CMJ_chr3_008600.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_008600.1
Unique Name	CMJ_chr3_008600.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	243

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
clecmjL633	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL668	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjcmjR090	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjminR0341	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0368	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0391	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0445	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0486	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0531	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0560	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjcsgR148	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cmjcsgR153	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cigcmjL233	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmjcraR249	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR265	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
ciucmjL159	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL531	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgucmjL531	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcstR154	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR240	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR254	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR250	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR278	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
EVM_prediction_HIC_ASM_2.2184	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_008600	CMJ_chr3_008600_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_008600.1.exon1	CMJ_chr3_008600.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_008600.1.cds.1	CMJ_chr3_008600.1.cds.1_cmj_v1	Citrus maxima	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_008600.1.utr3.1	CMJ_chr3_008600.1.utr3.1_cmj_v1	Citrus maxima	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_008600.1_cmj_v1	CMJ_chr3_008600.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_008600.1_cmj_v1	CMJ_chr3_008600.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_008600.1 vs.
BLAST of CMJ_chr3_008600.1 vs.
BLAST of CMJ_chr3_008600.1 vs.

BLAST of CMJ_chr3_008600.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_008600.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_008600.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:24191197..24193186+
coding sequence from alignment at chr3:24191197..24193186+

mRNA sequence

>CMJ_chr3_008600.1_cmj_v1 ID=CMJ_chr3_008600.1_cmj_v1; Name=CMJ_chr3_008600.1; organism=Citrus maxima; type=mRNA; length=243bp
TTTGTCTTGTTTCCCCTTCCATGTTTTTCCTTGCTTCAGAAATATGTTGT
TTGTTTGTTGTTTGATACGTTCAGTTCGGGGAGGCAACATCTCAACTCTG
CCTCAGCTGCTGCACGGGCCGTTAGAATCACGCCCTTTGCTGCTGCACAG
AAGAACGCCACCCTCACCAGTCCACTCATGGATGCCAAAATAAGCCACTC
AACAAGATTCACTCTTGTCTCTCCATGTACTTCGAAATTGTAA

protein sequence of CMJ_chr3_008600.1_cmj_v1

>CMJ_chr3_008600.1_cmj_v1 ID=CMJ_chr3_008600.1_cmj_v1; Name=CMJ_chr3_008600.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=81bp
FVLFPLPCFSLLQKYVVCLLFDTFSSGRQHLNSASAAARAVRITPFAAAQ
KNATLTSPLMDAKISHSTRFTLVSPCTSKL*

mRNA from alignment at chr3:24191197..24193186+

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1990bp; location=Sequence derived from: chr3:24191197..24193186+ (Citrus maxima
ATTTGTCTTGTTTCCCCTTCCATGTTTTTCCTTGCTTCAGAAATATGTTG
TTTGTTTGTTGTTTGATACGTTCAGTTCGGGGAGGCAACATCTCAACTCT
GCCTCAGCTGCTGCACGGGCCGTTAGAATCACGCCCTTTGCTGCTGCACA
GAAGAACGCCACCCTCACCAGTCCACTCATGGATGCCAAAATAAGCCACT
CAACAAGATTCACTCTTGTCTCTCCATGTACTTCGAAATTGTAAGTATCA
TTTATGAACTCAGCCAATTTAATTTTGATTAGTTTAGTTGTGATTGGATT
ATGTGATATATATGGTGAAATTAGGGATTGAAAATCTTGGATCTATTATT
TGAATATTTTTATGCTTATCAAGTGTTTGATAAAATTCCTAAGAGAATGC
AGTAAAAGGATCATTATATCTTAATTTGCAAGTATGAATTCGAAAGAATA
TATATTTACATATTTAAAGAACCGTCAGGATTTGCAAATAAAGAACGGAC
GAAAGAAAAAGGATCATTATATCTCCACGACCATGTTTAACTTCTGTTTA
AGTTAATTGATCTCGTGTTAACTTTTCTCAATTAATTAAAAAAATCAAAT
CTTTAGGCTTATGTAGCCAATAACCATTAGCATGCAGTTGCACACATAAT
TATTATATGGGTGGTACTTAGAATTACTCTTACATTTTGCATGGTATGAC
CTGTGCGAAATATGCATATAAATGAAAGAAATTAGAAGCGAAGTTTTGTA
GGTTTTGAGAAACTTTTGCAAAATTAGGATATTAAGATGAATTTGCTTTT
TAATTTGGGCAGTGGATTTAGGCATTATATGTGATGACATTAGATTCCCC
TTCCCCCACAAAAAAAAAAAAAAATTCCTTCATAAGAACTTTAGAAAATT
GGGATCTTTCTATTATTTTTCACTTTATTTTGGTTTGTAATTAATCATCT
TTCTTTATTTTTTTGAAGAAATTTGTAGATAGTATTAATATAATGATAAG
AGTTAATAAGTTATTCAAGTCCAACCGATAGAATTATAAGTTAGAGTTAT
AGAATATTTAAGCTACAAAATTTTAACTATAAAATATTAGGTAGCTTTGA
TATGTTGGTTCAAAGGATGGTGTTGAAGCCTCGCTTGGTACAATTTGCTT
AGAATGTTGTTGGATTTGCTAGGAAGTGTACATGTAATGATTAAATAAAC
TAATAAAGGTCAACAAGCCTCGGTGCCCCCCCTCCCCCCATGTGTTGTTG
TATGTTTAATCAAAATTATGTATTTATCTTCTTTCGTACTGGGATAATAA
AAAAGCATGGGGTCTCTCCTAGTTAACTTTGTTTCAAAAGATGTATTAGA
GTGGGCGTAAAAGGTTCAAGAGGCTCCATACAAAATCTAAATATGTAAGC
TATGTTATGACTATTATTATTGTTATTATTTTTTATTTTTTACTCAATCT
CTTATTTCTTTCAACTTTATATTTATTGTAAATGTTGATTCATTGACTGC
TTAATTATTTAATCTAGTTCAAGTTTGACATCACCTATTTAATAGATTAA
TCTAAAGCGTTTTGGATGCAAAATTTGTGCAAGTGAATCGAGGTTGATTA
TGTGCTTGTAATCTTTTGATCATATTATTATTTTGAAGTAATATATGATC
AAATTTGTGAAATAGTTTTGGGGAAAAGCTTTAATTTTGTAAAGATTGAA
AATGACAGGTACCTTTGAAGTCATCATCTACTACAACATTGACTCAACAA
AACGAGGATTGAAAATTAAAATCAATGAACAAAATAGCAAATCTGAGGAC
GCTGAAGGATTCATGAAACAACTATGGTTTACATATTTCTCCTTTTGTGT
AATGTTACTTTTATTTTCTTCTACAATGTAATCTTATTTTTAGACTATTG
AATTTTTTTTTTACATTTTAGATTTTAGATTTCCTTGTCATGAATTATAT
TTGTGTTAATAATATTTTTCACTTTAAAGTTTTTTTCTCA

Coding sequence (CDS) from alignment at chr3:24191197..24193186+

>CMJ_chr3_008600.1_cmj_v1 ID=CMJ_chr3_008600.1_cmj_v1; Name=CMJ_chr3_008600.1; organism=Citrus maxima; type=CDS; length=243bp; location=Sequence derived from: chr3:24191197..24193186+ (Citrus maxima
TTTGTCTTGTTTCCCCTTCCATGTTTTTCCTTGCTTCAGAAATATGTTGT
TTGTTTGTTGTTTGATACGTTCAGTTCGGGGAGGCAACATCTCAACTCTG
CCTCAGCTGCTGCACGGGCCGTTAGAATCACGCCCTTTGCTGCTGCACAG
AAGAACGCCACCCTCACCAGTCCACTCATGGATGCCAAAATAAGCCACTC
AACAAGATTCACTCTTGTCTCTCCATGTACTTCGAAATTGTAA