CMJ_chr3_010460.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_010460.1
Unique Name	CMJ_chr3_010460.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	282

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
clecmjL627	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL663	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0327	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0383	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjcsgR151	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cizcmjL507	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cmjcmxR190	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR215	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR193	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL350	Citrus australasica cv. AZM genome v1.0	Citrus australasica
cmjmpjR164	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cmjmpjR196	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cigcmjL252	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL146	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
clxcmjL490	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL552	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL556	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
drCitSine.Jinhong.1.0.HB3g23640.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
gene-KPL71_015088-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cmt113860.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_010460	CMJ_chr3_010460_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010460.1.exon1	CMJ_chr3_010460.1.exon1_cmj_v1	Citrus maxima	exon
CMJ_chr3_010460.1.exon2	CMJ_chr3_010460.1.exon2_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010460.1.cds.1	CMJ_chr3_010460.1.cds.1_cmj_v1	Citrus maxima	CDS
CMJ_chr3_010460.1.cds.2	CMJ_chr3_010460.1.cds.2_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_010460.1_cmj_v1	CMJ_chr3_010460.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_010460.1_cmj_v1	CMJ_chr3_010460.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL
Match: A0A067D394|A0A067D394_CITSI (CCHC-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037800mg PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.889e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0

Query:    4 ETMGEKGLGGEKTTTVAAPGKDAGRDDQNEPKFRPWIVVSRKGKQHVNKGE 54
            E   ++GLGGEKTTT AAPGKDAGRDDQNEPKF PW+VVSRKGKQ VNKG+
Sbjct:  126 EACPDRGLGGEKTTTAAAPGKDAGRDDQNEPKFGPWMVVSRKGKQRVNKGK 176

HSP 2 Score: 71.633 bits (174), Expect = 2.177e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query:   53 GEPPNTGTFEVNENAEDDSNDNDFMHESGDGNSDSIEE 90
            GEPPNTGTFEVNENAEDDSND+DFMHESGD NSDS E+
Sbjct:  344 GEPPNTGTFEVNENAEDDSNDSDFMHESGDRNSDSTED 381

[Close]

BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL
Match: A0A2H5QWJ5|A0A2H5QWJ5_CITUN (CCHC-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_268340 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.716e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0

Query:    4 ETMGEKGLGGEKTTTVAAPGKDAGRDDQNEPKFRPWIVVSRKGKQHVNKGE 54
            E   ++GLGGEKTTT AAPGKDAGRDDQNEPKF PW+VVSRKGKQ VNKG+
Sbjct:  270 EACPDRGLGGEKTTTAAAPGKDAGRDDQNEPKFGPWMVVSRKGKQRVNKGK 320

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A067D394\|A0A067D394_CITSI	1.889e-18	80.39	CCHC-type domain-containing protein OS=Citrus sine...	[more]
A0A2H5QWJ5\|A0A2H5QWJ5_CITUN	2.716e-18	80.39	CCHC-type domain-containing protein OS=Citrus unsh...	[more]

BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_010460.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:27042748..27043535+
coding sequence from alignment at chr3:27042748..27043535+

mRNA sequence

>CMJ_chr3_010460.1_cmj_v1 ID=CMJ_chr3_010460.1_cmj_v1; Name=CMJ_chr3_010460.1; organism=Citrus maxima; type=mRNA; length=282bp
ATGAGAAATGAGACAATGGGAGAGAAGGGTCTCGGTGGTGAAAAAACCAC
TACCGTAGCTGCTCCAGGGAAAGATGCCGGAAGGGATGATCAGAATGAGC
CGAAGTTTAGACCGTGGATTGTGGTCTCTAGAAAAGGAAAGCAACATGTT
AATAAGGGGGAGCCTCCTAATACTGGAACTTTTGAGGTGAATGAAAATGC
TGAAGATGACAGCAATGATAATGACTTCATGCATGAAAGTGGAGATGGGA
ACTCTGACTCAATAGAGGAGATGTATCTCTAG

protein sequence of CMJ_chr3_010460.1_cmj_v1

>CMJ_chr3_010460.1_cmj_v1 ID=CMJ_chr3_010460.1_cmj_v1; Name=CMJ_chr3_010460.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=94bp
MRNETMGEKGLGGEKTTTVAAPGKDAGRDDQNEPKFRPWIVVSRKGKQHV
NKGEPPNTGTFEVNENAEDDSNDNDFMHESGDGNSDSIEEMYL*

mRNA from alignment at chr3:27042748..27043535+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=788bp; location=Sequence derived from: chr3:27042748..27043535+ (Citrus maxima
ATGAGAAATGAGACAATGGGAGAGAAGGGTCTCGGTGGTGAAAAAACCAC
TACCGTAGCTGCTCCAGGGAAAGATGCCGGAAGGGATGATCAGAATGAGC
CGAAGTTTAGACCGTGGATTGTGGTCTCTAGAAAAGGAAAGCAACATGTT
AATAAGGGTTAGGAGTTAATACAGGATCTAAACCATGATCATCGGAGCAA
TTTTGGTAGTAGTTCCCATTTTAAAGTGCTTGATAGTGATATGGCTGGAG
AGATTGACAATGAAGCAAACTGTGAGGGATTTGTTCCTAATTTACACCCA
TATGGACCCACCAATAACCTTAACAGACATAAACTAAGACCTAAAAAACA
ACTTTTATTTAAAAAATCCCCCCTCCCATGCAACCAACCCAAACCACACG
TAACCAAAAGATTGCCATTCCTGACATCCACACAGCCTCTAGCCCCATGC
AAAATTTACAAGTTCCACGTGATTTGAACTAAGACGATGCAAATCAACCT
AACCTCCCCACCTATGTTTTCGCCCATATCAGTCTCAATCCCCTTTTCCA
CACTGCTATTTCTTTTTCAACTGACACAAATATCAACCCCATGTCCATGC
CTTCCAACCCAACAGAACTTCTATCCTCCAACACCGTGGTGGCAGAAACG
CCTTAGCCACCAGGGGAGCCTCCTAATACTGGAACTTTTGAGGTGAATGA
AAATGCTGAAGATGACAGCAATGATAATGACTTCATGCATGAAAGTGGAG
ATGGGAACTCTGACTCAATAGAGGAGATGTATCTCTAG

Coding sequence (CDS) from alignment at chr3:27042748..27043535+

>CMJ_chr3_010460.1_cmj_v1 ID=CMJ_chr3_010460.1_cmj_v1; Name=CMJ_chr3_010460.1; organism=Citrus maxima; type=CDS; length=282bp; location=Sequence derived from: chr3:27042748..27043535+ (Citrus maxima
ATGAGAAATGAGACAATGGGAGAGAAGGGTCTCGGTGGTGAAAAAACCAC
TACCGTAGCTGCTCCAGGGAAAGATGCCGGAAGGGATGATCAGAATGAGC
CGAAGTTTAGACCGTGGATTGTGGTCTCTAGAAAAGGAAAGCAACATGTT
AATAAGGGGGAGCCTCCTAATACTGGAACTTTTGAGGTGAATGAAAATGC
TGAAGATGACAGCAATGATAATGACTTCATGCATGAAAGTGGAGATGGGA
ACTCTGACTCAATAGAGGAGATGTATCTCTAG