CMJ_chr3_009570.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: V4SYL3|V4SYL3_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10000862mg PE=4 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 1.225e-78 Identity = 121/137 (88.32%), Postives = 126/137 (91.97%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLAPTHHVQHGTALHMLARNPSPFADTGGGLPKS 137
MDPEDL LQDENGNTAFCFAAA GAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFH+S+KEL TEDRKVIFITSVDTGLYDLALKLLK+DRQLA THHV+HGTALHMLARNP PFA G+ K
Sbjct: 47 MDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDRKVIFITSVDTGLYDLALKLLKNDRQLALTHHVKHGTALHMLARNPFPFAGRVLGIMKC 183
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: A0A067ETF3|A0A067ETF3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040056mg PE=4 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 7.057e-76 Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLAPTHHVQHGTALHMLARNPSPFADTGGGLPKS 137
MDPEDL LQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLA THHVQHGTALHMLARNPSPFADT G+ K
Sbjct: 64 MDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKC 200
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: A0A2H5Q8B5|A0A2H5Q8B5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_205600 PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 1.517e-75 Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLAPTHHVQHGTALHMLARNPSPFADTGGGLPKS 137
MDPEDL LQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLA THHVQHGTALHMLARNPSPFADT G+ K
Sbjct: 115 MDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKC 251
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: A0A067EPY5|A0A067EPY5_CITSI (ANK_REP_REGION domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037194mg PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.129e-56 Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLY 92
MDPEDL LQDENGNTAFCFAAA GAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFH+S+KEL TEDRKVIFITSVDTGLY
Sbjct: 115 MDPEDLMLQDENGNTAFCFAAAVGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHKSEKELPTEDRKVIFITSVDTGLY 206
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: A0A067D4A3|A0A067D4A3_CITSI (ANK_REP_REGION domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g037056mg PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.109e-53 Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLY 92
MDPEDL LQDENGNT FCFAAA GAVDIANLMLKKNPSLLGIRG++N+PPLYFAALFGQ TASFLFH+SKKEL TEDRKVIFITSVDTGLY
Sbjct: 47 MDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDRKVIFITSVDTGLY 138
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: V4T3D8|V4T3D8_CITCL (ANK_REP_REGION domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10003374mg PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.533e-53 Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKL 98
MDPEDL LQDENGNT FCFAAA GAVDIANLMLKKNPSLLGIRG++N+PPLYFAALFGQ TASFLFH+SKKEL TEDRKVIFITSVDTGLY + + +
Sbjct: 47 MDPEDLMLQDENGNTTFCFAAAVGAVDIANLMLKKNPSLLGIRGTENIPPLYFAALFGQMGTASFLFHKSKKELITEDRKVIFITSVDTGLYAMKIAV 144
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: V4T3D3|V4T3D3_CITCL (ANK_REP_REGION domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10003360mg PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.572e-47 Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKS 101
MDPEDL LQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLY AL+L+K
Sbjct: 88 MDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLY--ALELVKC 186
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: A0A2H5Q8B4|A0A2H5Q8B4_CITUN (ANK_REP_REGION domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_205600 PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.961e-47 Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKS 101
MDPEDL LQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLY AL+L+K
Sbjct: 88 MDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLY--ALELVKC 186
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: A0A2P6QDV2|A0A2P6QDV2_ROSCH (Putative ankyrin repeat-containing domain, PGG domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0045551 PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 8.600e-39 Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = 0 Query: 4 EDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLAPTHHVQHGTALHMLARNPSPFADTGGGLPKSLINS 141
+DL LQD NGNTAF AAAAG+++IA +M+KKN L IRG + M PLY AAL GQ+ A L+ R+K+ L DR+ +F T +D GLYDLA+K+L+SDR LA + + TALH+LAR PS F G+ LINS
Sbjct: 123 QDLALQDMNGNTAFSIAAAAGSIEIAQIMMKKNKYLPVIRGGEGMTPLYMAALLGQSVMADNLYSRTKEMLEEADRQALFFTCIDNGLYDLAMKMLRSDRALAKARNAKQETALHILARTPSEFTSQSPGMWSRLINS 260
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Match: A0A2H5P9S1|A0A2H5P9S1_CITUN (ANK_REP_REGION domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_116680 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 1.317e-38 Identity = 76/145 (52.41%), Postives = 98/145 (67.59%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFH--RSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLAPTHHVQHGTALHMLARNPSPFADTGGGLPKSLINSSN 143
M+PEDLTLQD NGNTAFCFA AAG++ IA +MLKKN LL +RG +NM PLY AA+ Q D A +L+ ++K+ LT ED+ +F T + T L+DLALKLL+ LA + TALH+LAR PS FA GL L++S +
Sbjct: 107 MEPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKENLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSEH 251
BLAST of CMJ_chr3_009570.1 vs. Araport11
Match: AT5G35830.1 (| Ankyrin repeat family protein | Chr5:14000313-14001416 REVERSE LENGTH=282 | 201606) HSP 1 Score: 70.4774 bits (171), Expect = 3.818e-15 Identity = 33/93 (35.48%), Postives = 56/93 (60.22%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLY 92
++ DL L++ +GNTA CFAAA+G V+IA ++++KN L IRG P++ AALFG + +L+ ++ +E E+ +F + +Y
Sbjct: 145 LESNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGEMVKYLYKNTRFREFNDEEFVNLFHAVISADIY 237
BLAST of CMJ_chr3_009570.1 vs. Araport11
Match: AT3G54070.1 (| LOW protein: ankyrin repeat protein | Chr3:20022642-20023603 REVERSE LENGTH=256 | 201606) HSP 1 Score: 66.2402 bits (160), Expect = 1.219e-13 Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 1 MDPEDLTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHR-SKKELTTEDRKVIFITSVDTGLY----DLALKLLKS----DRQLAPTHHVQHGTALHMLARNPSPFA 128
MDP DL+L++++GNT FAAA G ++ A +++ L I K M P++ AAL+G + +LF + S K+L + +F T + +Y D+ L +L+ ++LA + ALH+LAR S +
Sbjct: 108 MDPPDLSLKNKDGNTPLSFAAALGDIETAEMLINMIRDLPDISNEKTMTPIHIAALYGHGEMVQYLFSKTSIKDLNDQQYLNLFHTMISADIYGVFADVPLWMLERVDLYRKELAL--YPNSNKALHLLARKTSAIS 242
BLAST of CMJ_chr3_009570.1 vs. Araport11
Match: AT3G18670.2 (| Ankyrin repeat family protein | Chr3:6424135-6426471 REVERSE LENGTH=653 | 201606) HSP 1 Score: 64.6994 bits (156), Expect = 8.586e-13 Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = 0 Query: 2 DPED-LTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRS----------KKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLAPTHHVQHGTALHMLARNPSPF 127
DPE L ++++NG TA +AA G V IA ++ K P L+ +R +K P+ A+L+G +L+ + E ++ ++ + GLY +AL L++ +LA T + TA+ LA+ P F
Sbjct: 109 DPEQVLKIKNDNGYTALTYAATGGIVRIAECLVNKCPGLVSVRNAKEHIPIVVASLYGHKHLVQYLYSHTPLSDLDPCDDSDEHKGKNGAMLVTNCIVDGLYCIALDLIQRYPKLAYTRDSDNDTAIMALAQTPYAF 245
BLAST of CMJ_chr3_009570.1 vs. Araport11
Match: AT3G18670.1 (| Ankyrin repeat family protein | Chr3:6424135-6426471 REVERSE LENGTH=598 | 201606) HSP 1 Score: 64.3142 bits (155), Expect = 1.270e-12 Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = 0 Query: 2 DPED-LTLQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRS----------KKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLAPTHHVQHGTALHMLARNPSPF 127
DPE L ++++NG TA +AA G V IA ++ K P L+ +R +K P+ A+L+G +L+ + E ++ ++ + GLY +AL L++ +LA T + TA+ LA+ P F
Sbjct: 109 DPEQVLKIKNDNGYTALTYAATGGIVRIAECLVNKCPGLVSVRNAKEHIPIVVASLYGHKHLVQYLYSHTPLSDLDPCDDSDEHKGKNGAMLVTNCIVDGLYCIALDLIQRYPKLAYTRDSDNDTAIMALAQTPYAF 245 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009570.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_009570.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_009570.1_cmj_v1 ID=CMJ_chr3_009570.1_cmj_v1; Name=CMJ_chr3_009570.1; organism=Citrus maxima; type=mRNA; length=432bpback to top protein sequence of CMJ_chr3_009570.1_cmj_v1 >CMJ_chr3_009570.1_cmj_v1 ID=CMJ_chr3_009570.1_cmj_v1; Name=CMJ_chr3_009570.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=144bpback to top mRNA from alignment at chr3:25617515..25619977+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2463bp; location=Sequence derived from: chr3:25617515..25619977+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:25617515..25619977+ >CMJ_chr3_009570.1_cmj_v1 ID=CMJ_chr3_009570.1_cmj_v1; Name=CMJ_chr3_009570.1; organism=Citrus maxima; type=CDS; length=432bp; location=Sequence derived from: chr3:25617515..25619977+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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