CMJ_chr3_009180.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A067EUP9|A0A067EUP9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0479051mg PE=4 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 9.899e-102 Identity = 158/169 (93.49%), Postives = 159/169 (94.08%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEKGSPVPGLDASIIIKEHAHEETA 169
M LLQPLQH+IKADAVRMQLLGFLLALLTSG GFYYK KNWQRHHVLLFAAIQSTS GLLHAFGRVLLLDCTPH KEG FSVWHSWVKALGTC GFAVASAISGNVSTAFGVSFLAA SGILILIFGNISDV GAMAAGHLHEDSEKGSPVPGLD SIIIKEHAHEETA
Sbjct: 19 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGTGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGVFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAAVSGILILIFGNISDVSGAMAAGHLHEDSEKGSPVPGLDTSIIIKEHAHEETA 187
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A067EUI0|A0A067EUI0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043472mg PE=4 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 1.310e-98 Identity = 154/169 (91.12%), Postives = 158/169 (93.49%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEKGSPVPGLDASIIIKEHAHEETA 169
M LLQPLQH+IKADAVRMQLLGFLLALLTSGMGFYYK KNWQRHHVLLFAAIQSTS GLLH FGRVLL+DCT H KEGAFSVWHSWVKALGTC GFAVASAISGNV TAFGVSFLAA SGIL+LIFGNI DVGGAMAAG+LHEDSEKGSPVPGLD SIIIKEHAHEETA
Sbjct: 53 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHTFGRVLLIDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVGTAFGVSFLAATSGILVLIFGNIGDVGGAMAAGNLHEDSEKGSPVPGLDTSIIIKEHAHEETA 221
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A2H5QFQ2|A0A2H5QFQ2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_225810 PE=4 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 4.550e-98 Identity = 158/169 (93.49%), Postives = 159/169 (94.08%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEKGSPVPGLDASIIIKEHAHEETA 169
M LLQPLQH+IKADAVRMQLLGFLLALLTSG GFYYK KNWQRHHVLLFAAIQSTS GLLHAFGRVLLLDCTPH KEG FSVWHSWVKALGTC GFAVASAISGNVSTAFGVSFLAA SGILILIFGNISDV GAMAAGHLHEDSEKGSPVPGLD SIIIKEHAHEETA
Sbjct: 380 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGTGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGVFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAAVSGILILIFGNISDVSGAMAAGHLHEDSEKGSPVPGLDTSIIIKEHAHEETA 548
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: V4V244|V4V244_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003885mg PE=4 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 1.325e-95 Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEKGSPVPGLDASIIIKEHAHEETA 169
M LLQPLQH+IKADAVRMQLLGFLLALLTSGMGFYYK KNWQRHHVLLFAAIQSTS GLLHAFGRVLLLDCTPH KEGAFSVWHSWVKALGTC GFAVASAI G+VSTAFGVSFLAA GILILIFGNISDVGGAMAAGHL+EDSEKGSPVPGLD SIIIKEH +EETA
Sbjct: 408 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGHVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA 576
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A6J5USE2|A0A6J5USE2_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31069 PE=4 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.215e-74 Identity = 115/163 (70.55%), Postives = 136/163 (83.44%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEK-GSPVPGLDASIIIKE 162
+ LLQPLQH IKA+AV+MQL+GF L+L+TSG GF++ G W++HHVLLFAA+QSTS GLLHAFGRVLL+DC+P KEGAFS W SW KALGTCAGFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAGH+ DSE+ GSPV GLDA+ E
Sbjct: 152 LPLLQPLQHFIKANAVKMQLMGFFLSLITSGYGFFFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAAATAYE 314
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A6J5X9G3|A0A6J5X9G3_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30706 PE=4 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.494e-74 Identity = 115/163 (70.55%), Postives = 136/163 (83.44%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEK-GSPVPGLDASIIIKE 162
+ LLQPLQH IKA+AV+MQL+GF L+L+TSG GF++ G W++HHVLLFAA+QSTS GLLHAFGRVLL+DC+P KEGAFS W SW KALGTCAGFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAGH+ DSE+ GSPV GLDA+ E
Sbjct: 152 LPLLQPLQHFIKANAVKMQLMGFFLSLITSGYGFFFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPAGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAAATAYE 314
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A5C7HCL2|A0A5C7HCL2_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019498 PE=4 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 3.172e-73 Identity = 115/171 (67.25%), Postives = 143/171 (83.63%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHED-SEKGSPVPGLD-ASIIIKEHAHEETA 169
+ LLQPLQ +IKAD+++MQ +GF LALLTS +G++++GK W++ H+L+FA IQSTS GLLHA+GRVLLLDCTPH KEGAFS+W SWVKALGTCAGFAVASA+ GN+ +F ++F A GI+ LIFGNISDVGGA AAG + ED SEKGSPVPGLD +SIIIK+ H++T
Sbjct: 374 LPLLQPLQQVIKADSIKMQHVGFFLALLTSSVGYHFRGKIWEKQHILVFAGIQSTSTGLLHAYGRVLLLDCTPHGKEGAFSMWFSWVKALGTCAGFAVASALPGNIYASFRIAFCTAMIGIITLIFGNISDVGGAKAAGVVQEDYSEKGSPVPGLDTSSIIIKQPLHDQTT 544
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A251P603|A0A251P603_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G024200 PE=4 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 4.986e-72 Identity = 116/169 (68.64%), Postives = 139/169 (82.25%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEK-GSPVPGLDASII---IKEHAH 165
+ +LQPLQH IKA+AV+MQL+GF L+L TSG GFY+ G W++HHVLLFAA+QSTS GLLHAFGRVLL+DC+P KEGAFS W SW KALGTCAGFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAG++ DSE+ GSPV GLDA+ I+E A+
Sbjct: 377 LPMLQPLQHFIKANAVKMQLMGFFLSLTTSGYGFYFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGYVRHDSEEGGSPVQGLDAAATAYEIQESAY 545
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A5E4FR82|A0A5E4FR82_PRUDU (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B022614 PE=4 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 6.719e-72 Identity = 114/163 (69.94%), Postives = 135/163 (82.82%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEK-GSPVPGLDASIIIKE 162
+ +LQPLQH IKA+AV+MQL+GF L+L TSG GFY+ G W++HHVLLFAA+QSTS GLLHAFGRVLL+DC+P KEGAFS W SW KALGTCAGFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAG++ DSE+ GSPV GLDA+ E
Sbjct: 377 LPMLQPLQHFIKANAVKMQLMGFFLSLTTSGYGFYFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGYVRHDSEEGGSPVQGLDAAATAYE 539
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Match: A0A314XLF1|A0A314XLF1_PRUYE (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23388 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 7.074e-71 Identity = 112/158 (70.89%), Postives = 132/158 (83.54%), Query Frame = 0 Query: 1 MTLLQPLQHIIKADAVRMQLLGFLLALLTSGMGFYYKGKNWQRHHVLLFAAIQSTSVGLLHAFGRVLLLDCTPHVKEGAFSVWHSWVKALGTCAGFAVASAISGNVSTAFGVSFLAAASGILILIFGNISDVGGAMAAGHLHEDSEK-GSPVPGLDAS 157
+ +LQPLQH IKA+AV+MQL+GF L+L TSG GFY+ W++ HVLLFAA+QSTS GLLHAFGRVLL+DC+P KEGAFS W SW KALGTCAGFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAGH+ DSE+ GSPV GLDA+
Sbjct: 349 LPMLQPLQHFIKANAVKMQLMGFFLSLTTSGYGFYFGSSVWEQRHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAA 506 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009180.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_009180.1_cmj_v1 ID=CMJ_chr3_009180.1_cmj_v1; Name=CMJ_chr3_009180.1; organism=Citrus maxima; type=mRNA; length=510bpback to top protein sequence of CMJ_chr3_009180.1_cmj_v1 >CMJ_chr3_009180.1_cmj_v1 ID=CMJ_chr3_009180.1_cmj_v1; Name=CMJ_chr3_009180.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=170bpback to top mRNA from alignment at chr3:25152534..25153479- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=946bp; location=Sequence derived from: chr3:25152534..25153479- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:25152534..25153479- >CMJ_chr3_009180.1_cmj_v1 ID=CMJ_chr3_009180.1_cmj_v1; Name=CMJ_chr3_009180.1; organism=Citrus maxima; type=CDS; length=510bp; location=Sequence derived from: chr3:25152534..25153479- (Citrus maximaback to top |