CMJ_chr3_009550.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_009550.1
Unique Name	CMJ_chr3_009550.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	240

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmcmjL217	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL223	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL238	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcmjL284	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL062	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cllcmjL156	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR204	Citrus maxima cv. XGF genome v1.0	Citrus maxima
caacmjL350	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcmjL616	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
cmjmpjR164	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cigcmjL453	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR276	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjneiR168	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Cic117190.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
Abu3g_008370.1	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
drCitSine.Jinhong.1.0.HB3g24630.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
LW067230.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
JLX083590.1	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
Citropsis022940.1	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
Chh186700.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
g9213.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
g5195.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
hap2-g8863.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
drCitSine.Jinhong.1.0.HA3g24810.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
Cic270190.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
Csi03G023370.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
huyou00009982-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cg3g008460.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_009550	CMJ_chr3_009550_cmj_v1	Citrus maxima	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009550.1_cmj_v1	CMJ_chr3_009550.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_009550.1_cmj_v1	CMJ_chr3_009550.1_cmj_v1-protein	Citrus maxima	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009550.1.exon3	CMJ_chr3_009550.1.exon3_cmj_v1	Citrus maxima	exon
CMJ_chr3_009550.1.exon2	CMJ_chr3_009550.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr3_009550.1.exon1	CMJ_chr3_009550.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009550.1.cds.3	CMJ_chr3_009550.1.cds.3_cmj_v1	Citrus maxima	CDS
CMJ_chr3_009550.1.cds.2	CMJ_chr3_009550.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr3_009550.1.cds.1	CMJ_chr3_009550.1.cds.1_cmj_v1	Citrus maxima	CDS

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_009550.1 vs.
BLAST of CMJ_chr3_009550.1 vs.
BLAST of CMJ_chr3_009550.1 vs.

BLAST of CMJ_chr3_009550.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_009550.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_009550.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..44

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:25580802..25582390-
coding sequence from alignment at chr3:25580802..25582390-

mRNA sequence

>CMJ_chr3_009550.1_cmj_v1 ID=CMJ_chr3_009550.1_cmj_v1; Name=CMJ_chr3_009550.1; organism=Citrus maxima; type=mRNA; length=240bp
ATGGGAAATCGAATCTGTTGTCTTGGAGGCAATCCACCACAAGCTGCGGC
GTCCAGCGACGCCGGCGAATCATCACCGGAAGGTGGCAATCAAAAATTAA
GAAATAATTCTTCGGGGGCTACTCCAGTTGCTCCCAAACCTCCTCAAGGG
TCACTTGATGATCGTTTCGTTTTGCTCGAGTCTCCACAAAAGACAAGACT
TTACTCTGAAATCGAAGTGCTCTTCCAAGTTACGTGCTGA

protein sequence of CMJ_chr3_009550.1_cmj_v1

>CMJ_chr3_009550.1_cmj_v1 ID=CMJ_chr3_009550.1_cmj_v1; Name=CMJ_chr3_009550.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=80bp
MGNRICCLGGNPPQAAASSDAGESSPEGGNQKLRNNSSGATPVAPKPPQG
SLDDRFVLLESPQKTRLYSEIEVLFQVTC*

mRNA from alignment at chr3:25580802..25582390-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1589bp; location=Sequence derived from: chr3:25580802..25582390- (Citrus maxima
ATGGGAAATCGAATCTGTTGTCTTGGAGGCAATCCACCACAAGCTGCGGC
GTCCAGCGACGCCGGCGAATCATCACCGGAAGGTGGCAATGTAAGACATG
TTAGAGGTCCTGTGAATCCTCCCACCACTATGGGTGTCATGGGACGTCAA
CATGCACAAAGAAATTAACGCTGCTAGGATTTCCACCAAAGAAGTCATGA
TGTTGAGGAGAACATTTCCAATATATTTGGGAATGATTCATTACTTTAAT
TTATTTAGCAAAAATTAAGAAATAATTCTTCGGGGGCTACTCCAGTTGCT
CCCAAACCTCCTCAAGGGTCACTTGATGATCGTTTCGTTTTGCTCGAGTC
TCCACAAAAGACAAGACTTTACTCTGGTATGCTTAATTTCACTGGTAATT
ATAGACTTTCTTAATTTTTTTAATATTTTCCTAATTGTGCATATGTATAA
TCAACATTTTGATTGTGAATAATTCAAATGTAAATATTTCGATCCATATA
TATGTATTATGAACCAAATTCTATTATCTGCGAACAAAAAGCACATTTTT
AAAAGAAAAAAAAAAATTGAATATCATACCTCCTATTTTAATACAGGAGA
TACTATCTCAGGGATTATTTATTAATTCTTAACTTTAACTAGACGTACAT
ATCTCCATATTTTTCTCTTGTAATCTGATAGCCGGATCTTGGGAAGTTCA
ATAATATCAATTAATTATATGATTTTTTTTTGGCTGTAATTAATTATATG
GTATTGATAACATTTAACAGTTTCAAGCAGTTCCAATAAGAAGAAATAAA
TGGGCTTGATGTCTAATTAGATGAAATTTCTTCCCAACATTTTCCTTTTC
CGGTATCATGAATTGAAAGGGGTGACGAAAATGGCAGAAATTTACTTGTG
GTGCAACCTACTACCGTGAAGGAATTTATATAATTTGGGATAGATTCCTT
TTCACTGTTAGGGTTTGATACAAATGCTTGTTTGGTCCTCGGTACTCTTA
AAAATTATTAAAGGATCATGCTGTTACTTGTGACAATGTTAGAAGTTTTT
TTTTTAATGTTTTTCTCATTTCTTTATACTATATAGGCTGGCGCTAAGTT
ACGTGAACGTAACTTGCGCTTCCTCTCTAACCATGATGTCCGCCCACCAA
GAGTATCAGACATGCGTGAGAGGGCCATAAGTTACGTTCACGTAACTTAG
ACCCTCCCTATTATATAATAACTCTAGAAATATTGAATAAATTAACACGG
CATGTGGGTCCGAGTAGCATTAAGTTATGCATCTTGGGAAGAGTACAAAT
AAATAATAACCATAAATAAAATATTATGACAATTTACTCAGCACCAATTA
TCAATTTGTATATATTAACCGACCATTTTGTAGGTTACCTCATTTCAATC
TGTTAAAGAATCTATTAAAAGGTTATCACACTCTTAGAACAGGTTAAATA
CATAAAAACATGATTTTACCCCTTGAAATGTAAAAACAGAAAAATAAAAA
CAATTATATATTTACCAAGTCAAACCTGTTTTGTAAGTGACAAGTTTTGG
TTTGCAGAAATCGAAGTGCTCTTCCAAGTTACGTGCTGA

Coding sequence (CDS) from alignment at chr3:25580802..25582390-

>CMJ_chr3_009550.1_cmj_v1 ID=CMJ_chr3_009550.1_cmj_v1; Name=CMJ_chr3_009550.1; organism=Citrus maxima; type=CDS; length=240bp; location=Sequence derived from: chr3:25580802..25582390- (Citrus maxima
ATGGGAAATCGAATCTGTTGTCTTGGAGGCAATCCACCACAAGCTGCGGC
GTCCAGCGACGCCGGCGAATCATCACCGGAAGGTGGCAATCAAAAATTAA
GAAATAATTCTTCGGGGGCTACTCCAGTTGCTCCCAAACCTCCTCAAGGG
TCACTTGATGATCGTTTCGTTTTGCTCGAGTCTCCACAAAAGACAAGACT
TTACTCTGAAATCGAAGTGCTCTTCCAAGTTACGTGCTGA