CMJ_chr3_009690.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_009690.1
Unique Name	CMJ_chr3_009690.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	528

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
cmjcsR254	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cmjzkR189	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmjzkR214	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL217	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL223	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0327	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0383	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0470	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0553	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjcsgR153	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL238	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcmjL284	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL062	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cllcmjL155	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR204	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR248	Citrus maxima cv. XGF genome v1.0	Citrus maxima
chhcmjL616	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
clhcmjL029	Clausena lansium cv. HP genome v1.0	Clausena lansium
clhcmjL249	Clausena lansium cv. HP genome v1.0	Clausena lansium
aeacmjL359	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cmhcmjL146	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjlssR193	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR276	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjneiR168	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL552	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Csi03G023270.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
mi_v1.0.primary_g15578.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
g9452.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
Chh186770.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
drCitSine.Jinhong.1.0.HB3g24530.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
Cic270250.1	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
EVM_prediction_HIC_ASM_2.2074	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
Pt5g018310.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
LW284850.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
orange1.1g038728m.v1.1	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
eg_v1.0.primary_g17950.t1	Citrus glauca CRC3463 genome v1	Citrus glauca
eg_v1.0.alternate_g21103.t2	Citrus glauca CRC3463 genome v1	Citrus glauca
hap1-g8085.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
drCitSine.Jinhong.1.0.HA3g24710.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
Abu3g_008440.1	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
g8807.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
EVM_prediction_chr2.1_tiancheng.875	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
g5184.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
g8758.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
HP074190.1	Clausena lansium cv. HP genome v1.0	Clausena lansium
hap2-g8600.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
EVM_prediction_chr2.2_youzi.959	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
g8749.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
hap2-g8857.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
LW067280.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
hap1-g8877.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
XGF256510.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima
XGF171540.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_009690	CMJ_chr3_009690_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009690.1.exon1	CMJ_chr3_009690.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009690.1.cds.1	CMJ_chr3_009690.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009690.1_cmj_v1	CMJ_chr3_009690.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_009690.1_cmj_v1	CMJ_chr3_009690.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr3_009690.1 vs. ExPASy TrEMBL
Match: A0A067F1V9|A0A067F1V9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038728mg PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.058e-73
Identity = 121/128 (94.53%), Postives = 122/128 (95.31%), Query Frame = 0

Query:    1 MRNPSQTAASGDSGVSSSAGGNARHVGGPVNPPPPPDVFEGHAGGHGRGHVNPPHPHVDMERHVRRPVNPRPPQHAFGGHAGGPVNPDVRERQARDPVNPPPPPDVFAGHAGGHGRGPVNPSPSHVEM 128
            MRNPSQTAASGDSGVSSS GGNARHVGGPVNPPPPPDVFEGHAGGHGRGHVNPPHPHVDMERHVRRPVNPRPPQH FGGHAGGPVNPDVRERQARDPVNPPPPPDVFAGHAGGHGRGPVNPSP  +  
Sbjct:    1 MRNPSQTAASGDSGVSSSEGGNARHVGGPVNPPPPPDVFEGHAGGHGRGHVNPPHPHVDMERHVRRPVNPRPPQHVFGGHAGGPVNPDVRERQARDPVNPPPPPDVFAGHAGGHGRGPVNPSPFTLRW 128

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_009690.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_009690.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_009690.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr3_009690.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
A0A067F1V9\|A0A067F1V9_CITSI	2.058e-73	94.53	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]

BLAST of CMJ_chr3_009690.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_009690.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:26052006..26052533-
coding sequence from alignment at chr3:26052006..26052533-

mRNA sequence

>CMJ_chr3_009690.1_cmj_v1 ID=CMJ_chr3_009690.1_cmj_v1; Name=CMJ_chr3_009690.1; organism=Citrus maxima; type=mRNA; length=528bp
ATGAGAAATCCATCACAAACAGCTGCGTCCGGCGACTCCGGCGTATCATC
ATCGGCAGGTGGCAATGCAAGACATGTTGGAGGTCCTGTGAATCCTCCCC
CTCCTCCGGATGTCTTTGAAGGACATGCTGGAGGACATGGCAGAGGTCAT
GTAAATCCTCCCCACCCTCACGTTGACATGGAAAGACATGTTAGACGTCC
TGTGAATCCTCGCCCTCCCCAGCATGCCTTTGGAGGACATGCTGGAGGTC
CTGTGAATCCAGATGTCAGGGAAAGGCAGGCTAGAGATCCTGTGAATCCT
CCCCCTCCTCCAGATGTCTTTGCAGGACATGCTGGAGGACATGGCAGAGG
TCCTGTGAATCCTTCCCCCTCTCACGTTGAGATGGGAAGACAGGTTAGAC
GTCCTGTGAATCCTCTCCCCTCTCATCATGTCTTTGGAGGACATGCTGGA
GGTCCTGTGAATCCAGATGTCAGGGGAAGCCAGGTTAGAGATCCTGTGAA
TCCTCCCCCCCCTCCGGATATCTTTTGA

protein sequence of CMJ_chr3_009690.1_cmj_v1

>CMJ_chr3_009690.1_cmj_v1 ID=CMJ_chr3_009690.1_cmj_v1; Name=CMJ_chr3_009690.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=176bp
MRNPSQTAASGDSGVSSSAGGNARHVGGPVNPPPPPDVFEGHAGGHGRGH
VNPPHPHVDMERHVRRPVNPRPPQHAFGGHAGGPVNPDVRERQARDPVNP
PPPPDVFAGHAGGHGRGPVNPSPSHVEMGRQVRRPVNPLPSHHVFGGHAG
GPVNPDVRGSQVRDPVNPPPPPDIF*

mRNA from alignment at chr3:26052006..26052533-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=528bp; location=Sequence derived from: chr3:26052006..26052533- (Citrus maxima
ATGAGAAATCCATCACAAACAGCTGCGTCCGGCGACTCCGGCGTATCATC
ATCGGCAGGTGGCAATGCAAGACATGTTGGAGGTCCTGTGAATCCTCCCC
CTCCTCCGGATGTCTTTGAAGGACATGCTGGAGGACATGGCAGAGGTCAT
GTAAATCCTCCCCACCCTCACGTTGACATGGAAAGACATGTTAGACGTCC
TGTGAATCCTCGCCCTCCCCAGCATGCCTTTGGAGGACATGCTGGAGGTC
CTGTGAATCCAGATGTCAGGGAAAGGCAGGCTAGAGATCCTGTGAATCCT
CCCCCTCCTCCAGATGTCTTTGCAGGACATGCTGGAGGACATGGCAGAGG
TCCTGTGAATCCTTCCCCCTCTCACGTTGAGATGGGAAGACAGGTTAGAC
GTCCTGTGAATCCTCTCCCCTCTCATCATGTCTTTGGAGGACATGCTGGA
GGTCCTGTGAATCCAGATGTCAGGGGAAGCCAGGTTAGAGATCCTGTGAA
TCCTCCCCCCCCTCCGGATATCTTTTGA

Coding sequence (CDS) from alignment at chr3:26052006..26052533-

>CMJ_chr3_009690.1_cmj_v1 ID=CMJ_chr3_009690.1_cmj_v1; Name=CMJ_chr3_009690.1; organism=Citrus maxima; type=CDS; length=528bp; location=Sequence derived from: chr3:26052006..26052533- (Citrus maxima
ATGAGAAATCCATCACAAACAGCTGCGTCCGGCGACTCCGGCGTATCATC
ATCGGCAGGTGGCAATGCAAGACATGTTGGAGGTCCTGTGAATCCTCCCC
CTCCTCCGGATGTCTTTGAAGGACATGCTGGAGGACATGGCAGAGGTCAT
GTAAATCCTCCCCACCCTCACGTTGACATGGAAAGACATGTTAGACGTCC
TGTGAATCCTCGCCCTCCCCAGCATGCCTTTGGAGGACATGCTGGAGGTC
CTGTGAATCCAGATGTCAGGGAAAGGCAGGCTAGAGATCCTGTGAATCCT
CCCCCTCCTCCAGATGTCTTTGCAGGACATGCTGGAGGACATGGCAGAGG
TCCTGTGAATCCTTCCCCCTCTCACGTTGAGATGGGAAGACAGGTTAGAC
GTCCTGTGAATCCTCTCCCCTCTCATCATGTCTTTGGAGGACATGCTGGA
GGTCCTGTGAATCCAGATGTCAGGGGAAGCCAGGTTAGAGATCCTGTGAA
TCCTCCCCCCCCTCCGGATATCTTTTGA