CMJ_chr3_009140.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A067EUP9|A0A067EUP9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0479051mg PE=4 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 1.038e-79 Identity = 122/137 (89.05%), Postives = 124/137 (90.51%), Query Frame = 0 Query: 44 GILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHLHEASEKGSPVPGLDTSIIIKEHAHEEIA 180 G + KNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCT HGKEG FSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAA GILILIFG+ISDV G M AGHLHE SEKGSPVPGLDTSIIIKEHAHEE A Sbjct: 51 GFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGVFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAAVSGILILIFGNISDVSGAMAAGHLHEDSEKGSPVPGLDTSIIIKEHAHEETA 187
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A067EUI0|A0A067EUI0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043472mg PE=4 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 2.996e-78 Identity = 120/137 (87.59%), Postives = 125/137 (91.24%), Query Frame = 0 Query: 44 GILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHLHEASEKGSPVPGLDTSIIIKEHAHEEIA 180 G + KNWQRHHVLLFAAIQSTSAGLLH FGRVLL+DCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNV TAFGVSFLAAT GIL+LIFG+I DVGG M AG+LHE SEKGSPVPGLDTSIIIKEHAHEE A Sbjct: 85 GFYYKEKNWQRHHVLLFAAIQSTSAGLLHTFGRVLLIDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVGTAFGVSFLAATSGILVLIFGNIGDVGGAMAAGNLHEDSEKGSPVPGLDTSIIIKEHAHEETA 221
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A2H5QFQ2|A0A2H5QFQ2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_225810 PE=4 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 2.887e-76 Identity = 122/137 (89.05%), Postives = 124/137 (90.51%), Query Frame = 0 Query: 44 GILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHLHEASEKGSPVPGLDTSIIIKEHAHEEIA 180 G + KNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCT HGKEG FSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAA GILILIFG+ISDV G M AGHLHE SEKGSPVPGLDTSIIIKEHAHEE A Sbjct: 412 GFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGVFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAAVSGILILIFGNISDVSGAMAAGHLHEDSEKGSPVPGLDTSIIIKEHAHEETA 548
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: V4V244|V4V244_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003885mg PE=4 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 5.894e-76 Identity = 121/137 (88.32%), Postives = 126/137 (91.97%), Query Frame = 0 Query: 44 GILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHLHEASEKGSPVPGLDTSIIIKEHAHEEIA 180 G + KNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCT HGKEGAFSVWHSWVKALGTCTGFAVASAI G+VSTAFGVSFLAATIGILILIFG+ISDVGG M AGHL+E SEKGSPVPGLDTSIIIKEH +EE A Sbjct: 440 GFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGHVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA 576
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A6J5X9G3|A0A6J5X9G3_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30706 PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 7.538e-54 Identity = 92/152 (60.53%), Postives = 112/152 (73.68%), Query Frame = 0 Query: 23 QSRCCENAISGFPLSSVDFRYGILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHL-HEASEKGSPVPGLDTSIIIKE 173 ++ + + GF LS + YG G W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+ GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFG+ISD GG AGH+ H++ E GSPV GLD + E Sbjct: 163 KANAVKMQLMGFFLSLITSGYGFFFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPAGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAAATAYE 314
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A6J5USE2|A0A6J5USE2_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31069 PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 8.044e-54 Identity = 92/152 (60.53%), Postives = 112/152 (73.68%), Query Frame = 0 Query: 23 QSRCCENAISGFPLSSVDFRYGILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHL-HEASEKGSPVPGLDTSIIIKE 173 ++ + + GF LS + YG G W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+ GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFG+ISD GG AGH+ H++ E GSPV GLD + E Sbjct: 163 KANAVKMQLMGFFLSLITSGYGFFFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAAATAYE 314
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A5C7HCL2|A0A5C7HCL2_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019498 PE=4 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.047e-52 Identity = 94/148 (63.51%), Postives = 114/148 (77.03%), Query Frame = 0 Query: 33 GFPLSSVDFRYGILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHLHE-ASEKGSPVPGLDT-SIIIKEHAHEE 178 GF L+ + G +GK W++ H+L+FA IQSTS GLLHA+GRVLLLDCT HGKEGAFS+W SWVKALGTC GFAVASA+ GN+ +F ++F A IGI+ LIFG+ISDVGG AG + E SEKGSPVPGLDT SIIIK+ H++ Sbjct: 395 GFFLALLTSSVGYHFRGKIWEKQHILVFAGIQSTSTGLLHAYGRVLLLDCTPHGKEGAFSMWFSWVKALGTCAGFAVASALPGNIYASFRIAFCTAMIGIITLIFGNISDVGGAKAAGVVQEDYSEKGSPVPGLDTSSIIIKQPLHDQ 542
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A251P603|A0A251P603_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G024200 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.480e-51 Identity = 94/158 (59.49%), Postives = 116/158 (73.42%), Query Frame = 0 Query: 23 QSRCCENAISGFPLSSVDFRYGILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHL-HEASEKGSPVPGLD---TSIIIKEHAH 176 ++ + + GF LS YG G W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+ GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFG+ISD GG AG++ H++ E GSPV GLD T+ I+E A+ Sbjct: 388 KANAVKMQLMGFFLSLTTSGYGFYFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGYVRHDSEEGGSPVQGLDAAATAYEIQESAY 545
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A5E4FR82|A0A5E4FR82_PRUDU (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B022614 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.557e-51 Identity = 94/157 (59.87%), Postives = 115/157 (73.25%), Query Frame = 0 Query: 23 QSRCCENAISGFPLSSVDFRYGILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHL-HEASEKGSPVPGLD---TSIIIKEHA 175 ++ + + GF LS YG G W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+ GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFG+ISD GG AG++ H++ E GSPV GLD T+ I+E A Sbjct: 388 KANAVKMQLMGFFLSLTTSGYGFYFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGYVRHDSEEGGSPVQGLDAAATAYEIQESA 544
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Match: A0A314XLF1|A0A314XLF1_PRUYE (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23388 PE=4 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 6.385e-50 Identity = 89/147 (60.54%), Postives = 108/147 (73.47%), Query Frame = 0 Query: 23 QSRCCENAISGFPLSSVDFRYGILLQGKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAATIGILILIFGDISDVGGDMVAGHL-HEASEKGSPVPGLDTS 168 ++ + + GF LS YG W++ HVLLFAA+QSTSAGLLHAFGRVLL+DC+ GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFG+ISD GG AGH+ H++ E GSPV GLD + Sbjct: 360 KANAVKMQLMGFFLSLTTSGYGFYFGSSVWEQRHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAA 506 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009140.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_009140.1_cmj_v1 ID=CMJ_chr3_009140.1_cmj_v1; Name=CMJ_chr3_009140.1; organism=Citrus maxima; type=mRNA; length=543bpback to top protein sequence of CMJ_chr3_009140.1_cmj_v1 >CMJ_chr3_009140.1_cmj_v1 ID=CMJ_chr3_009140.1_cmj_v1; Name=CMJ_chr3_009140.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=181bpback to top mRNA from alignment at chr3:25139209..25139751- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=543bp; location=Sequence derived from: chr3:25139209..25139751- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:25139209..25139751- >CMJ_chr3_009140.1_cmj_v1 ID=CMJ_chr3_009140.1_cmj_v1; Name=CMJ_chr3_009140.1; organism=Citrus maxima; type=CDS; length=543bp; location=Sequence derived from: chr3:25139209..25139751- (Citrus maximaback to top |