CMJ_chr3_009360.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_009360.1
Unique Name	CMJ_chr3_009360.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	210

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
cmjcsR252	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
clecmjL627	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL663	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR214	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL217	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjminR0310	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0369	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0436	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0520	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL223	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL565	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR153	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL284	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL062	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR204	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR239	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR170	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL518	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cmjmpkR152	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
cmjmpjR164	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeacmjL359	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
aeacmjL363	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cmhcmjL146	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjlssR177	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL552	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcumR244	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_009360	CMJ_chr3_009360_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009360.1.exon2	CMJ_chr3_009360.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_009360.1.exon1	CMJ_chr3_009360.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009360.1.cds.2	CMJ_chr3_009360.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_009360.1.cds.1	CMJ_chr3_009360.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009360.1_cmj_v1	CMJ_chr3_009360.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_009360.1_cmj_v1	CMJ_chr3_009360.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Match: V4V244|V4V244_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003885mg PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.190e-41
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0

Query:    1 MAAAAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMWF 69
            MAAAAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMW+
Sbjct:   29 MAAAAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMWY 97

[Close]

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Match: A0A2H5QFQ2|A0A2H5QFQ2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_225810 PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.186e-40
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0

Query:    1 MAAAAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMWF 69
            MA AAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMW+
Sbjct:    1 MAGAAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMWY 69

[Close]

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Match: V4V239|V4V239_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003404mg PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.082e-30
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 0

Query:    1 MAAAAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIW 66
            MAAA AAERKHE L DD+G+SVS EDQ+ NEDMP+ HDAA+KIER++GAYMAYSGL+EKPSKLEIW
Sbjct:    1 MAAAVAAERKHEVLSDDEGISVSVEDQKVNEDMPEAHDAAMKIERSEGAYMAYSGLREKPSKLEIW 66

[Close]

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Match: A0A067F5Q4|A0A067F5Q4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0479052mg PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.667e-28
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query:   20 MSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMWF 69
            MSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMW+
Sbjct:    1 MSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIWMWY 50

[Close]

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Match: A0A067EUQ3|A0A067EUQ3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035250mg PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.732e-23
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 0

Query:    5 AAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAYMAYSGLQEKPSKLEIW 66
            AAAERKHE L  D+G+SVS EDQE +E+MP+ HDAA+KIERAKGAY AYS LQEKPS+LEIW
Sbjct:    2 AAAERKHEVL-SDEGISVSVEDQEVSEEMPEAHDAAMKIERAKGAYTAYSELQEKPSQLEIW 62

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
V4V244\|V4V244_CITCL	4.190e-41	98.55	Uncharacterized protein (Fragment) OS=Citrus cleme...	[more]
A0A2H5QFQ2\|A0A2H5QFQ2_CITUN	1.186e-40	97.10	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
V4V239\|V4V239_CITCL	7.082e-30	78.79	Uncharacterized protein (Fragment) OS=Citrus cleme...	[more]
A0A067F5Q4\|A0A067F5Q4_CITSI	6.667e-28	98.00	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
A0A067EUQ3\|A0A067EUQ3_CITSI	1.732e-23	75.81	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_009360.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:25228634..25229738-
coding sequence from alignment at chr3:25228634..25229738-

mRNA sequence

>CMJ_chr3_009360.1_cmj_v1 ID=CMJ_chr3_009360.1_cmj_v1; Name=CMJ_chr3_009360.1; organism=Citrus maxima; type=mRNA; length=210bp
ATGGCAGCGGCGGCAGCAGCCGAAAGAAAACATGAGGCTCTAAGAGATGA
TCAAGGAATGTCGGTATCAGAAGAAGATCAGGAAGCGAATGAAGACATGC
CTGACGTACACGATGCTGCAGTGAAAATTGAGAGGGCCAAGGGGGCTTAT
ATGGCCTACTCAGGGCTACAAGAAAAGCCATCGAAGCTTGAAATTTGGAT
GTGGTTCTAA

protein sequence of CMJ_chr3_009360.1_cmj_v1

>CMJ_chr3_009360.1_cmj_v1 ID=CMJ_chr3_009360.1_cmj_v1; Name=CMJ_chr3_009360.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=70bp
MAAAAAAERKHEALRDDQGMSVSEEDQEANEDMPDVHDAAVKIERAKGAY
MAYSGLQEKPSKLEIWMWF*

mRNA from alignment at chr3:25228634..25229738-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1105bp; location=Sequence derived from: chr3:25228634..25229738- (Citrus maxima
ATGGCAGCGGCGGCAGCAGCCGAAAGAAAACATGAGGCTCTAAGAGATGA
TCAAGGAATGTCGGTATCAGAAGAAGATCAGGAAGCGAATGAAGACATGC
CTGACGTACACGATGCTGCAGTGAAAATTGAGAGGGCCAAGGGGGCTTAT
ATGGCCTACTCAGGGCTACAAGAAAAGCCATCGAAGCTTGAAATTTGGAT
GTGGTATTTGTACGAAATGTGCTCTCACTTCATTGTTACAACGGTTGTGC
CAGTTGTTTTTCCCCTCATCATCAGTGAAATTGTGTCTAAAACTGATGAT
CATGATGATGATCAAGGTTGGGGACAAACCCCTAGAGGCATTGCTTGTAT
GCTCAGAGAGATCAAACTGTAAGTCCTTTTTTCTAGCTACATCCATTATT
GTAGATAAAAGTATATTGCTTTGTAGAACATTCAATCAAAATTGTATATA
TACAAAGTACATCAGTATAATTTGATCTAAGAGTTGGTTTAAAGAACAAA
TTGATTGCATCATTCTTTCGAAGAATGGCAACCTTCCCTGCTTTGGGGTT
TGGGTTCGAGGATTTTGGGTGCGTTTGGGATTGAAGTGCTGTAAGATACA
ACTGCTGTAGAAAAAAAATTGTAATTATGAAATAAAATTAATAATATATA
GTAAATTTAAATTTTAAATAATAATTTTGATAAAATTATTAAAAATATAA
TAAATTTTCTATTATACAATTGAAAAATCATATTAACATAGTTTCCAAAC
TACAACAACTAATGTTTAACAGACACTTTAGTGCTGTAACTTAAAACATA
TAACTGTTTAACCTCAATCTTAAACACACCATTTTTTGATCTCAAACCCG
AACTCAAACTTGAAATATATTTTTTAAAATTCTAAAATTAAAATATATTT
TAAATTCACCCAATTAAAAAAATATTTAATTTAATCAAATAATAAAAAAA
TGAAAATGGTAATGTTCATTTCTGCAGCATTTTAACATATAATATCACTG
TAAATAAAAAAAATTAAAACAAATTTAGCTATCGCTTTCAGTTTTCTTAA
ATGGTTCAAAAGCTGACAATATAATTGATGCTTTTTGTAATTTTCCAGGT
TCTAA

Coding sequence (CDS) from alignment at chr3:25228634..25229738-

>CMJ_chr3_009360.1_cmj_v1 ID=CMJ_chr3_009360.1_cmj_v1; Name=CMJ_chr3_009360.1; organism=Citrus maxima; type=CDS; length=210bp; location=Sequence derived from: chr3:25228634..25229738- (Citrus maxima
ATGGCAGCGGCGGCAGCAGCCGAAAGAAAACATGAGGCTCTAAGAGATGA
TCAAGGAATGTCGGTATCAGAAGAAGATCAGGAAGCGAATGAAGACATGC
CTGACGTACACGATGCTGCAGTGAAAATTGAGAGGGCCAAGGGGGCTTAT
ATGGCCTACTCAGGGCTACAAGAAAAGCCATCGAAGCTTGAAATTTGGAT
GTGGTTCTAA