 bits (221), Expect = 5.443e-24 Identity = 55/108 (50.93%), Postives = 65/108 (60.19%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVK-DDSQFKHGAVLGKPQSFKFYEVVEYLKKMFCLYARIAPIKNGFAACKLPVQNHRKLLSFK 107 M++KG PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP SP K + K G G P + +KKM L+A ++C L LL+ K Sbjct: 1 MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGG--GDPSK------PQPVKKMALLHAS--------SSCGLLTDTKMDLLAAK 92
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT5G55850.3 (| RPM1-interacting protein 4 (RIN4) family protein | Chr5:22603617-22604850 FORWARD LENGTH=79 | 201606) HSP 1 Score: 86.6557 bits (213), Expect = 3.574e-23 Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 0 Query: 1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQF--KHGAVLGKPQSFKFY 67 M++KG PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP SP K G KPQ K+ Sbjct: 1 MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQPKKWL 69
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT5G55850.2 (| RPM1-interacting protein 4 (RIN4) family protein | Chr5:22603617-22604951 FORWARD LENGTH=130 | 201606) HSP 1 Score: 85.5001 bits (210), Expect = 3.302e-22 Identity = 54/106 (50.94%), Postives = 63/106 (59.43%), Query Frame = 0 Query: 3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVK-DDSQFKHGAVLGKPQSFKFYEVVEYLKKMFCLYARIAPIKNGFAACKLPVQNHRKLLSFK 107 +KG PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP SP K + K G G P + +KKM L+A ++C L LL+ K Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGG--GDPSK------PQPVKKMALLHAS--------SSCGLLTDTKMDLLAAK 108
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT5G63270.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr5:25365498-25365949 REVERSE LENGTH=80 | 201606) HSP 1 Score: 67.781 bits (164), Expect = 8.649e-16 Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0 Query: 1 MAE-KGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKT----GGKPDSPV 46 MAE KG PLPKFGEWDVN+PASAEGFTVIF+KA +EKKT G P+S V Sbjct: 1 MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLV 51
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT5G40645.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr5:16280410-16280883 REVERSE LENGTH=73 | 201606) HSP 1 Score: 65.4698 bits (158), Expect = 4.968e-15 Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0 Query: 7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG--GKPDSPVKDDSQFKHGAVLGKPQSFKFYEVVEYLKKMFCLY 80 PLPKFGEWDVNDPASAEGFTVIF KAR++KKT G+ S +D+++ + E KK FC + Sbjct: 14 PLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQD----------------EPTKKRFCCF 73
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT4G35655.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr4:16910755-16910961 FORWARD LENGTH=68 | 201606) HSP 1 Score: 63.5438 bits (153), Expect = 2.474e-14 Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 Query: 7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG 39 PLPKFGEWDVNDPA+AEGFTVIF+KA +KKTG Sbjct: 9 PLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTG 41
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT2G17660.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr2:7673359-7673568 FORWARD LENGTH=69 | 201606) HSP 1 Score: 62.7734 bits (151), Expect = 5.175e-14 Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0 Query: 3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKH 54 E G LPKFGEWDVNDPA+A+GFTVIF+KA +KKTG S K +SQ K Sbjct: 5 EAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTG---RSSTKTNSQRKQ 53
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT3G48450.2 (| RPM1-interacting protein 4 (RIN4) family protein | Chr3:17944232-17944788 REVERSE LENGTH=89 | 201606) HSP 1 Score: 60.8474 bits (146), Expect = 4.875e-13 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 Query: 7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKT 38 PLPKFGEWD +P SAEGFTVIFNKAR++KKT Sbjct: 9 PLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40
BLAST of CMJ_chr2_015600.1 vs. Araport11
Match: AT3G48450.1 (| RPM1-interacting protein 4 (RIN4) family protein | Chr3:17944232-17944788 REVERSE LENGTH=89 | 201606) HSP 1 Score: 60.8474 bits (146), Expect = 4.875e-13 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 Query: 7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKT 38 PLPKFGEWD +P SAEGFTVIFNKAR++KKT Sbjct: 9 PLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_015600.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_015600.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_015600.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_015600.1_cmj_v1 ID=CMJ_chr2_015600.1_cmj_v1; Name=CMJ_chr2_015600.1; organism=Citrus maxima; type=mRNA; length=402bpback to top protein sequence of CMJ_chr2_015600.1_cmj_v1 >CMJ_chr2_015600.1_cmj_v1 ID=CMJ_chr2_015600.1_cmj_v1; Name=CMJ_chr2_015600.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=134bpback to top mRNA from alignment at chr2:11002133..11004133- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2001bp; location=Sequence derived from: chr2:11002133..11004133- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:11002133..11004133- >CMJ_chr2_015600.1_cmj_v1 ID=CMJ_chr2_015600.1_cmj_v1; Name=CMJ_chr2_015600.1; organism=Citrus maxima; type=CDS; length=402bp; location=Sequence derived from: chr2:11002133..11004133- (Citrus maximaback to top |