CMJ_chr3_009350.1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: V4V244|V4V244_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003885mg PE=4 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 1.516e-113 Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA 169
MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRG+VSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA
Sbjct: 408 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGHVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA 576
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A067EUP9|A0A067EUP9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0479051mg PE=4 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 4.642e-104 Identity = 160/169 (94.67%), Postives = 162/169 (95.86%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA 169
MPLLQPLQHVIKADAVRMQLLGFLLALLTSG GFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEG FSVWHSWVKALGTCTGFAVASAI GNVSTAFGVSFLAA GILILIFGNISDV GAMAAGHL+EDSEKGSPVPGLDTSIIIKEH +EETA
Sbjct: 19 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGTGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGVFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAAVSGILILIFGNISDVSGAMAAGHLHEDSEKGSPVPGLDTSIIIKEHAHEETA 187
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A067EUI0|A0A067EUI0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043472mg PE=4 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 8.307e-102 Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA 169
MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLH FGRVLL+DCT HGKEGAFSVWHSWVKALGTCTGFAVASAI GNV TAFGVSFLAAT GIL+LIFGNI DVGGAMAAG+L+EDSEKGSPVPGLDTSIIIKEH +EETA
Sbjct: 53 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHTFGRVLLIDCTSHGKEGAFSVWHSWVKALGTCTGFAVASAISGNVGTAFGVSFLAATSGILVLIFGNIGDVGGAMAAGNLHEDSEKGSPVPGLDTSIIIKEHAHEETA 221
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A2H5QFQ2|A0A2H5QFQ2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_225810 PE=4 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 5.443e-100 Identity = 160/169 (94.67%), Postives = 162/169 (95.86%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEKGSPVPGLDTSIIIKEHVYEETA 169
MPLLQPLQHVIKADAVRMQLLGFLLALLTSG GFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEG FSVWHSWVKALGTCTGFAVASAI GNVSTAFGVSFLAA GILILIFGNISDV GAMAAGHL+EDSEKGSPVPGLDTSIIIKEH +EETA
Sbjct: 380 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGTGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGVFSVWHSWVKALGTCTGFAVASAISGNVSTAFGVSFLAAVSGILILIFGNISDVSGAMAAGHLHEDSEKGSPVPGLDTSIIIKEHAHEETA 548
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A6J5X9G3|A0A6J5X9G3_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30706 PE=4 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 4.511e-75 Identity = 115/163 (70.55%), Postives = 136/163 (83.44%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEK-GSPVPGLDTSIIIKE 162
+PLLQPLQH IKA+AV+MQL+GF L+L+TSG GF++ W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+P GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAGH+ DSE+ GSPV GLD + E
Sbjct: 152 LPLLQPLQHFIKANAVKMQLMGFFLSLITSGYGFFFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPAGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAAATAYE 314
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A6J5USE2|A0A6J5USE2_PRUAR (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31069 PE=4 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 4.560e-75 Identity = 115/163 (70.55%), Postives = 136/163 (83.44%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEK-GSPVPGLDTSIIIKE 162
+PLLQPLQH IKA+AV+MQL+GF L+L+TSG GF++ W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+P GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAGH+ DSE+ GSPV GLD + E
Sbjct: 152 LPLLQPLQHFIKANAVKMQLMGFFLSLITSGYGFFFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAAATAYE 314
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A5C7HCL2|A0A5C7HCL2_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019498 PE=4 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.463e-74 Identity = 117/171 (68.42%), Postives = 145/171 (84.80%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYED-SEKGSPVPGLDT-SIIIKEHVYEETA 169
+PLLQPLQ VIKAD+++MQ +GF LALLTS +G++++ K W++ H+L+FA IQSTS GLLHA+GRVLLLDCTPHGKEGAFS+W SWVKALGTC GFAVASA+ GN+ +F ++F A IGI+ LIFGNISDVGGA AAG + ED SEKGSPVPGLDT SIIIK+ ++++T
Sbjct: 374 LPLLQPLQQVIKADSIKMQHVGFFLALLTSSVGYHFRGKIWEKQHILVFAGIQSTSTGLLHAYGRVLLLDCTPHGKEGAFSMWFSWVKALGTCAGFAVASALPGNIYASFRIAFCTAMIGIITLIFGNISDVGGAKAAGVVQEDYSEKGSPVPGLDTSSIIIKQPLHDQTT 544
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A251P603|A0A251P603_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G024200 PE=4 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 9.788e-73 Identity = 117/169 (69.23%), Postives = 139/169 (82.25%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEK-GSPVPGLD---TSIIIKEHVY 165
+P+LQPLQH IKA+AV+MQL+GF L+L TSG GFY+ W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+P GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAG++ DSE+ GSPV GLD T+ I+E Y
Sbjct: 377 LPMLQPLQHFIKANAVKMQLMGFFLSLTTSGYGFYFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGYVRHDSEEGGSPVQGLDAAATAYEIQESAY 545
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A314XLF1|A0A314XLF1_PRUYE (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23388 PE=4 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 2.257e-72 Identity = 113/158 (71.52%), Postives = 133/158 (84.18%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEK-GSPVPGLDTS 157
+P+LQPLQH IKA+AV+MQL+GF L+L TSG GFY+ W++ HVLLFAA+QSTSAGLLHAFGRVLL+DC+P GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAGH+ DSE+ GSPV GLD +
Sbjct: 349 LPMLQPLQHFIKANAVKMQLMGFFLSLTTSGYGFYFGSSVWEQRHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGHVRHDSEEGGSPVQGLDAA 506
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Match: A0A5E4FR82|A0A5E4FR82_PRUDU (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B022614 PE=4 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 4.619e-72 Identity = 114/163 (69.94%), Postives = 135/163 (82.82%), Query Frame = 0 Query: 1 MPLLQPLQHVIKADAVRMQLLGFLLALLTSGMGFYYKEKNWQRHHVLLFAAIQSTSAGLLHAFGRVLLLDCTPHGKEGAFSVWHSWVKALGTCTGFAVASAIRGNVSTAFGVSFLAATIGILILIFGNISDVGGAMAAGHLYEDSEK-GSPVPGLDTSIIIKE 162
+P+LQPLQH IKA+AV+MQL+GF L+L TSG GFY+ W++HHVLLFAA+QSTSAGLLHAFGRVLL+DC+P GKEGAFS W SW KALGTC GFAVASAI GNVST+FG+SF+ A G+L+LIFGNISD GGA AAG++ DSE+ GSPV GLD + E
Sbjct: 377 LPMLQPLQHFIKANAVKMQLMGFFLSLTTSGYGFYFGGSVWKQHHVLLFAAVQSTSAGLLHAFGRVLLMDCSPPGKEGAFSAWFSWTKALGTCAGFAVASAIPGNVSTSFGLSFITAVCGVLVLIFGNISDSGGAKAAGYVRHDSEEGGSPVQGLDAAATAYE 539 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009350.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_009350.1_cmj_v1 ID=CMJ_chr3_009350.1_cmj_v1; Name=CMJ_chr3_009350.1; organism=Citrus maxima; type=mRNA; length=510bpback to top protein sequence of CMJ_chr3_009350.1_cmj_v1 >CMJ_chr3_009350.1_cmj_v1 ID=CMJ_chr3_009350.1_cmj_v1; Name=CMJ_chr3_009350.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=170bpback to top mRNA from alignment at chr3:25226212..25226721- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=510bp; location=Sequence derived from: chr3:25226212..25226721- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:25226212..25226721- >CMJ_chr3_009350.1_cmj_v1 ID=CMJ_chr3_009350.1_cmj_v1; Name=CMJ_chr3_009350.1; organism=Citrus maxima; type=CDS; length=510bp; location=Sequence derived from: chr3:25226212..25226721- (Citrus maximaback to top |